| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS016C08 | Sequence | 618 | 006191 (7) | ref|XP_009773352.1| | 6e-41 | PREDICTED: 60S ribosomal protein L2, mitochondrial [Nicotiana sylvestris] | |||||
| JMFS019H08 | Sequence | 547 | 006191 (7) | ref|XP_009773352.1| | 7e-28 | PREDICTED: 60S ribosomal protein L2, mitochondrial [Nicotiana sylvestris] | |||||
| JMSF011D01 | Sequence | 367 | 006191 (7) | 730 | 006191 (7) | emb|CDP03464.1| | 1e-65 | unnamed protein product [Coffea canephora] | |||
| JMSF011H18 | Sequence | 440 | 003532 (4) | 738 | 006191 (7) | ref|XP_009773352.1| | 5e-71 | PREDICTED: 60S ribosomal protein L2, mitochondrial [Nicotiana sylvestris] | |||
| JMSF030J09 | Sequence | 624 | 006191 (7) | ref|XP_009773352.1| | 4e-50 | PREDICTED: 60S ribosomal protein L2, mitochondrial [Nicotiana sylvestris] | 692 | 006191 (7) | ref|XP_006359959.1| | 2e-65 | PREDICTED: 60S ribosomal protein L2, mitochondrial-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF011D01- ATCAGATCATGGTATCTGGTAAATCTTGCATTTATGAAAATGTACAAAA
rJMSF030J09- TGTACAAAA
____________________________________________________________
consensus ATCAGATCATGGTATCTGGTAAATCTTGCATTTATGAAAATGTACAAAA
. : . : . : . : . : . :
rJMSF011D01- TTTAGAACCAGGAATTCGAAAGAACTAAAAAAGACAGGAGTTTTTGAATGCCATAAACTG
rJMSF030J09- TTTAGAACCAGGAATTCGAAAGAACTAAAAAAGACAGGAGTTTTTGAATGCCATAAACTG
____________________________________________________________
consensus TTTAGAACCAGGAATTCGAAAGAACTAAAAAAGACAGGAGTTTTTGAATGCCATAAACTG
. : . : . : . : . : . :
rJMSF011D01- AATAACACAGTAGCAATCAAGAAAGAACCTGCAATTTCAATAGATAACCAAATCAAACTC
rJMSF030J09- AATAACACAGTAGCAATCAAGAAAGAACCTGCAATTTCAATAGATAACCAAATCAAACTC
rJMSF011H18- ACTC
____________________________________________________________
consensus AATAACACAGTAGCAATCAAGAAAGAACCTGCAATTTCAATAGATAACCAAATCAAACTC
. : . : . : . : . : . :
rJMSF011D01- TCAGTTCTATGCTAAGTTATAATAATATATTAATATCCGTTTCTATTATTCAGTAGAAAC
rJMSF030J09- TCAGTTCTATGCTAAGTTATAATAATATATTAATATCCGTTTCTATTATTCAGTAGAAAC
rJMSF011H18- TCAGTTCTATGCTAAGTTATAATAATATATTAATATCCGTTTCTATTATTCAGTAGAAAC
____________________________________________________________
consensus TCAGTTCTATGCTAAGTTATAATAATATATTAATATCCGTTTCTATTATTCAGTAGAAAC
. : . : . : . : . : . :
rJMSF011D01- AAGAATCACTTCTTCCTCTTAAGTGGGCCGGTTTTGTAGCCACACTTGGTGGGCTTACCC
rJMSF030J09- AAGAATCACTTCTTCCTCTTAAGTGGGCCGGTTTTGTAGCCACACTTGGTGGGCTTACCC
rJMSF011H18- AAGAATCACTTCTTCCTCTTAAGTGGGCCGGTTTTGTAGCCACACTTGGTGGGCTTACCC
____________________________________________________________
consensus AAGAATCACTTCTTCCTCTTAAGTGGGCCGGTTTTGTAGCCACACTTGGTGGGCTTACCC
. : . : . : . : . : . :
rJMSF011D01- CATGGGGTACGAGAACCCTTCCCATGGCTACCACTACTCTTGCTCTTCCCTTCCCCACCA
rJMSF030J09- CATGGGGTACAAGAACCCTTCCCATGGCTACCACTACTCTTGCTCTTCCCTTCCCCACCA
rJMSF011H18- CATGGGGTACGAGAACCCTTCCCATGGCTACCACTACTCTTGCTCTTCCCTTCCCCACCA
____________________________________________________________
consensus CATGGGGTACGAGAACCCTTCCCATGGCTACCACTACTCTTGCTCTTCCCTTCCCCACCA
. : . : . : . : . : . :
rJMSF011D01- CCGTGCGGATGATCAACAGGGTTCATCGCCACACCACGAACTGTCGGCCTAATACCGCGC
rJMSF030J09- CCGTGCGGATGATCAACAGGGTTCATCGCCACACCACGAACTGTCGGCCTAATACCGCGC
rJMSF011H18- CCGTGCGGATGATCAACAGGGTTCATCGCCACACCACGAACTGTCGGCCTAATACCGCGC
JMSF030J09+ ATACCGCGC
____________________________________________________________
consensus CCGTGCGGATGATCAACAGGGTTCATCGCCACACCACGAACTGTCGGCCTAATACCGCGC
. : . : . : . : . : . :
rJMSF011D01- CACCGGTTCTGCCCAGCCTTATACAGTTTCTTCGAAGCGTGCTCAGCGTTTGGCGCCTGT
rJMSF030J09- CACCGGTTCTGCCCAGCCTTATACAGTTTCTTCGAAGCGTGCTCAGCGTTTGGCGCCTGT
rJMSF011H18- CACCGGTTCTGCCCAGCCTTATACAGTTTCTTCGAAGCGTGCTCAGCGTTTGGCGCCTGT
JMSF030J09+ CACCGGTTCTGCCCAGCCTTATACAGTTTCTTCGAAGCGTGCTCAGCGTTTGGCGCCTGT
JMFS016C08+ TCAGCGTTTGGCGCCTGT
____________________________________________________________
consensus CACCGGTTCTGCCCAGCCTTATACAGTTTCTTCGAAGCGTGCTCAGCGTTTGGCGCCTGT
. : . : . : . : . : . :
rJMSF011D01- CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
rJMSF030J09- CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
rJMSF011H18- CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
JMSF030J09+ CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
JMFS019H08+ GAGCTTGATC
JMFS016C08+ CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
____________________________________________________________
consensus CCGATTGTGGCCCAACACCGAACATCGATCAACTTCTTCACGCCGGAGGGGAGCTTGATC
. : . : . : . : . : . :
rJMSF011D01- TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
rJMSF030J09- TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
rJMSF011H18- TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
JMSF030J09+ TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
JMFS019H08+ TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
JMFS016C08+ TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
____________________________________________________________
consensus TCGCAGTACTTGGACGTAGAGCTTGGCTCGGTCATGATCTTAGCTACGGTGCCCCATCCC
. : . : . : . : . : . :
rJMSF011D01- CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
rJMSF030J09- CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
rJMSF011H18- CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
JMSF030J09+ CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
JMFS019H08+ CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
JMFS016C08+ CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
____________________________________________________________
consensus CGGACTAGTTTCGGGCCTTGACCGGGCCGCATCTCGAGGTTGTGAATCAGGGTCCCAATC
. : . : . : . : . : . :
rJMSF011D01- CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
rJMSF030J09- CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
rJMSF011H18- CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
JMSF030J09+ CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
JMSF011D01+ ATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
JMFS019H08+ CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
JMFS016C08+ CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
____________________________________________________________
consensus CGCATCTTATTCAGCGGCATGGACGACCCTACTTGGGAGCTGACATCGAGAGTGAACGTC
. : . : . : . : . : . :
rJMSF011D01- GGGTTCAATGAGAGCGTCGAA
rJMSF030J09- GGGTTCAATGAGAGCGTCGAAGA
rJMSF011H18- GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
JMSF030J09+ GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
JMSF011D01+ GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
JMFS019H08+ GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
JMFS016C08+ GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
____________________________________________________________
consensus GGGTTCAATGAGAGCGTCGAAGACGCCGGAGCCGCATTGGAGAAAGAACGAGCGAGGAAT
. : . : . : . : . : . :
rJMSF011H18- TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGC
JMSF030J09+ TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGC
JMSF011D01+ TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGC
JMFS019H08+ TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGCAAGAGG
JMFS016C08+ TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGCAAGAGG
____________________________________________________________
consensus TGACAAATCGAGGACGAAGCCGTTCGAGCTCTGAAGAGCACCATTATTTTAAGCAAGAGG
. : . : . : . : . : . :
JMFS019H08+ TAAGCAGGGAAGCTGATGACGGAACATTGTAGGAAAGGACAAGATCTCAGTTAGAGCATT
JMFS016C08+ TAAGCAGGGAAGCTGATGACGGAACATTGTAGGAAAGGACAAGATCTCAGTTAGAGCATT
____________________________________________________________
consensus TAAGCAGGGAAGCTGATGACGGAACATTGTAGGAAAGGACAAGATCTCAGTTAGAGCATT
. : . : . : . : . : . :
JMFS019H08+ CAAAGTAAATACAATAAATATACATATAATTATCGGAAACAATGGCAATAATCAATAGGT
JMFS016C08+ CAAAGTAAATACAATAAATATACATATAATTATCGGAAACAATGGCAATAATCAATAGGT
____________________________________________________________
consensus CAAAGTAAATACAATAAATATACATATAATTATCGGAAACAATGGCAATAATCAATAGGT
. : . : . : . : . : . :
JMFS019H08+ TTCTGTGTGCTTCACTCTCGATTAATCACTTTTTTTTCTTGATAAATGGGAAGGAGGGAA
JMFS016C08+ TTCTGTGTGCTTCACTCTCGATTAATCACTTTTTTTTCTTGATAAATGGGAAGGAGGGAA
____________________________________________________________
consensus TTCTGTGTGCTTCACTCTCGATTAATCACTTTTTTTTCTTGATAAATGGGAAGGAGGGAA
. : . : . : . : . : . :
JMFS019H08+ GAAGGGTTT-AAGAAGTGGGTTTTTTGGTTGTTCGTCGATGTCTGGTTTT
JMFS016C08+ GAAGGGTTTGAAGAAGTGGGTTTTTTGGTTGTTCGTCGATGTCTGGTTTTGAGGGTTCGG
____________________________________________________________
consensus GAAGGGTTTGAAGAAGTGGGTTTTTTGGTTGTTCGTCGATGTCTGGTTTTGAGGGTTCGG