| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF051B23 | Sequence | 630 | 011823 (20) | 502 | 006227 (9) | dbj|BAE71241.1| | 6e-25 | putative Argonaute protein [Trifolium pratense] | |||
| JMFN029B03 | Sequence | 617 | 006227 (9) | gb|KDO41892.1| | 4e-93 | hypothetical protein CISIN_1g0014661mg, partial [Citrus sinensis] gb|KDO41893.1| | |||||
| JMFN038C08 | Sequence | 597 | 006227 (9) | gb|KDO41892.1| | 2e-88 | hypothetical protein CISIN_1g0014661mg, partial [Citrus sinensis] gb|KDO41893.1| | |||||
| JMFN039P11 | Sequence | 630 | 006227 (9) | ref|NP_001159239.1| | 5e-142 | uncharacterized protein LOC100304327 [Zea mays] gb|ACN25552.1| unknown [Zea mays | |||||
| JMFS048B02 | Sequence | 624 | 006227 (9) | ref|XP_009793489.1| | 418 | PREDICTED: protein argonaute 1B-like isoform X3 [Nicotiana sylvestris] | |||||
| JMFS054G07 | Sequence | 599 | 006227 (9) | ref|XP_009793489.1| | 399 | PREDICTED: protein argonaute 1B-like isoform X3 [Nicotiana sylvestris] | |||||
| JMFS072B07 | Sequence | 243 | 006227 (9) | gb|KEH26854.1| | 2e-04 | argonaute protein 1A [Medicago truncatula] | |||||
| JMFS084C05 | Sequence | 243 | 006227 (9) | gb|KEH26854.1| | 2e-04 | argonaute protein 1A [Medicago truncatula] | |||||
| JMSF032H24 | Sequence | 708 | 011823 (20) | emb|CDO98607.1| | 6e-09 | unnamed protein product [Coffea canephora] | 631 | 006227 (9) | gb|KDO41892.1| | 2e-103 | hypothetical protein CISIN_1g0014661mg, partial [Citrus sinensis] gb|KDO41893.1| |
This contig is upended
. : . : . : . : . : . :
rJMFF051B23- AGTAAGAAAATACTGGAT
____________________________________________________________
consensus AGTAAGAAAATACTGGAT
. : . : . : . : . : . :
rJMFF051B23- CTCATCACTCCATACCAGCAAATAGAAAATTCATAAACATAACATAATACGGAGTAATTA
____________________________________________________________
consensus CTCATCACTCCATACCAGCAAATAGAAAATTCATAAACATAACATAATACGGAGTAATTA
. : . : . : . : . : . :
JMFS084C05+ AAAACAAAGCACACCAATCTTATAAATCACACAGAGCATCAT
JMFS072B07+ AAAACAAAGCACACCAATCTTATAAATCACACAGAGCATCAT
rJMFF051B23- ATAAAGATAGAATCACTTAAAACAAAGCACACCAATCTTATAAATCACACAGAGCATCAT
____________________________________________________________
consensus ATAAAGATAGAATCACTTAAAACAAAGCACACCAATCTTATAAATCACACAGAGCATCAT
. : . : . : . : . : . :
JMFS084C05+ CTAAGAGTCGAATCAGAGTCATTGAAAACAAACTAAGAAAAAACAAAGAGTCGCATGCCA
JMFS072B07+ CTAAGAGTCGAATCAGAGTCATTGAAAACAAACTAAGAAAAAACAAAGAGTCGCATGCCA
rJMFF051B23- CTAAGAGTCGAATCAGAGTCATTGAAAACAAACTAAGAAAAAACAAAGAGTCGCATGCCA
JMFN038C08+ GAGTCGAATCAGAGTCATTGAAAACAAACTAAGAAAAAACAAAGAGTCGCATGCCA
JMFN029B03+ AAGAGTCGAATCAGAGTCATTGAAAACAAACTAAGAAAAAACAAAGAGTCGCATGCCA
rJMSF032H24- TAAGAAAAAACAAAGAGTCGCATGCCA
____________________________________________________________
consensus CTAAGAGTCGAATCAGAGTCATTGAAAACAAACTAAGAAAAAACAAAGAGTCGCATGCCA
. : . : . : . : . : . :
JMFS084C05+ ACAACCACATCCAACCAACAAGTACAACTGAAATAAAGATAGTTCATAGCCTAGCTCCAG
JMFS072B07+ ACAACCACATCCAACCAACAAGTACAACTGAAATAAAGATAGTTCATAGCCTAGCTCCAG
rJMFF051B23- ACAACCACATCCAACCAACAAGTACAACTGAAATAAAGATAGTTCATAGCCTAGCTCCAG
JMFN038C08+ ACAACCACATCCAACCAACAAGTACAACTGAAATAAAGATAGTTCATAGCCTAGCTCCAG
JMFN029B03+ ACAACCACATCCAACCAACAAGTACAACTGAAATAAAGATAGTTCATAGCCTAGCTCCAG
rJMSF032H24- ACAACCACATCCAACCAACAAGTACAACTGAAATAAAGATAGTTCATAGCCTAGCTCCAG
____________________________________________________________
consensus ACAACCACATCCAACCAACAAGTACAACTGAAATAAAGATAGTTCATAGCCTAGCTCCAG
. : . : . : . : . : . :
JMFS084C05+ ACATGACATCTAACAATAAAACATCACTTTTTTCACATTGTCCTTGAGAGCAGGCAACGG
JMFS072B07+ ACATGACATCTAACAATAAAACATCACTTTTTTCACATTGTCCTTGAGAGCAGGCAACGG
rJMFF051B23- ACATGACATCTAACAATAAAACATCACTTTTTTCACATTGTCCTTGAGAGCAGGCAACGG
JMFN038C08+ ACATGACATCTAACAATAAAACATCACTTTTTTCACATTGTCCTTGAGAGCAGGCAACGG
JMFN029B03+ ACATGACATCTAACAATAAAACATCACTTTTTTCACATTGTCCTTGAGAGCAGGCAACGG
rJMSF032H24- ACATGACATCTAACAATAAAACATCACTTTTTTCACATTGTCCTTGAGAGCAGGCAACGG
____________________________________________________________
consensus ACATGACATCTAACAATAAAACATCACTTTTTTCACATTGTCCTTGAGAGCAGGCAACGG
. : . : . : . : . : . :
JMFS084C05+ CCTCACAACAGCATTAGCCGA
JMFS072B07+ CCTCACAACAGCATTAGCCGA
rJMFF051B23- CCTCACAACAGCATTAGCCGACCCCGGTGCCCGGGTGTTTCTCCCAGCAGCAGCACCACC
JMFN038C08+ CCTCACAACAGCATTAGCCGACCCCGGTGCCCGGGTGTTTCTCCCAGCAGCAGCACCACC
JMFN029B03+ CCTCACAACAGCATTAGCCGACCCCGGTGCCCGGGTGTTTCTCCCAGCAGCAGCACCACC
rJMSF032H24- CCTCACAACAGCATTAGCCGACCCCGGTGCCCGGGTGTTTCTCCCAGCAGCAGCACCACC
____________________________________________________________
consensus CCTCACAACAGCATTAGCCGACCCCGGTGCCCGGGTGTTTCTCCCAGCAGCAGCACCACC
. : . : . : . : . : . :
rJMFF051B23- CCCACCACGGCCAGCAGCAGCACCACTTGTCATTGAACCACTGTCAGAAGTCTCTGGCTC
JMFN038C08+ CCCACCACGGCCAGCAGCAGCACCACTTGTCATTGAACCACTGTCAGAAGTCTCTGGCTC
JMFN029B03+ CCCACCACGGCCAGCAGCAGCACCACTTGTCATTGAACCACTGTCAGAAGTCTCTGGCTC
rJMSF032H24- CCCACCACGGCCAGCAGCAGCACCACTTGTCATTGAACCACTGTCAGAAGTCTCTGGCTC
____________________________________________________________
consensus CCCACCACGGCCAGCAGCAGCACCACTTGTCATTGAACCACTGTCAGAAGTCTCTGGCTC
. : . : . : . : . : . :
rJMFF051B23- CATGTAGAATCTTGCTCGGAAGGCTGCCAAATGTGCGTAGTATGCAGGGGGAACAATTGA
JMFN038C08+ CATGTAGAATCTTGCTCGGAAGGCTGCCAAATGTGCGTAGTATGCAGGGGGAACAATTGA
JMFN029B03+ CATGTAGAATCTTGCTCGGAAGGCTGCCAAATGTGCGTAGTATGCAGGGGGAACAATTGA
rJMSF032H24- CATGTAGAATCTTGCTCGGAAGGCTGCCAAATGTGCGTAGTATGCAGGGGGAACAATTGA
____________________________________________________________
consensus CATGTAGAATCTTGCTCGGAAGGCTGCCAAATGTGCGTAGTATGCAGGGGGAACAATTGA
. : . : . : . : . : . :
rJMFF051B23- TACA
JMFN038C08+ TACAGAACGGGTGCACCTTGCATAAGTGTAGCAGAGGTTGTTGGTTAGTGACTGAAGTCC
JMFN029B03+ TACAGAACGGGTGCACCTTGCATAAGTGTAGCAGAGGTTGTTGGTTAGTGACTGAAGTCC
rJMSF032H24- TACAGAACGGGTGCACCTTGCATAAGTGTAGCAGAGGTTGTTGGTTAGTGACTGAAGTCC
____________________________________________________________
consensus TACAGAACGGGTGCACCTTGCATAAGTGTAGCAGAGGTTGTTGGTTAGTGACTGAAGTCC
. : . : . : . : . : . :
JMFN038C08+ ATCAGCAGTAAAACTATTTTCATCCCACAAGACATGATAATGTGCTGGACGACTTGTACC
JMFN029B03+ ATCAGCAGTAAAACTATTTTCATCCCACAAGACATGATAATGTGCTGGACGACTTGTACC
rJMSF032H24- ATCAGCAGTAAAACTATTTTCATCCCACAAGACATGATAATGTGCTGGACGACTTGTACC
____________________________________________________________
consensus ATCAGCAGTAAAACTATTTTCATCCCACAAGACATGATAATGTGCTGGACGACTTGTACC
. : . : . : . : . : . :
JMFN038C08+ CTGTATACCGGCATGGCTACACAGGTAAAAGTCAAACTCAGTAGGGTGGCAGATCTTTGA
JMFN029B03+ CTGTATACCGGCATGGCTACACAGGTAAAAGTCAAACTCAGTAGGGTGGCAGATCTTTGA
rJMSF032H24- CTGTATACCGGCATGGCTACACAGGTAAAAGTCAAACTCAGTAGGGTGGCAGATCTTTGA
____________________________________________________________
consensus CTGTATACCGGCATGGCTACACAGGTAAAAGTCAAACTCAGTAGGGTGGCAGATCTTTGA
. : . : . : . : . : . :
JMFN038C08+ ATCAACAACGGTACCAGGCAGGATGTTACCACTCCTATCAACTGCATTTCGGTCATTGTG
JMFN029B03+ ATCAACAACGGTACCAGGCAGGATGTTACCACTCCTATCAACTGCATTTCGGTCATTGTG
rJMSF032H24- ATCAACAACGGTACCAGGCAGGATGTTACCACTCCTATCAACTGCATTTCGGTCATTGTG
____________________________________________________________
consensus ATCAACAACGGTACCAGGCAGGATGTTACCACTCCTATCAACTGCATTTCGGTCATTGTG
. : . : . : . : . : . :
JMFN038C08+ A
JMFN029B03+ ATTGTTAGCAAACAACCTA
rJMSF032H24- ATTGTTAGCAAACAACCTAGTATGGTGCCGTTTCTGAACGACACCAAAGNTAACCGGGGG
JMFN039P11+ TGTTAGCAAACAACCTAGTATGGTGCCGTTTCTGAACGACAACAAAGGTAACCGGGGG
____________________________________________________________
consensus ATTGTTAGCAAACAACCTAGTATGGTGCCGTTTCTGAACGACACCAAAGGTAACCGGGGG
. : . : . : . : . : . :
rJMSF032H24- CTGA
JMFN039P11+ CTGATAGTTTGGTTCCAGTGATGCACATGCCTTGCGAATCGCATCAAGTTCAAAGAGAAG
____________________________________________________________
consensus CTGATAGTTTGGTTCCAGTGATGCACATGCCTTGCGAATCGCATCAAGTTCAAAGAGAAG
. : . : . : . : . : . :
JMFN039P11+ TACTTGATAGAATTGCCCTTCGCTGACCCCATCCCTATAGAAAATGATTCTCTGTGGCTT
____________________________________________________________
consensus TACTTGATAGAATTGCCCTTCGCTGACCCCATCCCTATAGAAAATGATTCTCTGTGGCTT
. : . : . : . : . : . :
JMFN039P11+ CTGTCCAGTTGCTCTGCGGAAGGATATAAGCAATTCTTTGATCATGCCACCAGTAACATT
____________________________________________________________
consensus CTGTCCAGTTGCTCTGCGGAAGGATATAAGCAATTCTTTGATCATGCCACCAGTAACATT
. : . : . : . : . : . :
JMFN039P11+ CCCCCTAACAGGGTCTTGCCAAGATTTGAACAGATCCTCAATGAGCTCTTGCCTGTGTGC
____________________________________________________________
consensus CCCCCTAACAGGGTCTTGCCAAGATTTGAACAGATCCTCAATGAGCTCTTGCCTGTGTGC
. : . : . : . : . : . :
JMFN039P11+ CTGTGCAGAAACTAGGCCGGCATACTTTGTGATCTCAGGCCAATCCTGAGAAGCAACAAC
JMFS054G07+ CAGGCCAATCCTGAGAAGCAACAAC
____________________________________________________________
consensus CTGTGCAGAAACTAGGCCGGCATACTTTGTGATCTCAGGCCAATCCTGAGAAGCAACAAC
. : . : . : . : . : . :
JMFN039P11+ AGCCGCAATAGATGGACTTGAATCTTCCCCAGGATGAGGGTGGGTAACATCAGCACCGAA
JMFS054G07+ AGCCGCAATAGATGGACTTGAATCTTCCNCAGGATGAGGGTGGGTAACATCAGCACCGAA
JMFS048B02+ AGGGTGGGTAACATCAGCACCGAA
____________________________________________________________
consensus AGCCGCAATAGATGGACTTGAATCTTCCCCAGGATGAGGGTGGGTAACATCAGCACCGAA
. : . : . : . : . : . :
JMFN039P11+ AATAATAGTTGGTCGATCACTGACCAGGGGAATGCGCCTAGATAGTGCATCCACAAGTAC
JMFS054G07+ AATAATAGTTGGTCGATCACTGACCAGGGGAATGCGCCTAGATAGTGCATCCACAAGTAC
JMFS048B02+ AATAATAGTTGGTCGATCACTGACCAGGGGAATGCGCCTAGATAGTGCATCCACAAGTAC
____________________________________________________________
consensus AATAATAGTTGGTCGATCACTGACCAGGGGAATGCGCCTAGATAGTGCATCCACAAGTAC
. : . : . : . : . : . :
JMFN039P11+ AGTATTCCTCCCTCCAACTTTGACGTTGATTTTCAATGAAACATTGGCAAGGTATTGTTT
JMFS054G07+ AGTATTCCTCCCTCCAACTTTGACGTTGATTTTCAATGAAACATTGGCAAGGTATTGTTT
JMFS048B02+ AGTATTCCTCCCTCCAACTTTGACGTTGATTTTCAATGAAACATTGGCAAGGTATTGTTT
____________________________________________________________
consensus AGTATTCCTCCCTCCAACTTTGACGTTGATTTTCAATGAAACATTGGCAAGGTATTGTTT
. : . : . : . : . : . :
JMFN039P11+ GCTCATTTTGAACACATGCTTGGTCAAACAGCATTGTGACACAATTCCAAGGTCTGTCTC
JMFS054G07+ GCTCATTTTGAACACATGCTTGGTCAAACAGCATTGTGACACAATTCCAAGGTCTGTCTC
JMFS048B02+ GCTCATTTTGAACACATGCTTGGTCAAACAGCATTGTGACACAATTCCAAGGTCTGTCTC
____________________________________________________________
consensus GCTCATTTTGAACACATGCTTGGTCAAACAGCATTGTGACACAATTCCAAGGTCTGTCTC
. : . : . : . : . : . :
JMFN039P11+ ACAAATCCTTTTCAAATCACCATAGAGAGA
JMFS054G07+ ACAAATCCTTTTCAAATCACCATAGAGAGACCCATTATTGTCAGGAAGGATAACAATCAG
JMFS048B02+ ACAAATCCTTTTCAAATCACCATAGAGAGACCCATTATTGTCAGGAAGGATAACAATCAG
____________________________________________________________
consensus ACAAATCCTTTTCAAATCACCATAGAGAGACCCATTATTGTCAGGAAGGATAACAATCAG
. : . : . : . : . : . :
JMFS054G07+ AAGATCAAGCTCCCTTCCTTGTAGCTTTGTCATGGCATCATGATATCGAGCTTTCAGTGC
JMFS048B02+ AAGATCAAGCTTCCTTCCTTGTAGCTTTGTCATGGCATCATGATATCGAGCTTTCAGTGC
____________________________________________________________
consensus AAGATCAAGCTTCCTTCCTTGTAGCTTTGTCATGGCATCATGATATCGAGCTTTCAGTGC
. : . : . : . : . : . :
JMFS054G07+ TCTCTCAACCTGGTCTGGGCGTGCAGTAATAGGTGGTAGAACAGGATTTGGATTGAAGTT
JMFS048B02+ TCTCTCAACCTGGTCTGGGCGTGCAGTAATAGGTGGTAGAACAGGATTTGGATTGAAGTT
____________________________________________________________
consensus TCTCTCAACCTGGTCTGGGCGTGCAGTAATAGGTGGTAGAACAGGATTTGGATTGAAGTT
. : . : . : . : . : . :
JMFS054G07+ CATGCCAGATATTTGACACATTTGGGCAAGCTCAGAACAAAACCCTCTAGCAACACTATC
JMFS048B02+ CATGCCAGATATTTGACACATTTGGGCAAGCTCAGAACAAAACCCTCTAGCAACACTATC
____________________________________________________________
consensus CATGCCAGATATTTGACACATTTGGGCAAGCTCAGAACAAAACCCTCTAGCAACACTATC
. : . : . : . : . : . :
JMFS054G07+ TTGCACATTGCGGGAAAAGTTTATGCAAATCCAGTTGTTAACTGTTCCTCCATTAACCAT
JMFS048B02+ TTGCACATTGCGGGAAAAGTTTATGCAAATCCAGTTGTTAACTGTTCCTCCATTAACCAT
____________________________________________________________
consensus TTGCACATTGCGGGAAAAGTTTATGCAAATCCAGTTGTTAACTGTTCCTCCATTAACCAT
. : . : . : . : . : . :
JMFS054G07+ TTTCTTGTTCATCATATTCCACTGCCCAACTTGT
JMFS048B02+ TTTCTTGTTCATCATATTCCACTGTCCAACTTGTGGGAGACAATCTTTCTCACGACCAGT
____________________________________________________________
consensus TTTCTTGTTCATCATATTCCACTGTCCAACTTGTGGGAGACAATCTTTCTCACGACCAGT
. : . : . : . : . : . :
JMFS048B02+ ATCATGGTATTTTAACCAAGGAGCAGGTAAAATGCGAGCCTCGACCTGAGCAAGCCTTTC
____________________________________________________________
consensus ATCATGGTATTTTAACCAAGGAGCAGGTAAAATGCGAGCCTCGACCTGAGCAAGCCTTTC