Contig 006216:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS003H03Sequence580006216 (4)ref|XP_004229474.1|4e-49PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Solanum lycopersicum]
JMFS040C04Sequence646006216 (4)ref|XP_004229474.1|6e-69PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Solanum lycopersicum]
JMFS108B06Sequence627006216 (4)ref|XP_004229474.1|2e-64PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Solanum lycopersicum]
JMFS130A03Sequence625006216 (4)ref|XP_004229474.1|2e-64PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFS108B06+                                     TAGCAAATACCAGACCTCAGAACAGCCTTATTTG
JMFS130A03+                                     TAGCAAATACCAGACCTCAGAACAGCCTTATTTG
JMFS040C04+                       TGTCCTTACACCCATAGCAAATACCAGACCTCAGAACAGCCTTATTTG
                      ____________________________________________________________
consensus                         TGTCCTTACACCCATAGCAAATACCAGACCTCAGAACAGCCTTATTTG
 
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JMFS108B06+           CAATCTCTTCGCTATAACCACAGGCCACTATTTTCTTGATTGCACTCCTGAAAATTGCAT
JMFS130A03+           CAATCTCTTCGCTATAACCACAGGCCACTATTTTCTTGATTGCACTCCTGAAAATTGCAT
JMFS003H03+                   TCGCTATAACCACAGGCCACTATTTTCTTGATTGCACTCCTGAAAATTGCAT
JMFS040C04+           CAATCTCTTCGCTATAACCACAGGCCACTATTTTCTTGATTGCACTCCTGAAAATTGCAT
                      ____________________________________________________________
consensus             CAATCTCTTCGCTATAACCACAGGCCACTATTTTCTTGATTGCACTCCTGAAAATTGCAT
 
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JMFS108B06+           CCAAATTACTCAGTATGAGCTCCTCTAGCTGAGATTCTATGAGATCACTCCAGTCAGCAT
JMFS130A03+           CCAAATTACTCAGTATGAGCTCCTCTAGCTGAGATTCTATGAGATCACTCCAGTCAGCAT
JMFS003H03+           CCAAATTACTCAGTATGAGCTCCTCTAGCTGAGATTCTATGAGATCACTCCAGTCAGCAT
JMFS040C04+           CCAAATTACTCAGTATGAGCTCCTCTAGCTGAGATTCTATGAGATCACTCCAGTCAGCAT
                      ____________________________________________________________
consensus             CCAAATTACTCAGTATGAGCTCCTCTAGCTGAGATTCTATGAGATCACTCCAGTCAGCAT
 
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JMFS108B06+           CATGGAACTCTTCAGTGACTTCAGGTTCCTCTCTTGGCCGGCTTAGACCAGTTTCTGATG
JMFS130A03+           CATGGAACTCTTCAGTGACTTCAGGTTCCTCTCTTGGCCGGCTTAGACCAGTTTCTGATG
JMFS003H03+           CATGGAACTCTTCAGTGACTTCAGGTTCCTCTCTTGGCCGGCTTAGACCAGTTTCTGATG
JMFS040C04+           CATGGAACTCTTCAGTGACTTCAGGTTCCTCTCTTGGCCGGCTTAGACCAGTTTCTGATG
                      ____________________________________________________________
consensus             CATGGAACTCTTCAGTGACTTCAGGTTCCTCTCTTGGCCGGCTTAGACCAGTTTCTGATG
 
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JMFS108B06+           ACCCTACTGCACACGACAATCCAATGTCAAGTTTCAAAACTTCTGAAGTATCATTTTTAA
JMFS130A03+           ACCCTACTGCACACGACAATCCAATGTCAAGTTTCAAAACTTCTGAAGTATCATTTTTAA
JMFS003H03+           ACCCTACTGCACACGACAATCCAATGTCAAGTTTCAAAACTTCTGAAGTATCATTTTTAA
JMFS040C04+           ACCCTACTGCACACGACAATCCAATGTCAAGTTTCAAAACTTCTGAAGTATCATTTTTAA
                      ____________________________________________________________
consensus             ACCCTACTGCACACGACAATCCAATGTCAAGTTTCAAAACTTCTGAAGTATCATTTTTAA
 
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JMFS108B06+           CACTGCATGTATCACACCCATTGGAGCCCACAAAACTTGGGATTATTCCAAATTTATCCA
JMFS130A03+           CACTGCATGTATCACACCCATTGGAGCCCACAAAACTTGGGATTATTCCAAATTTATCCA
JMFS003H03+           CACTGCATGTATCACACCCATTGGAGCCCACAAAACTTGGGATTATTCCAAATTTATCCA
JMFS040C04+           CACTGCATGTATCACACCCATTGGAGCCCACAAAACTTGGGATTATTCCAAATTTATCCA
                      ____________________________________________________________
consensus             CACTGCATGTATCACACCCATTGGAGCCCACAAAACTTGGGATTATTCCAAATTTATCCA
 
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JMFS108B06+           CAGAAAATTCGTAGCTTGTGAATTCATTCTGAGGAGCAGAGGTTATCTTATTCGGATCAC
JMFS130A03+           CAGAAAATTCGTAGCTTGTGAATTCATTCTGAGGAGCAGAGGTTATCTTATTCGGATCAC
JMFS003H03+           CAGAAAATTCGTAGCTTGTGAATTCATTCTGAGGAGCAGAGGTTATCTTATTCGGATCAC
JMFS040C04+           CAGAAAATTCGTAGCTTGTGAATTCATTCTGAGGAGCAGAGGTTATCTTATTCGGATCAC
                      ____________________________________________________________
consensus             CAGAAAATTCGTAGCTTGTGAATTCATTCTGAGGAGCAGAGGTTATCTTATTCGGATCAC
 
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JMFS108B06+           ATAAAGGTGAATCGGCCCTGAATTTCCTCTTATTCCTACTTCCTTTTTCCGAAACTGTCA
JMFS130A03+           ATAAAGGTGAATCGGCCCTGAATTTCCTCTTATTCCTACTTCCTTTTTCCGAAACTGTCA
JMFS003H03+           ATAAAGGTGAATCGGCCCTGAATTTCCTCTTATTCCTACTTCCTTTTTCCGAAACTGTCA
JMFS040C04+           ATAAAGGTGAATCGGCCCTGAATTTCCTCTTATTCCTACTTCCTTTTTCCGAAACTGTCA
                      ____________________________________________________________
consensus             ATAAAGGTGAATCGGCCCTGAATTTCCTCTTATTCCTACTTCCTTTTTCCGAAACTGTCA
 
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JMFS108B06+           CAAGTGCCGATATTTGAGTGGCA--TTATTACTACATGCCTTGGCGACCATTGATGCCAT
JMFS130A03+           CAAGTGCCGATATTTGAGTGGCA--TTATTACTACATGCCTTGGCGACCATTGATGCCAT
JMFS003H03+           CAAGTGCCGATATTTGAGTGGCACTCTATTACTACATGCCTTGGCGACCATTGATGCCAT
JMFS040C04+           CAAGTGCCGATATTTGAGTGGCA--TTATTACTACATGCCTTGGCGACCATTGATGCCAT
                      ____________________________________________________________
consensus             CAAGTGCCGATATTTGAGTGGCA--TTATTACTACATGCCTTGGCGACCATTGATGCCAT
 
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JMFS108B06+           TCCTTAGCGGATTCGAGATACGGATGTAAGAGCAATTAAAGGTGAGATCAATCTGAGAGC
JMFS130A03+           TCCTTAGCGGATTCGAGATACGGATGTAAGAGCAATTAAAGGTGAGATCAATCTGAGAGC
JMFS003H03+           TCCTTAGCGGATTCGAGATACGGATGTAAGAGCAATTAAAGGTGAGATCAATCTGAGAGC
JMFS040C04+           TCCTTAGCGGATTCGAGATACGGATGTAAGAGCAATTAAAGGTGAGATCAATCTGAGAGC
                      ____________________________________________________________
consensus             TCCTTAGCGGATTCGAGATACGGATGTAAGAGCAATTAAAGGTGAGATCAATCTGAGAGC
 
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JMFS108B06+           ATCGGAGAGTAGACAGAATCGATAGCTCGGTTTCTTGCTTTCGTTTTC            
JMFS130A03+           ATCGGAGAGTAGACAGAATCGATAGCTCGGTTTCTTGCTTTCGTTTTC            
JMFS003H03+           ATCGGAGAGTAGACAGAATCGATAGCTCGGTTTCTTGCTTTCGTTTTC            
JMFS040C04+           ATCGGAGAGTAGACAGAATCGATAGCTCGGTTTCTTGCTTTCGTTTTCTTCCTGCAGCCC
                      ____________________________________________________________
consensus             ATCGGAGAGTAGACAGAATCGATAGCTCGGTTTCTTGCTTTCGTTTTCTTCCTGCAGCCC