Contig 006191:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS016C08Sequence618006191 (7)ref|XP_009773352.1|6e-41PREDICTED: 60S ribosomal protein L2, mitochondrial [Nicotiana sylvestris]
JMFS019H08Sequence547006191 (7)ref|XP_009773352.1|7e-28PREDICTED: 60S ribosomal protein L2, mitochondrial [Nicotiana sylvestris]
JMSF011D01Sequence367006191 (7)730006191 (7)emb|CDP03464.1|1e-65unnamed protein product [Coffea canephora]
JMSF011H18Sequence440003532 (4)738006191 (7)ref|XP_009773352.1|5e-71PREDICTED: 60S ribosomal protein L2, mitochondrial [Nicotiana sylvestris]
JMSF030J09Sequence624006191 (7)ref|XP_009773352.1|4e-50PREDICTED: 60S ribosomal protein L2, mitochondrial [Nicotiana sylvestris]692006191 (7)ref|XP_006359959.1|2e-65PREDICTED: 60S ribosomal protein L2, mitochondrial-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF011D01- ATCAGATCATGGTATCTGGTAAATCTTGCATTTATGAAAATGTACAAAA
rJMSF030J09- TGTACAAAA
                      ____________________________________________________________
consensus ATCAGATCATGGTATCTGGTAAATCTTGCATTTATGAAAATGTACAAAA
 
. : . : . : . : . : . :
rJMSF011D01- TTTAGAACCAGGAATTCGAAAGAACTAAAAAAGACAGGAGTTTTTGAATGCCATAAACTG
rJMSF030J09- TTTAGAACCAGGAATTCGAAAGAACTAAAAAAGACAGGAGTTTTTGAATGCCATAAACTG
                      ____________________________________________________________
consensus TTTAGAACCAGGAATTCGAAAGAACTAAAAAAGACAGGAGTTTTTGAATGCCATAAACTG
 
. : . : . : . : . : . :
rJMSF011D01- AATAACACAGTAGCAATCAAGAAAGAACCTGCAATTTCAATAGATAACCAAATCAAACTC
rJMSF030J09- AATAACACAGTAGCAATCAAGAAAGAACCTGCAATTTCAATAGATAACCAAATCAAACTC
rJMSF011H18- ACTC
                      ____________________________________________________________
consensus AATAACACAGTAGCAATCAAGAAAGAACCTGCAATTTCAATAGATAACCAAATCAAACTC
 
. : . : . : . : . : . :
rJMSF011D01- TCAGTTCTATGCTAAGTTATAATAATATATTAATATCCGTTTCTATTATTCAGTAGAAAC
rJMSF030J09- TCAGTTCTATGCTAAGTTATAATAATATATTAATATCCGTTTCTATTATTCAGTAGAAAC
rJMSF011H18- TCAGTTCTATGCTAAGTTATAATAATATATTAATATCCGTTTCTATTATTCAGTAGAAAC
                      ____________________________________________________________
consensus TCAGTTCTATGCTAAGTTATAATAATATATTAATATCCGTTTCTATTATTCAGTAGAAAC
 
. : . : . : . : . : . :
rJMSF011D01- AAGAATCACTTCTTCCTCTTAAGTGGGCCGGTTTTGTAGCCACACTTGGTGGGCTTACCC
rJMSF030J09- AAGAATCACTTCTTCCTCTTAAGTGGGCCGGTTTTGTAGCCACACTTGGTGGGCTTACCC
rJMSF011H18- AAGAATCACTTCTTCCTCTTAAGTGGGCCGGTTTTGTAGCCACACTTGGTGGGCTTACCC
                      ____________________________________________________________
consensus AAGAATCACTTCTTCCTCTTAAGTGGGCCGGTTTTGTAGCCACACTTGGTGGGCTTACCC
 
. : . : . : . : . : . :
rJMSF011D01- CATGGGGTACGAGAACCCTTCCCATGGCTACCACTACTCTTGCTCTTCCCTTCCCCACCA
rJMSF030J09- CATGGGGTACAAGAACCCTTCCCATGGCTACCACTACTCTTGCTCTTCCCTTCCCCACCA
rJMSF011H18- CATGGGGTACGAGAACCCTTCCCATGGCTACCACTACTCTTGCTCTTCCCTTCCCCACCA
                      ____________________________________________________________
consensus CATGGGGTACGAGAACCCTTCCCATGGCTACCACTACTCTTGCTCTTCCCTTCCCCACCA
 
. : . : . : . : . : . :
rJMSF011D01- CCGTGCGGATGATCAACAGGGTTCATCGCCACACCACGAACTGTCGGCCTAATACCGCGC
rJMSF030J09- CCGTGCGGATGATCAACAGGGTTCATCGCCACACCACGAACTGTCGGCCTAATACCGCGC
rJMSF011H18- CCGTGCGGATGATCAACAGGGTTCATCGCCACACCACGAACTGTCGGCCTAATACCGCGC
JMSF030J09+ ATACCGCGC
                      ____________________________________________________________
consensus CCGTGCGGATGATCAACAGGGTTCATCGCCACACCACGAACTGTCGGCCTAATACCGCGC
 
. : . : . : . : . : . :
rJMSF011D01- CACCGGTTCTGCCCAGCCTTATACAGTTTCTTCGAAGCGTGCTCAGCGTTTGGCGCCTGT
rJMSF030J09- CACCGGTTCTGCCCAGCCTTATACAGTTTCTTCGAAGCGTGCTCAGCGTTTGGCGCCTGT
rJMSF011H18- CACCGGTTCTGCCCAGCCTTATACAGTTTCTTCGAAGCGTGCTCAGCGTTTGGCGCCTGT
JMSF030J09+ CACCGGTTCTGCCCAGCCTTATACAGTTTCTTCGAAGCGTGCTCAGCGTTTGGCGCCTGT
JMFS016C08+ TCAGCGTTTGGCGCCTGT
                      ____________________________________________________________
consensus CACCGGTTCTGCCCAGCCTTATACAGTTTCTTCGAAGCGTGCTCAGCGTTTGGCGCCTGT
 
. : . : . : . : . : . :
rJMSF011D01- CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
rJMSF030J09- CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
rJMSF011H18- CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
JMSF030J09+ CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
JMFS019H08+ GAGCTTGATC
JMFS016C08+ CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
                      ____________________________________________________________
consensus CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
 
. : . : . : . : . : . :
rJMSF011D01- TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
rJMSF030J09- TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
rJMSF011H18- TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
JMSF030J09+ TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
JMFS019H08+ TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
JMFS016C08+ TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
                      ____________________________________________________________
consensus TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
 
. : . : . : . : . : . :
rJMSF011D01- CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
rJMSF030J09- CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
rJMSF011H18- CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
JMSF030J09+ CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
JMFS019H08+ CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
JMFS016C08+ CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
                      ____________________________________________________________
consensus CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
 
. : . : . : . : . : . :
rJMSF011D01- CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
rJMSF030J09- CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
rJMSF011H18- CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
JMSF030J09+ CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
JMSF011D01+ ATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
JMFS019H08+ CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
JMFS016C08+ CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
                      ____________________________________________________________
consensus CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
 
. : . : . : . : . : . :
rJMSF011D01- GGGTTCAATGAGAGCGTCGAA
rJMSF030J09- GGGTTCAATGAGAGCGTCGAAGA
rJMSF011H18- GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
JMSF030J09+ GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
JMSF011D01+ GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
JMFS019H08+ GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
JMFS016C08+ GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
                      ____________________________________________________________
consensus GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
 
. : . : . : . : . : . :
rJMSF011H18- TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGC
JMSF030J09+ TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGC
JMSF011D01+ TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGC
JMFS019H08+ TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGCAAGAGG
JMFS016C08+ TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGCAAGAGG
                      ____________________________________________________________
consensus TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGCAAGAGG
 
. : . : . : . : . : . :
JMFS019H08+ TAAGCAGGGAAGCTGATGACGGAACATTGTAGGAAAGGACAAGATCTCAGTTAGAGCATT
JMFS016C08+ TAAGCAGGGAAGCTGATGACGGAACATTGTAGGAAAGGACAAGATCTCAGTTAGAGCATT
                      ____________________________________________________________
consensus TAAGCAGGGAAGCTGATGACGGAACATTGTAGGAAAGGACAAGATCTCAGTTAGAGCATT
 
. : . : . : . : . : . :
JMFS019H08+ CAAAGTAAATACAATAAATATACATATAATTATCGGAAACAATGGCAATAATCAATAGGT
JMFS016C08+ CAAAGTAAATACAATAAATATACATATAATTATCGGAAACAATGGCAATAATCAATAGGT
                      ____________________________________________________________
consensus CAAAGTAAATACAATAAATATACATATAATTATCGGAAACAATGGCAATAATCAATAGGT
 
. : . : . : . : . : . :
JMFS019H08+ TTCTGTGTGCTTCACTCTCGATTAATCACTTTTTTTTCTTGATAAATGGGAAGGAGGGAA
JMFS016C08+ TTCTGTGTGCTTCACTCTCGATTAATCACTTTTTTTTCTTGATAAATGGGAAGGAGGGAA
                      ____________________________________________________________
consensus TTCTGTGTGCTTCACTCTCGATTAATCACTTTTTTTTCTTGATAAATGGGAAGGAGGGAA
 
. : . : . : . : . : . :
JMFS019H08+ GAAGGGTTT-AAGAAGTGGGTTTTTTGGTTGTTCGTCGATGTCTGGTTTT
JMFS016C08+ GAAGGGTTTGAAGAAGTGGGTTTTTTGGTTGTTCGTCGATGTCTGGTTTTGAGGGTTCGG
                      ____________________________________________________________
consensus GAAGGGTTTGAAGAAGTGGGTTTTTTGGTTGTTCGTCGATGTCTGGTTTTGAGGGTTCGG