Contig 006219:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS009B12Sequence590006219 (4)ref|XP_009594569.1|1e-10PREDICTED: protein transport protein Sec24-like CEF [Nicotiana tomentosiformis]
JMFS041B02Sequence415006219 (4)ref|XP_010321589.1|2e-04PREDICTED: protein transport protein Sec24-like At4g32640 [Solanum lycopersicum
JMFS087G03Sequence609006219 (4)ref|XP_009594569.1|6e-07PREDICTED: protein transport protein Sec24-like CEF [Nicotiana tomentosiformis]
JMSF029J15Sequence656006219 (4)ref|XP_009594569.1|1e-11PREDICTED: protein transport protein Sec24-like CEF [Nicotiana tomentosiformis]736010427 (2)ref|XP_004242337.1|1e-73PREDICTED: protein transport protein Sec24-like CEF [Solanum lycopersicum]

Alignment

This contig is upended


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JMFS087G03+                                                            CATAGCTGATG
                      ____________________________________________________________
consensus                                                              CATAGCTGATG
 
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JMFS087G03+           GTGGAGCTCCAACGGGTGGCCGCACCATGCCGGCTGCAGGAGGAAATCGTGGTCCACTCT
                      ____________________________________________________________
consensus             GTGGAGCTCCAACGGGTGGCCGCACCATGCCGGCTGCAGGAGGAAATCGTGGTCCACTCT
 
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JMFS087G03+           GCATTGGCCCTGACCCAAGCATGGGTGGCCCATTACTACTTGCAGTTGGCATGTTTGATG
                      ____________________________________________________________
consensus             GCATTGGCCCTGACCCAAGCATGGGTGGCCCATTACTACTTGCAGTTGGCATGTTTGATG
 
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JMFS087G03+           GTGGTGCAATAGAACTTGATGCAAATGGGGAGGCCATAAAAGGGCCCTGTTGAGGACCTG
                      ____________________________________________________________
consensus             GTGGTGCAATAGAACTTGATGCAAATGGGGAGGCCATAAAAGGGCCCTGTTGAGGACCTG
 
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JMFS087G03+           GAGTTGATGAAGGCAAAGTGCCAGGAGGTGGAGGAAAAGAAGGACCACCAATAGAAGAAG
JMSF029J15+                                                          CCAATAGAAGAAG
                      ____________________________________________________________
consensus             GAGTTGATGAAGGCAAAGTGCCAGGAGGTGGAGGAAAAGAAGGACCACCAATAGAAGAAG
 
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JMFS087G03+           GCAGCGAACCGGGTGGAGGTCTAGCTGCAAAAGGTGGAGGAGTCTGACCCATAGGAGGAC
JMFS009B12+                                                         ACCCATAGCAGGAC
JMSF029J15+           GCAGCGAACCGGGTGGAGGTCTAGCTGCAAAAGGTGGAGGAGTCTGACCCATAGGAGGAC
                      ____________________________________________________________
consensus             GCAGCGAACCGGGTGGAGGTCTAGCTGCAAAAGGTGGAGGAGTCTGACCCATAGGAGGAC
 
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JMFS087G03+           CTGTTGGTGTAATAGCCGCATTAGGAGGCAATGCATTTTGTGGCACAACACCTGGAGGAG
JMFS009B12+           CTGTTGGTCTAATAGCCGCATTAGGAGGCAATGCAGTATGTGGCACAACCCATGGAGGAG
JMSF029J15+           CTGTTGGTCTAATAGCCGCATTAGGAGGCAATGCATTTTGTGGCACAACACCTGGAGGAG
                      ____________________________________________________________
consensus             CTGTTGGTCTAATAGCCGCATTAGGAGGCAATGCATTTTGTGGCACAACACCTGGAGGAG
 
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JMFS087G03+           TCATACCCCTTGGTAATACACCAGGTGGGGGTGGGCCCGGACGGCCCACAGGAGGACCAG
JMFS009B12+           TCATACCCCTTGGTAACACACCAGGTGGTGGTGGGCCCGCACGGCCCACAGGAGTACCAT
JMSF029J15+           TCATACCCCTTGGTAATACACCAGGTGGGGGTGGGCCCGGACGGCCCACAGGAGGACCAG
                      ____________________________________________________________
consensus             TCATACCCCTTGGTAATACACCAGGTGGGGGTGGGCCCGGACGGCCCACAGGAGGACCAG
 
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JMFS087G03+           CAGCAAAAGGGGGTGGCTGTTGTCCAAACGGTGAGCTATGGGGAGGCTGCTGACCAAAAC
JMFS009B12+           CAGCAGAAGGCGGTGGCTGTTGTCCAAACGGTGAGCTATGGGCAGGCTCATGGCCAAAAC
JMSF029J15+           CAGCAAAAGGGGGTGGCTGTTGTCCAAACGGTGAGCTATGGGGAGGCTGCTGACCAAAAC
                      ____________________________________________________________
consensus             CAGCAAAAGGGGGTGGCTGTTGTCCAAACGGTGAGCTATGGGGAGGCTGCTGACCAAAAC
 
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JMFS087G03+           CTGAGCTAGGCCTTGGCACACTGGTGGGATTTGAATGGGGCTGATTAGGTCTATTGATTT
JMFS009B12+           CTGAGCTAGGCCTTGGCACACTGGTGGGATTTGAATGGGGATGATTAGGTCTATTGATTT
JMSF029J15+           CTGAGCTAGGCCTTGGCACACTGGTGGGATTTGAATGGGGCTGATTAGGTCTATTGATTT
JMFS041B02+                                                     GATTAGGTCTATTGATTT
                      ____________________________________________________________
consensus             CTGAGCTAGGCCTTGGCACACTGGTGGGATTTGAATGGGGCTGATTAGGTCTATTGATTT
 
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JMFS087G03+           GAAGGTTTTGCATATTATCAGCAAGTGAGTTGGGATTATAATTCGGGGGTGCATTCCC  
JMFS009B12+           CAAGGTTTGGCATATTATCAGCAAGTGAGTTGGGATTATAATTCGGGGGTGCATTCCCCG
JMSF029J15+           GAAGGTTTTGCATATTATCAGCAAGTGAGTTGGGATTATAATTCGGGGGTGCATTCCCCG
JMFS041B02+           GAAGGGTCTGCATATGATCAGCAAGTGAGTTCGGATTATAATTCGAGGGTGCATTCCCCG
                      ____________________________________________________________
consensus             GAAGGTTTTGCATATTATCAGCAAGTGAGTTGGGATTATAATTCGGGGGTGCATTCCCCG
 
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JMFS009B12+           GT-GTCATTCCGCCTGGAACTGCCATAACTATCAACGATCAAAAACCAAATTAAACACCT
JMSF029J15+           GT-CTCATTCCACCTGGAGCTGCCATAACTCTCAACGATCAAAAACCAAATTAAACACCT
JMFS041B02+           GTGGTCAGGCCCCATGTAGCTGCGATCAGTCTCAACGGTCACAGCGCGAATTAAACACGT
                      ____________________________________________________________
consensus             GT-GTCATTCCGCCTGGAGCTGCCATAACTCTCAACGATCAAAAACCAAATTAAACACCT
 
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JMFS009B12+           AGATCTCCGTAGCTCAGCTCATTCAAAATCATGGAATCCGGTAATTCAACACCGTGAGAA
JMSF029J15+           AGATCTCCGTAGCTCAGATCATTCAAAATCCTGGAATGCGGTAATTCAATACCGTGAGAA
JMFS041B02+           AGATATCCGAAGCTCAGATCATTCATAATCGTGAAATGCGGTAATTCAAAACCGTGAAGA
                      ____________________________________________________________
consensus             AGATCTCCGTAGCTCAGATCATTCAAAATCGTGGAATGCGGTAATTCAATACCGTGAGAA
 
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JMFS009B12+           ATGAATTCCGACCGGGGTCCAGTGATCCGGCGGATTTCGATCTGACAAAGCCAAACTTCA
JMSF029J15+           ATGAATTCCGACCGGGGTCCAGTGATCCGGCGGATTTCGATCTGAAAAAGCCAAACTTCA
JMFS041B02+           ATGAATTCCGCCCGGGGTACAGTGATCCGGCGGATGTGGATGTAAAGAAGGCAAACTTCA
                      ____________________________________________________________
consensus             ATGAATTCCGACCGGGGTCCAGTGATCCGGCGGATTTCGATCTGAAAAAGCCAAACTTCA
 
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JMFS009B12+           ATAGAAGATTAGATCGACTAAAACCCTAATCGCCAATTC                     
JMSF029J15+           ATAGAAGATTAGATCGACTAAAACCCTAATCGCCAATTC                     
JMFS041B02+           ATAGAAGATTAGATCGGCTCCAACCCTAATCGCCAATTCTGCCAAATCAGAGGATGCAAG
                      ____________________________________________________________
consensus             ATAGAAGATTAGATCGACTAAAACCCTAATCGCCAATTCTGCCAAATCAGAGGATGCAAG
 
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JMFS041B02+           AGGGTGGTTTATGCTGTGAAGATGTGAAGGCAAACGTAACGCGATCAGCGAAGGGGTGAT
                      ____________________________________________________________
consensus             AGGGTGGTTTATGCTGTGAAGATGTGAAGGCAAACGTAACGCGATCAGCGAAGGGGTGAT