Contig 006214:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS008B02Sequence627006214 (4)ref|XP_002465264.1|3e-118hypothetical protein SORBIDRAFT_01g035130 [Sorghum bicolor] gb|EER92262.1| hypot
JMFS037C10Sequence616006214 (4)gb|KJB25891.1|5e-125hypothetical protein B456_004G213900 [Gossypium raimondii]
JMFS129H09Sequence621006214 (4)ref|XP_002465264.1|1e-121hypothetical protein SORBIDRAFT_01g035130 [Sorghum bicolor] gb|EER92262.1| hypot
JMFS166D05Sequence624006214 (4)ref|XP_002465264.1|6e-122hypothetical protein SORBIDRAFT_01g035130 [Sorghum bicolor] gb|EER92262.1| hypot

Alignment

This contig is upended


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JMFS037C10+                                                       GCTGGTGATTTCAAAA
                      ____________________________________________________________
consensus                                                         GCTGGTGATTTCAAAA
 
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JMFS129H09+                              CTTGAATTTCTGCAAGTGCTGCAACAGCATNTGCAACAACC
JMFS166D05+                           TCTCTTGAATTTCTGCAAGTGCTGCAACAGCATTTGCAACAACC
JMFS037C10+           ATGGGTCTACTACTGTTCTCTTGAATTTCTGCAAGTGCTGCAACAGCATTTGCAACAACC
                      ____________________________________________________________
consensus             ATGGGTCTACTACTGTTCTCTTGAATTTCTGCAAGTGCTGCAACAGCATTTGCAACAACC
 
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JMFS129H09+           ATAGGATTGTTGTCAGATATCAAATCAGTGAGAGCATCCAGGAAACCTCTGTCCTCAACA
JMFS166D05+           ATAGGATTGTTGTCAGATATCAAATCAGTGAGAGCATCCAGGAAACCTCTGTCCTCAACA
JMFS008B02+                ATTGTTGTCAGATTTCAAATCAGTGAGAGCATCCAGGAAACCTCTGTCCTCAACA
JMFS037C10+           ATAGGATTGTTGTCAGATATCAAATCAGTGAGAGCATCCAGGAAACCTCTGTCCTCAACA
                      ____________________________________________________________
consensus             ATAGGATTGTTGTCAGATATCAAATCAGTGAGAGCATCCAGGAAACCTCTGTCCTCAACA
 
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JMFS129H09+           AGCTCAGCATTTATGTCATAAAGTTTAGCAACGCATACAGCTGCAGTCTTTCGAACATAT
JMFS166D05+           AGCTCAGCATTTATGTCATAAAGTTTAGCAACGCATACAGCTGCAGTCTTTCGAACATAT
JMFS008B02+           AGCTCAGCATTTATGTCATAAAGTTTAGCAACGCATACAGCTGCAGTCTTTCGAACATAT
JMFS037C10+           AGCTCAGCATTTATGTCATAAAGTTTAGCAACGCATACAGCTGCAGTCTTTCGAACATAT
                      ____________________________________________________________
consensus             AGCTCAGCATTTATGTCATAAAGTTTAGCAACGCATACAGCTGCAGTCTTTCGAACATAT
 
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JMFS129H09+           GGGTCATCATCCTTGAGACACCTCTGAAGAGGATCACATAAATATTCAGTGATCTTGTCA
JMFS166D05+           GGGTCATCATCCTTGAGACACCTCTGAAGAGGATCACATAAATATTCAGTGATCTTGTCA
JMFS008B02+           GGGTCATCATCCTTGAGACACCTCTGAAGAGGATCACATAAATATTCAGTGATCTTGTCA
JMFS037C10+           GGGTCATCATCCTTGAGACACCTCTGAAGAGGATCACATAAATATTCAGTGATCTTGTCA
                      ____________________________________________________________
consensus             GGGTCATCATCCTTGAGACACCTCTGAAGAGGATCACATAAATATTCAGTGATCTTGTCA
 
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JMFS129H09+           ACACGAATGCATCCCATTGTCCGTACAGCCAAAGCACGGATCAGGGGGTTTGGGTCCTGT
JMFS166D05+           ACACGAATGCATCCCATTGTCCGTACAGCCAAAGCACGGATCAGGGGGTTTGGGTCCTGT
JMFS008B02+           ACACGAATGCATCCCATTGTCCGTACAGCCAAAGCACGGATCAGGGGGTTTGGGTCCTGT
JMFS037C10+           ACACGAATGCATCCCATTGTCCGTACAGCCAAAGCACGGATCAGGGGGTTTGGGTCCTGT
                      ____________________________________________________________
consensus             ACACGAATGCATCCCATTGTCCGTACAGCCAAAGCACGGATCAGGGGGTTTGGGTCCTGT
 
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JMFS129H09+           GAATCCTTCACAAATGTATTTACTGCAAGTATTGCAAGATCAGGCTGGCTTTTAGCATAA
JMFS166D05+           GAATCCTTCACAAATGTATTTACTGCAAGTATTGCAAGATCAGGCTGGCTTTTAGCATAA
JMFS008B02+           GAATCCTTCACAAATGTATTTACTGCAAGTATTGCAAGATCAGGCTGGCTTTTAGCATAA
JMFS037C10+           GAATCCTTCACAAATGTATTTACTGCAAGTATTGCAAGATCAGGCTGGCTTTTAGCATAA
                      ____________________________________________________________
consensus             GAATCCTTCACAAATGTATTTACTGCAAGTATTGCAAGATCAGGCTGGCTTTTAGCATAA
 
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JMFS129H09+           TTGATAAGATACAAGTAAACTAGTTTCTTAAGCTCCAAAGTTTCTGTCTGCATACAATTC
JMFS166D05+           TTGATAAGATACAAGTAAACTAGTTTCTTAAGCTCCAAAGTTTCTGTCTGCATACAATTC
JMFS008B02+           TTGATAAGATACAAGTAAACTAGTTTCTTAAGCTCCAAAGTTTCTGTCTGCATACAATTC
JMFS037C10+           TTGATAAGATACAAGTAAACTAGTTTCTTAAGCTCCAAAGTTTCTGTCTGCATACAATTC
                      ____________________________________________________________
consensus             TTGATAAGATACAAGTAAACTAGTTTCTTAAGCTCCAAAGTTTCTGTCTGCATACAATTC
 
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JMFS129H09+           ACAACGTCTGTGAAGAGTGAGGAAACATCCTTCCCAACAGTCATTGCAGCAATCACCTTT
JMFS166D05+           ACAACGTCTGTGAAGAGTGAGGAAACATCCTTCCCAACAGTCATTGCAGCAATCACCTTT
JMFS008B02+           ACAACGTCTGTGAAGAGTGAGGAAACATCCTTCCCAACAGTCATTGCAGCAATCACCTTT
JMFS037C10+           ACAACGTCTGTGAAGAGTGAGGAAACATCCTTCCCAACAGTCATTGCAGCAATCACCTTT
                      ____________________________________________________________
consensus             ACAACGTCTGTGAAGAGTGAGGAAACATCCTTCCCAACAGTCATTGCAGCAATCACCTTT
 
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JMFS129H09+           TTGACAGCATCTTTTCGCTTGTCCTTGTGCTGAGAATTTAGCTCTTCCTTGAGCTCAGGA
JMFS166D05+           TTGACAGCATCTTTTCGCTTGTCCTTGTGCTGAGAATTTAGCTCTTCCTTGAGCTCAGGA
JMFS008B02+           TTGACAGCATCTTTTCGCTTGTCCTTGTGCTGAGAATTTAGCTCTTCCTTGAGCTCAGGA
JMFS037C10+           TTGACAGCATCTTTTCGCTTGTCCTTGTGCTGAGAATTTAGCTCTTCCTTGAGCTCAGGA
                      ____________________________________________________________
consensus             TTGACAGCATCTTTTCGCTTGTCCTTGTGCTGAGAATTTAGCTCTTCCTTGAGCTCAGGA
 
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JMFS129H09+           ATTTCACCCTTCTTGGTGGTGGAGAAGTATTTCGAATCGTGGCCGCTCATCTC       
JMFS166D05+           ATTTCACCCTTCTTGGTGGTGGAGAAGTATTTCGAATCGTGGCCGCTCATCTC       
JMFS008B02+           ATTTCACCCTTCTTGGTGGTGGAGAAGTATTTCGAATCGTGGCCGCTCATCTC       
JMFS037C10+           ATTTCACCCTTCTTGGTGGTGGAGAAGTATTTCGAATCGTGGCCGCTCATCTCCGATTAG
                      ____________________________________________________________
consensus             ATTTCACCCTTCTTGGTGGTGGAGAAGTATTTCGAATCGTGGCCGCTCATCTCCGATTAG