Contig 006199:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS022E02Sequence627006199 (3)ref|XP_009804947.1|2e-31PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 [Nicotiana sylvestr
JMFS069E12Sequence640006199 (3)ref|XP_009804947.1|3e-38PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 [Nicotiana sylvestr
JMFS114G08Sequence561006199 (3)ref|XP_009804947.1|2e-31PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 [Nicotiana sylvestr

Alignment

This contig is upended


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JMFS114G08+                                                            TTGATAGTAGG
JMFS069E12+                              AGTGTTAAATCCCATGGACCTGGCATATTCTTGATAGTAGG
JMFS022E02+                                                            TTGATAGTAGG
                      ____________________________________________________________
consensus                                AGTGTTAAATCCCATGGACCTGGCATATTCTTGATAGTAGG
 
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JMFS114G08+           CATATGCCTCCCCATGTGATTCAAATTCCATACCAGCAAGTGGCTCAAGATTTACATCCT
JMFS069E12+           CATATGCCTCCCCATGTGATTCAAATTCCATACCAGCAAGTGGCTCAAGATTTACATCCT
JMFS022E02+           CATATGCCTCCCCATGTGATTCAAATTCCATACCAGCAAGTGGCTCAAGATTTACATCCT
                      ____________________________________________________________
consensus             CATATGCCTCCCCATGTGATTCAAATTCCATACCAGCAAGTGGCTCAAGATTTACATCCT
 
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JMFS114G08+           CTTTAAATTCTCCCATATCGCCCATGGGAGAGTTCATCTCCCCTCCATCTTCAACATGTA
JMFS069E12+           CTTTAAATTCTCCCATATCGCCCATGGGAGAGTTCATCTCCCCTCCATCTTCAACATGTA
JMFS022E02+           CTTTAAATTCTCCCATATCGCCCATGGGAGAGTTCATCTCCCCTCCATCTTCAACATGTA
                      ____________________________________________________________
consensus             CTTTAAATTCTCCCATATCGCCCATGGGAGAGTTCATCTCCCCTCCATCTTCAACATGTA
 
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JMFS114G08+           TTTTCTCTTCAATGTCCATATCTCCACCCACTTCGACACCATCGAGTTTCTCTTCATGAT
JMFS069E12+           TTTTCTCTTCAATGTCCATATCTCCACCCACTTCGACACCATCGAGTTTCTCTTCATGAT
JMFS022E02+           TTTTCTCTTCAATGTCCATATCTCCACCCACTTCGACACCATCGAGTTTCTCTTCATGAT
                      ____________________________________________________________
consensus             TTTTCTCTTCAATGTCCATATCTCCACCCACTTCGACACCATCGAGTTTCTCTTCATGAT
 
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JMFS114G08+           CAAGCAAGTTAACAATACCATTTGTTTCTTCTTCTTCTTTATCATGATCTCCTGAAGGTA
JMFS069E12+           CAAGCAAGTTAACAATACCATTTGTTTCTTCTTCTTCTTTATCATGATCTCCTGAAGGTA
JMFS022E02+           CAAGCAAGTTAACAATACCATTTGTTTCTTCTTCTTCTTTATCATGATCTCCTGAAGGTA
                      ____________________________________________________________
consensus             CAAGCAAGTTAACAATACCATTTGTTTCTTCTTCTTCTTTATCATGATCTCCTGAAGGTA
 
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JMFS114G08+           ATCTAAGATCGATATCCATGTTGACAACCAACTATTGGCTTTCTATCTAAGTTATGCAGA
JMFS069E12+           ATCTAAGATCGATATCCATGTTGACAACCAACTATTGGCTTTCTATCTAAGTTATGCAGA
JMFS022E02+           ATCTAAGATCGATATCCATGTTGACAACCAACTATTGGCTTTCTATCTAAGTTATGCAGA
                      ____________________________________________________________
consensus             ATCTAAGATCGATATCCATGTTGACAACCAACTATTGGCTTTCTATCTAAGTTATGCAGA
 
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JMFS114G08+           CCTGTAATCTAAACTCAGGAGCGTCTGGTGTATGTATATGTTGTATCTATGTTTTCTCAC
JMFS069E12+           CCTGTAATCTAAACTCAGGAGCGTCTGGTGTATGTATATGTTGTATCTATGTTTTCTCAC
JMFS022E02+           CCTGTAATCTAAACTCAGGAGCGTCTGGTGTATGTATATGTTGTATCTATGTTTTCTCAC
                      ____________________________________________________________
consensus             CCTGTAATCTAAACTCAGGAGCGTCTGGTGTATGTATATGTTGTATCTATGTTTTCTCAC
 
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JMFS114G08+           GCACCTCCACTCGATCTGCAAACTGGAATTTCACGCGAGGGTCTCTGGCGAGTGGACTGG
JMFS069E12+           GCACCTCCACTCGATCTGCAAACTGGAATTTCACGCGAGGGTCTCTGGCGAGTGGACTGG
JMFS022E02+           GCACCTCCACTCGATCTGCAAACTGGAATTTCACGCGAGGGTCTCTGGCGAGTGGACTGG
                      ____________________________________________________________
consensus             GCACCTCCACTCGATCTGCAAACTGGAATTTCACGCGAGGGTCTCTGGCGAGTGGACTGG
 
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JMFS114G08+           AATTTTTCCCCCCTTGGCTTCTGCTAAATTAGGGTTTGTTTGTTGTTCTTCTTCCTCGCA
JMFS069E12+           AATTTTTCCCCCCTTGGCTTCTGCTAAATTAGGGTTTGTTTGTTGTTCTTCTTCCTCGCA
JMFS022E02+           AATTTTTCCCCCCTTGGCTTCTGCTAAATTAGGGTTTGTTTGTTGTTCTTCTTCCTCGCA
                      ____________________________________________________________
consensus             AATTTTTCCCCCCTTGGCTTCTGCTAAATTAGGGTTTGTTTGTTGTTCTTCTTCCTCGCA
 
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JMFS114G08+           GCTGCTCTTCACTCGCCCCCTTTTCGTCACTCGCTGGTGAATCCGCCGCGCGTGACCGCC
JMFS069E12+           GCTGCTCTTCACTCGCCCCCTTTTCGTCACTCGCTGGTGAATCCGCCGCGCGTGACCGCC
JMFS022E02+           GCTGCTCTTCACTCGCCCCCTTTTCGTCACTCGCTGGTGAATCCGCCGCGCGTGACCGCC
                      ____________________________________________________________
consensus             GCTGCTCTTCACTCGCCCCCTTTTCGTCACTCGCTGGTGAATCCGCCGCGCGTGACCGCC
 
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JMFS114G08+           CTCTCCGCC                                                   
JMFS069E12+           CTCTCCGCCTCCTCTTCGTTCGTCCCCTTCTCGGCCTTGCGGTCAACGATGAAAACCAA 
JMFS022E02+           CTCTCCGCCTCCTCTTCGTTCGTCCCCTTCTCGGCCTTGCGGTCAACGATGAAAACCAAG
                      ____________________________________________________________
consensus             CTCTCCGCCTCCTCTTCGTTCGTCCCCTTCTCGGCCTTGCGGTCAACGATGAAAACCAAG