Contig 006215:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS020F07Sequence616006215 (4)gb|AAO18731.1|6e-31cysteine protease [Gossypium hirsutum]
JMFS039B03Sequence614006215 (4)gb|KHG12401.1|5e-22hypothetical protein F383_03889 [Gossypium arboreum]
JMFS099E07Sequence446006215 (4)gb|KHG12401.1|3e-16hypothetical protein F383_03889 [Gossypium arboreum]
JMFS121D07Sequence287006215 (4)

Alignment

This contig is upended


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JMFS020F07+                                            TTGATCCTTAACACGAGTGACGGCCCC
JMFS039B03+                                                        ACGAGTGACGGCCCC
                      ____________________________________________________________
consensus                                              TTGATCCTTAACACGAGTGACGGCCCC
 
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JMFS020F07+           ACGCTTTCGCCAATCGACAGAGAAGGGGGCTTCACAAGACACCTTCTTCTTCTTCTCCCT
JMFS039B03+           ACGCTTTCGCCAATCGACAGAGAAGGGGGCTTCACAAGACACC-TCTTCTTCTTCTCCCT
                      ____________________________________________________________
consensus             ACGCTTTCGCCAATCGACAGAGAAGGGGGCTTCACAAGACACCTTCTTCTTCTTCTCCCT
 
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JMFS020F07+           GCCACTATGCACTGCAGACACCATCTGAATCCCTTGCTTCTTCCTAAAGGGCATCTTAAT
JMFS039B03+           GCCACTCTGCACTGCAGACACCATCTGAATCCCTTGCTTCTTCCTAAAGGGCATCTTAAT
                      ____________________________________________________________
consensus             GCCACTCTGCACTGCAGACACCATCTGAATCCCTTGCTTCTTCCTAAAGGGCATCTTAAT
 
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JMFS020F07+           CTTGGATGTGAAAACATCCTTAAACTCCTCATTCCTCAAATCAGCAAACTTGTTTAACCC
JMFS099E07+                                     CCTCATTCCTGGAATCAGCAAACTTGTTTAACCC
JMFS039B03+           CTTGGATGTGAAAACATCCTTAAACTCCTCATTCCTCAAATCAGCAAACTTGTTTAACCC
                      ____________________________________________________________
consensus             CTTGGATGTGAAAACATCCTTAAACTCCTCATTCCTCAAATCAGCAAACTTGTTTAACCC
 
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JMFS020F07+           AACTTTACCCTCCCACCTCGACCCTCTCCCCCCCACTGTCTTCTCCTTAACATACTTGAG
JMFS099E07+           AACTTTACCCTCCCACCTCGACCCTCTCCCCCCCACTGTCTTCTCCTTAACATACTTGAG
JMFS039B03+           AACTTTACCCTCCCACCTCGACCCTCTCCCCCCCACTGTCTTCTCCTTAACATACTTGAG
                      ____________________________________________________________
consensus             AACTTTACCCTCCCACCTCGACCCTCTCCCCCCCACTGTCTTCTCCTTAACATACTTGAG
 
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JMFS020F07+           ATTCCCTTTGAAGTTCTGAAACCTCTCTTCATACTCCTCCTCATCCCTGTACACCTTCCC
JMFS099E07+           ATTCCCTTTGAAGTTCTGAAACCTCTCTTCATACTCCTCCTCATCCCTGTACACCTTCCC
JMFS039B03+           ATTCCCTTTGAAGTTCTGAAACCTCTCTTCATACTCCTCCTCATCCCTGTACACCTTCCC
                      ____________________________________________________________
consensus             ATTCCCTTTGAAGTTCTGAAACCTCTCTTCATACTCCTCCTCATCCCTGTACACCTTCCC
 
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JMFS020F07+           GTTCCTCTCCTTCCACTCCTCGAACAGCCGGAGCACCTTCTCCTCCGGGACGAACCCGCC
JMFS099E07+           GTTCCTCTCCTTCCACTCCTCGAACAGCCGGAGCACCTTCTCCTCCGGGACGAACCCGCC
JMFS121D07+                       CCACTCCTCGAACAGCCGGAGCACCTTCTCCTCCGGGACGAACCCGCC
JMFS039B03+           GTTCCTCTCCTTCCACTCCTCGAACAGCCGGAGCACCTTCTCCTCCGGGACGAACCCGCC
                      ____________________________________________________________
consensus             GTTCCTCTCCTTCCACTCCTCGAACAGCCGGAGCACCTTCTCCTCCGGGACGAACCCGCC
 
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JMFS020F07+           GCCGGCGCCGGCGATGGCGAACCCGTCATAGTAACAAGAAACCCCGCCGCACCAGACCGC
JMFS099E07+           GCCGGCGCCGGCGATGGCGAACCCGTCATAGTAACAAGAAACCCCGCCGCACCAGACCGC
JMFS121D07+           GCCGGCGCCGGCGATGGCGAACCCGTCATAGTAACAAGAAACCCCGCCGCACCAGACCGC
JMFS039B03+           GCCGGCGCCGGCGATGGCGAACCCGTCATAGTAACAAGAAACCCCGCCGCACCAGACCGC
                      ____________________________________________________________
consensus             GCCGGCGCCGGCGATGGCGAACCCGTCATAGTAACAAGAAACCCCGCCGCACCAGACCGC
 
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JMFS020F07+           GGCTACGATCAAGAAAACAAGAAACCCGCAGCCCTGCAGGGAGCATTTGGTTCCCATTTA
JMFS099E07+           GGCTACGATCAAGAAAACAAGAAACCCGCAGCCCTGCAGGGAGCATTTGGTTCCCATTTA
JMFS121D07+           GGCTACGATCAAGAAAACAAGAAACCCGCAGCCCTGCAGGGAGCATTTGGTTCCCATTTA
JMFS039B03+           GGCTACGATCAAGAAAACAAGAAACCCGCAGCCCTGCAGGGAGCATTTGGTTCCCATTTA
                      ____________________________________________________________
consensus             GGCTACGATCAAGAAAACAAGAAACCCGCAGCCCTGCAGGGAGCATTTGGTTCCCATTTA
 
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JMFS020F07+           CTCGCCGCATTAAACAATCAGTGATATGATTGCTGCTTACAGTCGCCGGAGGCCGGGGCT
JMFS099E07+           CTCGCCGCATTAAACAATCAGTGATATGATTGCTGCTTACAGTCGCCGGAGGCCGGGGCT
JMFS121D07+           CTCGCCGCATTAAACAATCAGTGATATGATTGCTGCTTACAGTCGCCGGAGGCCGGGGCT
JMFS039B03+           CTCGCCGCATTAAACAATCAGTGATATGATTGCTGCTTACAGTCGCCGGAGGCCGGGGCT
                      ____________________________________________________________
consensus             CTCGCCGCATTAAACAATCAGTGATATGATTGCTGCTTACAGTCGCCGGAGGCCGGGGCT
 
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JMFS020F07+           TTGCATGTCCAAAAACTCTTCGCCGGCGCTGTAAATACACTCTTTTTTC           
JMFS099E07+           TTGCATGTCCAAAAACTCTTCGCCGGCGCTGTAAATACACTCTTTTTTC           
JMFS121D07+           TTGCATGTCCAAAAACTCTTCGCCGGCGCTGTAAATACACTCTTTTTTCGGT        
JMFS039B03+           TTGCATGTCCAAAAACTCTTCGCCGGCGCTGTAAATACACTCTTTTTTCGGTGAGTTGAC
                      ____________________________________________________________
consensus             TTGCATGTCCAAAAACTCTTCGCCGGCGCTGTAAATACACTCTTTTTTCGGTGAGTTGAC