Contig 006195:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS018F07Sequence617006195 (3)ref|XP_009610632.1|56.6PREDICTED: uncharacterized protein LOC104104290 [Nicotiana tomentosiformis]
JMFS076E06Sequence621006195 (3)ref|XP_009610632.1|57.8PREDICTED: uncharacterized protein LOC104104290 [Nicotiana tomentosiformis]
JMFS133B12Sequence619006195 (3)ref|XP_009610632.1|57.8PREDICTED: uncharacterized protein LOC104104290 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS133B12+                                             AAGCCTCGCGATTAGACCCATTCGAC
JMFS076E06+                                             AAGCCTCGCGATTAGACCCATTCGAC
JMFS018F07+                                                      GATTAGACCCATTCGAC
                      ____________________________________________________________
consensus                                               AAGCCTCGCGATTAGACCCATTCGAC
 
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JMFS133B12+           TCAGGCGATGGAACATTCAGGTATCCAGAGACATCTCCGTAAATCTGCTGAGATTCCGGC
JMFS076E06+           TCAGGCGATGGAACATTCAGGTATCCAGAGACATCTCCGTAAATCTGCTGAGATTCCGGC
JMFS018F07+           TCAGGCGATGGAACATTCAGGTATCCAGAGACATCTCCGTAAATCTGCTGAGATTCCGGC
                      ____________________________________________________________
consensus             TCAGGCGATGGAACATTCAGGTATCCAGAGACATCTCCGTAAATCTGCTGAGATTCCGGC
 
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JMFS133B12+           GAGTTCACGACCAAAACCCTAGAAGAGCTCGAGCTTAGCTCCGGCGAAACAGAATTCAGA
JMFS076E06+           GAGTTCACGACCAAAACCCTAGAAGAGCTCGAGCTTAGCTCCGGCGAAACAGAATTCAGA
JMFS018F07+           GAGTTCACGACCAAAACCCTAGAAGAGCTCGAGCTTAGCTCCGGCGAAACAGAATTCAGA
                      ____________________________________________________________
consensus             GAGTTCACGACCAAAACCCTAGAAGAGCTCGAGCTTAGCTCCGGCGAAACAGAATTCAGA
 
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JMFS133B12+           AGCATGGCGTCTCCGGCAATCTGATCGGCGGAGAAATGACACAGTTCTGAAGACGACGAC
JMFS076E06+           AGCATGGCGTCTCCGGCAATCTGATCGGCGGAGAAATGACACAGTTCTGAAGACGACGAC
JMFS018F07+           AGCATGGCGTCTCCGGCAATCTGATCGGCGGAGAAATGACACAGTTCTGAAGACGACGAC
                      ____________________________________________________________
consensus             AGCATGGCGTCTCCGGCAATCTGATCGGCGGAGAAATGACACAGTTCTGAAGACGACGAC
 
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JMFS133B12+           TTGAAAATGCTAGCAGAATTCTTAAACGCCCCGATCGGTTCACAGCCAGACCCGGGTTGC
JMFS076E06+           TTGAAAATGCTAGCAGAATTCTTAAACGCCCCGATCGGTTCACAGCCAGACCCGGGTTGC
JMFS018F07+           TTGAAAATGCTAGCAGAATTCTTAAACGCCCCGATCGGTTCACAGCCAGACCCGGGTTGC
                      ____________________________________________________________
consensus             TTGAAAATGCTAGCAGAATTCTTAAACGCCCCGATCGGTTCACAGCCAGACCCGGGTTGC
 
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JMFS133B12+           ACGTAACAAGTGGGACCTACATCAAGCTGCGCCTGCACCGGATCACAACCGGCCTGGTCG
JMFS076E06+           ACGTAACAAGTGGGACCTACATCAAGCTGCGCCTGCACCGGATCACAACCGGCCTGGTCG
JMFS018F07+           ACGTAACAAGTGGGACCTACATCAAGCTGCGCCTGCACCGGATCACAACCGGCCTGGTCG
                      ____________________________________________________________
consensus             ACGTAACAAGTGGGACCTACATCAAGCTGCGCCTGCACCGGATCACAACCGGCCTGGTCG
 
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JMFS133B12+           AGCGAAACTGGTAGGAAATTTTGACTGAGAGAATTATCCGCACCGAAGGGAAGGCAGAAA
JMFS076E06+           AGCGAAACTGGTAGGAAATTTTGACTGAGAGAATTATCCGCACCGAAGGGAAGGCAGAAA
JMFS018F07+           AGCGAAACTGGTAGGAAATTTTGACTGAGAGAATTATCCGCAACGAAGGGAAGGCAGAAA
                      ____________________________________________________________
consensus             AGCGAAACTGGTAGGAAATTTTGACTGAGAGAATTATCCGCACCGAAGGGAAGGCAGAAA
 
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JMFS133B12+           TCATCGAAGGAGAAGTCGAAGGGGAAGTCGAAGTCGTCCATCACCACGTCGTCGTTTTGG
JMFS076E06+           TCATCGAAGGAGAAGTCGAAGGGGAAGTCGAAGTCGTCCATCACCACGTCGTCGTTTTGG
JMFS018F07+           TCATCGAAGGAAAAGTCGAAGGGGAAGTCGAAGTCGTCCATCACCACGTCGTCGTTTTGG
                      ____________________________________________________________
consensus             TCATCGAAGGAGAAGTCGAAGGGGAAGTCGAAGTCGTCCATCACCACGTCGTCGTTTTGG
 
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JMFS133B12+           AACATGTGTGCGGCTTCCAGAGGTGAAATTGGGAGGACGTCCTCCAATCCATCGGCAGCG
JMFS076E06+           AACATGTGTGCGGCTTCCAGAGGTGAAATTGGGAGGACGTCCTCCAATCCATCGGCAGCG
JMFS018F07+           AACATGTGTGCGGCTTCCAGAGGTGAAATTGGGAGGACGTCCTCCAATCCATCGGCAGCG
                      ____________________________________________________________
consensus             AACATGTGTGCGGCTTCCAGAGGTGAAATTGGGAGGACGTCCTCCAATCCATCGGCAGCG
 
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JMFS133B12+           CCAGTGGCGGTGGTGAGGTTGAGATTTGATGGCGGCGTCGGTGGCTCCGCCACCGCTGTT
JMFS076E06+           CCAGTGGCGGTGGTGAGGTTGAGATTTGATGGCGGCGTCGGTGGCTCCGCCACCGCTGTT
JMFS018F07+           CCAGTGGCGGTGGTGAGGTTGAGATTTGATGGCGGCGTCGGTGGCTCCGCCACCGCTGTT
                      ____________________________________________________________
consensus             CCAGTGGCGGTGGTGAGGTTGAGATTTGATGGCGGCGTCGGTGGCTCCGCCACCGCTGTT
 
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JMFS133B12+           TTGGCCATGGTTTGTAGGTTTCCGACAATGGATCACAGAGAGAGAGAGAGAGA       
JMFS076E06+           TTGGCCATGGTTTGTAGGTTTCCGACAATGGATCACAGAGAGAGAGAGAGAGA       
JMFS018F07+           TTGGCCATGGTTTGTAGGTTTCCGACAATGGATCACAGAGAGAGAGAGAGAGAGATATTG
                      ____________________________________________________________
consensus             TTGGCCATGGTTTGTAGGTTTCCGACAATGGATCACAGAGAGAGAGAGAGAGAGATATTG