| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF046J15 | Sequence | 521 | 006202 (4) | ref|XP_011094134.1| | 1e-26 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A | 421 | 005628 (3) | gb|KJB82438.1| | 1e-29 | hypothetical protein B456_013G195600 [Gossypium raimondii] |
| JMFS009B07 | Sequence | 629 | 006202 (4) | ref|XP_010266686.1| | 6e-27 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A | |||||
| JMFS024G09 | Sequence | 624 | 006202 (4) | ref|XP_011094134.1| | 5e-22 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A | |||||
| JMSF036D04 | Sequence | 687 | 006202 (4) | ref|XP_010320756.1| | 2e-54 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A | 661 | 005628 (3) | ref|XP_009598646.1| | 1e-62 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase A |
This contig is upended
. : . : . : . : . : . :
JMSF036D04+ TCAAAACCGCCAAATCTGAAAGCAAACCAAGCCCATCTG
____________________________________________________________
consensus TCAAAACCGCCAAATCTGAAAGCAAACCAAGCCCATCTG
. : . : . : . : . : . :
JMSF036D04+ GAAGCCTGCCAGTGAACTTATTCCCATCGAGTATAAGTGTTTGGAGGTTAATCAACGATG
____________________________________________________________
consensus GAAGCCTGCCAGTGAACTTATTCCCATCGAGTATAAGTGTTTGGAGGTTAATCAACGATG
. : . : . : . : . : . :
JMSF036D04+ AGATTTGTCTCGGGATGGCGTTGTGGAAGAAATTGGAGGTCAGGTCAAGTATCTCGAGTC
____________________________________________________________
consensus AGATTTGTCTCGGGATGGCGTTGTGGAAGAAATTGGAGGTCAGGTCAAGTATCTCGAGTC
. : . : . : . : . : . :
JMSF036D04+ CTGATAATCTCGAAATTTTGCCAGGCAACGGCCCCCATAAACCAAGAGACACTAACTTGA
JMFS009B07+ GCCAGGCAACGGCCCCCATAAACCAAGAGACACTAACTTGA
____________________________________________________________
consensus CTGATAATCTCGAAATTTTGCCAGGCAACGGCCCCCATAAACCAAGAGACACTAACTTGA
. : . : . : . : . : . :
JMSF036D04+ GGACCTTCAAGCTCGGGAGCTTAACGAGGCTACTAACAAAGGCATCAATGGAAAAGTTTT
JMFF046J15+ CGGGAGCTTAACGAGGCTACTAACAAAGGCATCAATGGAAAAGTNTT
JMFS009B07+ GGACCTTCAAGCTCGGGAGCTTAACGAGGCTACTAACAAAGGCATCAATGGAAAAGTTTT
JMFS024G09+ CAAAGGCATCAATGGAANAGTTTT
____________________________________________________________
consensus GGACCTTCAAGCTCGGGAGCTTAACGAGGCTACTAACAAAGGCATCAATGGAAAAGTTTT
. : . : . : . : . : . :
JMSF036D04+ CGGGCAATTGAGGCGTGCCCTTCTCGCCGATTATATGCAACTGAGTTATGCTTCCTCCAT
JMFF046J15+ CGGGCAATTGAGGCGTGCCCTTCTCGCCGATTATATGCAACTGAGTTATGCTTCCTCCAT
JMFS009B07+ CGGGCAATTGAGGCGTGCCCTTCTCGCCGATTATATGCAACTGAGTTATGCTTCCTCCAT
JMFS024G09+ CGGGCAATTGAGGCGTGCCCTTCTCGCCGATTATATGCAACTGAGTTATGCTTCCTCCAT
____________________________________________________________
consensus CGGGCAATTGAGGCGTGCCCTTCTCGCCGATTATATGCAACTGAGTTATGCTTCCTCCAT
. : . : . : . : . : . :
JMSF036D04+ AGCAGACAACCGTAACTGAAGAACTCGTTTCAGCATTGCAGAAATCCGTGTCGTTCTTCC
JMFF046J15+ AGCAGACAACCGTAACTGAAGAACTCGTTTCAGCATTGCAGAAATCCGTGTCGTTCTTCC
JMFS009B07+ AGCAGACAACCGTAACTGAAGAACTCGTTTCAGCATTGCAGAAATCCGTGTCGTTCTTCC
JMFS024G09+ AGCAGACAACCGTAACTGAAGAACTCGTTTCAGCATTGCAGAAATCCGTGTCGTTCTTCC
____________________________________________________________
consensus AGCAGACAACCGTAACTGAAGAACTCGTTTCAGCATTGCAGAAATCCGTGTCGTTCTTCC
. : . : . : . : . : . :
JMSF036D04+ AGCTCCTCAAGGAAGCCGGGGAGTTAAGAAGCTCTCGAATCCTCAGAAGTGCTCGAACTT
JMFF046J15+ AGCTCCTCAAGGAAGCCGGGGAGTTAAGAAGCTCTCGAATCCTCAGAAGTGCTCGAACTT
JMFS009B07+ AGCTCCTCAAGGAAGCCGGGGAGTTAAGAAGCTCTCGAATCCTCAGAAGTGCTCGAACTT
JMFS024G09+ AGCTCCTCAAGGAAGCCGGGGAGTTAAGAAGCTCTCGAATCCTCAGAAGTGCTCGAACTT
____________________________________________________________
consensus AGCTCCTCAAGGAAGCCGGGGAGTTAAGAAGCTCTCGAATCCTCAGAAGTGCTCGAACTT
. : . : . : . : . : . :
JMSF036D04+ CAAAGGATTGTGCTTGTTCGGAATACCCAACTAACGATGACAAAACAAGACAGACTATAA
JMFF046J15+ CAAAGGATTGTGCTTGTTCGGAATACCCAACTAACGATGACAAAACAAGACAGACTATAA
JMFS009B07+ CAAAGGATTGTGCTTGTTCGGAATACCCAACTAACGATGACAAAACAAGACAGACTATAA
JMFS024G09+ CAAAGGATTGTGCTTGTTCGGAATACCCAACTAACGATGACAAAACAAGACAGACTATAA
____________________________________________________________
consensus CAAAGGATTGTGCTTGTTCGGAATACCCAACTAACGATGACAAAACAAGACAGACTATAA
. : . : . : . : . : . :
JMSF036D04+ CAAGTTCCCTAAGGCCAAAACTCCCCGCCATTGCCAAAAACTACAGAAACACGTTATCTG
JMFF046J15+ CAAGTTCCCTAAGGCCAAAACTCCCCGCCATTGCCAAAAACTACAGAAACACGTTATCTG
JMFS009B07+ CAAGTTCCCTAAGGCCAAAACTCCCCGCCATTGCCAAAAACTACAGAAACACGTTATCTG
JMFS024G09+ CAAGTTCCCTAAGGCCAAAACTCCCCGCCATTGCCAAAAACTACAGAAACACGTTATCTG
____________________________________________________________
consensus CAAGTTCCCTAAGGCCAAAACTCCCCGCCATTGCCAAAAACTACAGAAACACGTTATCTG
. : . : . : . : . : . :
JMSF036D04+ GGGAAGAACTAACTCT
JMFF046J15+ GGGAAGAACTAACTCT
JMFS009B07+ GGGAAGAACTAACTCT
JMFS024G09+ GGGAAGAACTAACTCTGAAACACAATAAAAATACAGATAAATCTTATGATTTCTGCTCTA
____________________________________________________________
consensus GGGAAGAACTAACTCTGAAACACAATAAAAATACAGATAAATCTTATGATTTCTGCTCTA
. : . : . : . : . : . :
JMFS024G09+ AGATTACACTGAAACTTAGGGGCAAGAAAATTGGGCAGAAAAAAATTTCAAGAATCATGC
____________________________________________________________
consensus AGATTACACTGAAACTTAGGGGCAAGAAAATTGGGCAGAAAAAAATTTCAAGAATCATGC
. : . : . : . : . : . :
JMFS024G09+ TTAAAACAAGAAAACAATGCAGCCAAATATCCATATAACTATCAGAAATAATATAATAAG
____________________________________________________________
consensus TTAAAACAAGAAAACAATGCAGCCAAATATCCATATAACTATCAGAAATAATATAATAAG
. : . : . : . : . : . :
JMFS024G09+ TTCTGGAAATTGAAAGCTCACCTCTATCTGCCAGAGAAATCAGCCAATTCAAGATTCTGG
____________________________________________________________
consensus TTCTGGAAATTGAAAGCTCACCTCTATCTGCCAGAGAAATCAGCCAATTCAAGATTCTGG
. : . : . : . : . : . :
JMFS024G09+ GGAAAATCCTCTGAAAAATAGAGCAAAATTAGGCTGAAATTAAAACAAGGTAGCAATATC
____________________________________________________________
consensus GGAAAATCCTCTGAAAAATAGAGCAAAATTAGGCTGAAATTAAAACAAGGTAGCAATATC