Contig 006200:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS023F01Sequence569006200 (3)ref|XP_004173517.1|2e-45PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like, partial
JMFS025D12Sequence627006200 (3)ref|XP_004173517.1|5e-55PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like, partial
JMSF030B01Sequence468006200 (3)ref|XP_004173517.1|9e-53PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like, partial

Alignment

This contig is upended


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JMSF030B01+                                                                 GCTTCA
JMFS025D12+                                            ATGTGATGATAAACTTTTATGGCTTCA
                      ____________________________________________________________
consensus                                              ATGTGATGATAAACTTTTATGGCTTCA
 
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JMSF030B01+           TCAACTTCTCCGGAATCACAATGTGAAACAATAAGGTTGTTGTAGGATACGACATTAGGA
JMFS025D12+           TCAACTTCTCCGGAATCACAATGTGAAACAATAAGGTTGTTGTAGGATACGACATTAGGA
JMFS023F01+                                          TAAGGTTGTTGTAGGATACGACATTAGGA
                      ____________________________________________________________
consensus             TCAACTTCTCCGGAATCACAATGTGAAACAATAAGGTTGTTGTAGGATACGACATTAGGA
 
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JMSF030B01+           ACAATGTTAGACTGATTGAAGAAGTACTGAAAAAGGGCNTTCGCATCGTTATACCTGCCA
JMFS025D12+           ACAATGTTAGACTGATTGAAGAAGTACTGAAAAAGGGCCTTCGCATCGTTATACCTGCCA
JMFS023F01+           ACAATGTTAGACTGATTGAAGAAGTACTGAAAAAGGGCCTTCGCATCGTTATACCTGCCA
                      ____________________________________________________________
consensus             ACAATGTTAGACTGATTGAAGAAGTACTGAAAAAGGGCCTTCGCATCGTTATACCTGCCA
 
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JMSF030B01+           GCTCGGTACATAGCGGCGATAATGGCGTTGCAGGTGAAGACTGTGGGGCGGGTGTTTGAG
JMFS025D12+           GCTCGGTACATAGCGGCGATAATGGCGTTGCAGGTGAAGACTGTGGGGCGGGTGTTTGAG
JMFS023F01+           GCTCGGTACATAGCGGCGATAATGGCGTTGCAGGTGAAGACTGTGGGGCGGGTGTTTGAG
                      ____________________________________________________________
consensus             GCTCGGTACATAGCGGCGATAATGGCGTTGCAGGTGAAGACTGTGGGGCGGGTGTTTGAG
 
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JMSF030B01+           AACACCGAGTGCCGAGCAACAGCTGCGGCGGAGTCGAGGTCTCCAGCTCGTATGAGGGAC
JMFS025D12+           AACACCGAGTGCCGAGCAACAGCTGCGGCGGAGTCGAGGTCTCCAGCTCGTATGAGGGAC
JMFS023F01+           AACACCGAGTGCCGAGCAACAGCTGCGGCGGAGTCGAGGTCTCCAGCTCGTATGAGGGAC
                      ____________________________________________________________
consensus             AACACCGAGTGCCGAGCAACAGCTGCGGCGGAGTCGAGGTCTCCAGCTCGTATGAGGGAC
 
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JMSF030B01+           TGCACGCGGTTGTGAAGGTTCAGTCTAGGCCCAACTAGCGCGGAGGTGGAGTCAGGGAGG
JMFS025D12+           TGCACGCGGTTGTGAAGGTTCAGTCTAGGCCCAACTAGCGCGGAGGTGGAGTCAGGGAGG
JMFS023F01+           TGCACGCGGTTGTGAAGGTTCAGTCTAGGCCCAACTAGCGCGGAGGTGGAGTCAGGGAGG
                      ____________________________________________________________
consensus             TGCACGCGGTTGTGAAGGTTCAGTCTAGGCCCAACTAGCGCGGAGGTGGAGTCAGGGAGG
 
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JMSF030B01+           CGAGACCGGGGATCATCGGAGGGAGGAGGCCTCGGAGCAGGGTCGCGGCGTAGGGCACCA
JMFS025D12+           CGAGACCGGGGATCATCGGAGGGAGGAGGCCTCGGAGCAGGGTCGCGGCGTAGGGCACCA
JMFS023F01+           CGAGACCGGGGATCATCGGAGGGAGGAGGCCTCGGAGCAGGGTCGCGGCGTAGGGCACCA
                      ____________________________________________________________
consensus             CGAGACCGGGGATCATCGGAGGGAGGAGGCCTCGGAGCAGGGTCGCGGCGTAGGGCACCA
 
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JMSF030B01+           AGTGGAGGCTCGATGCGGAGCCGGCGCTTCCTGCGACGGCGCTCCGCTGCGGCCTCCTCG
JMFS025D12+           AGTGGAGGCTCGATGCGGAGCCGGCGCTTCCTGCGACGGCGCTCCGCTGCGGCCTCCTCG
JMFS023F01+           AGTGGAGGCTCGATGCGGAGCCGGCGCTTCCTGCGACGGCGCTCCGCTGCGGCCTCCTCG
                      ____________________________________________________________
consensus             AGTGGAGGCTCGATGCGGAGCCGGCGCTTCCTGCGACGGCGCTCCGCTGCGGCCTCCTCG
 
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JMSF030B01+           GCAGAGGAGAAGGCAAATGATCGGTGAGGGAGAAGAAAGCTG                  
JMFS025D12+           GCAGAGGAGAAGGCAAATGATCGGTGAGGGAGAAGAAAGCTGGGATTTTGTAGGTGATTT
JMFS023F01+           GCAGAGGAGAAGGCAAATGATCGGTGAGGGAGAAGAAAGCTGGGATTTTGTAGGTGATTT
                      ____________________________________________________________
consensus             GCAGAGGAGAAGGCAAATGATCGGTGAGGGAGAAGAAAGCTGGGATTTTGTAGGTGATTT
 
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JMFS025D12+           ACGGAGATGAACTGAGTTCGGGCGGCGGCGACGCTCGTGGTGGCGCTAGCGGAGGAACGG
JMFS023F01+           ACGGAGATGAACTGAGTTCGGGCGGCGGCGACGCTCGTGGTGGCGCTAGCGGAGGAACGG
                      ____________________________________________________________
consensus             ACGGAGATGAACTGAGTTCGGGCGGCGGCGACGCTCGTGGTGGCGCTAGCGGAGGAACGG
 
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JMFS025D12+           CGCAGTGAACGGAGGAGGATCCGATACAGAGTCATGGCGACTGTGCTTGGGGACGAAGTT
JMFS023F01+           CGCAGTGAACGGAGGAGGATCCGATACAGAGTCATGGCGACTGTGCTTGGGGACGAAGTT
                      ____________________________________________________________
consensus             CGCAGTGAACGGAGGAGGATCCGATACAGAGTCATGGCGACTGTGCTTGGGGACGAAGTT