Contig 006189:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022M17Sequence457006189 (5)ref|XP_006338134.1|4e-06PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Solanum tuberosum]767004318 (3)ref|XP_009761470.1|4e-30PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]
JMFF040E07Sequence426006189 (5)ref|XP_006338134.1|4e-06PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Solanum tuberosum]718004318 (3)ref|XP_009761470.1|3e-18PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]
JMFS014G09Sequence530006189 (5)ref|XP_006338134.1|5e-06PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Solanum tuberosum]
JMFS129H06Sequence623006189 (5)ref|XP_009761470.1|1e-08PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]
JMSF035H16Sequence645006189 (5)ref|XP_009761470.1|1e-25PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]738004318 (3)ref|XP_009761470.1|1e-04PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS129H06+ AAGAGGGTACAGATGACACAGA
                      ____________________________________________________________
consensus AAGAGGGTACAGATGACACAGA
 
. : . : . : . : . : . :
JMFS129H06+ TAATGAAGACTCACTAGAGCCATTAACACTTGATACTGTTGAATTTGATGACTTTGATTT
                      ____________________________________________________________
consensus TAATGAAGACTCACTAGAGCCATTAACACTTGATACTGTTGAATTTGATGACTTTGATTT
 
. : . : . : . : . : . :
JMFS129H06+ TGTATTCTTATCAGCACTGGGATTCACATGACCAGATTTACTTGAAGAGACAACATTTAC
                      ____________________________________________________________
consensus TGTATTCTTATCAGCACTGGGATTCACATGACCAGATTTACTTGAAGAGACAACATTTAC
 
. : . : . : . : . : . :
JMFS129H06+ AGAACTGGGCACTGCAGATTGCTCCAGAAATTGTGGCTTATGATCTGAGTTGGTTGGCCA
                      ____________________________________________________________
consensus AGAACTGGGCACTGCAGATTGCTCCAGAAATTGTGGCTTATGATCTGAGTTGGTTGGCCA
 
. : . : . : . : . : . :
JMFS129H06+ AGTTTTTGTGTGACCAGAACCAGCACCAACAGATTTGTCAAAACCATCTGAATCATCACT
JMSF035H16+ TGAATCATCACT
                      ____________________________________________________________
consensus AGTTTTTGTGTGACCAGAACCAGCACCAACAGATTTGTCAAAACCATCTGAATCATCACT
 
. : . : . : . : . : . :
JMFS129H06+ GATGGATGTGCTGGAAAAGGATTCACTAGAAGTAGTGGAAGTTGAAAATGAATGAGGTGA
JMSF035H16+ GATGGATGTGCTGGAAAAGGATTCACTAGAAGTAGTGGAAGTTGAAAATGAATGAGGTGA
                      ____________________________________________________________
consensus GATGGATGTGCTGGAAAAGGATTCACTAGAAGTAGTGGAAGTTGAAAATGAATGAGGTGA
 
. : . : . : . : . : . :
JMFS129H06+ AAACTCAGAGTCTGAGTTTGTAGTTCCATCATCTGTGAAATGTTTTCCTTCCATAACATC
JMSF035H16+ AAACTCAGAGTCTGAGTTTGTAGTTCCATCATCTGTGAAATGTTTTCCTTCCATAACATC
                      ____________________________________________________________
consensus AAACTCAGAGTCTGAGTTTGTAGTTCCATCATCTGTGAAATGTTTTCCTTCCATAACATC
 
. : . : . : . : . : . :
JMFS129H06+ TTCTGTGTTTTCTGCCCCAGAGATACTGGGTTCAGAACATGTAGGCTCTGCAAAAGATGC
JMSF035H16+ TTCTGTGTTTTCTGCCCCAGAGATACTGGGTTCAGAACATGTAGGCTCTGCAAAAGATGC
                      ____________________________________________________________
consensus TTCTGTGTTTTCTGCCCCAGAGATACTGGGTTCAGAACATGTAGGCTCTGCAAAAGATGC
 
. : . : . : . : . : . :
JMFS129H06+ ATCAATTGATCCAGGAGTGTTCCTCTCTTCAGTCTCAATTCCTTCAGCATAACCTTCATT
JMSF035H16+ ATCAATTGATCCAGGAGTGTTCCTCTCTTCAGTCTCAATTCCTTCAGCATAACCTTCATT
                      ____________________________________________________________
consensus ATCAATTGATCCAGGAGTGTTCCTCTCTTCAGTCTCAATTCCTTCAGCATAACCTTCATT
 
. : . : . : . : . : . :
JMFS129H06+ TGCTTCTTGCCTAAATACCTTAAAATCATTGGCTCCTTTACCATAACTGTCATGATTGTT
JMSF035H16+ TGCTTCTTGCCTAAATACCTTAAAATCATTGGCTCCTTTACCATAACTGTCATGATTGTT
                      ____________________________________________________________
consensus TGCTTCTTGCCTAAATACCTTAAAATCATTGGCTCCTTTACCATAACTGTCATGATTGTT
 
. : . : . : . : . : . :
JMFS129H06+ GTTGACAGGTGGATGGCATTCATCTTTGTGGCCCAGTCTCCAATGGATGATTTGACATTT
JMSF035H16+ GTTGACAGGTGGATGGCATTCATCTTTGTGGCCCAGTCTCCAATGGATGATTTGACATTT
                      ____________________________________________________________
consensus GTTGACAGGTGGATGGCATTCATCTTTGTGGCCCAGTCTCCAATGGATGATTTGACATTT
 
. : . : . : . : . : . :
JMFS129H06+ A
JMSF035H16+ ACCAGAGCAGTATCGAACCGCTTTACACCGGGAGCACCGCGTAGAAGCTGAGGAAAAGCA
                      ____________________________________________________________
consensus ACCAGAGCAGTATCGAACCGCTTTACACCGGGAGCACCGCGTAGAAGCTGAGGAAAAGCA
 
. : . : . : . : . : . :
JMSF035H16+ CTGAGCACATTGATACGGCAGTTGCCGCGCAACTGGCACAGATGTCAAGGTTGAAGATAC
JMFF022M17+ AC
                      ____________________________________________________________
consensus CTGAGCACATTGATACGGCAGTTGCCGCGCAACTGGCACAGATGTCAAGGTTGAAGATAC
 
. : . : . : . : . : . :
JMSF035H16+ CGGAGCAGGCGCCGGAACCGCCGCCGGCACCTCATCCCCCACCACAGAGCCGAAGCTATA
JMFF022M17+ CGGAGCAGGNGCNGGAACCGCCGCCGGCACNTCATCCCCCAACACAGAGCNGAAGCTATA
JMFF040E07+ TCATCCCCCAACACAGAGCCGAAGNTATA
JMFS014G09+ GGAACCGCCGCCGGCACCTCATCCCCCACCACAGAGCCGAAGCTATA
                      ____________________________________________________________
consensus CGGAGCAGGCGCCGGAACCGCCGCCGGCACCTCATCCCCCACCACAGAGCCGAAGCTATA
 
. : . : . : . : . : . :
JMSF035H16+ GCTGCTATACTCAAAGCCGTACTCCGCAGCCGCCTCGAACTCAGCCCTAGCAGCCTCCTA
JMFF022M17+ GNTGNTATACTCAAAGCCGTACTCCGCAGCCGCCTCGAACTCAGCCCTAGCAGCCTCCTC
JMFF040E07+ GCTGCTATACTCAAAGCCGTACTCCGCAGCCGCCTCGAACTCAGCCNTAGCAGCCTCCTC
JMFS014G09+ GCTGCTATACTCAAAGCCGTACTCCGCAGCCGCCTCGAACTCAGCCCTAGCAGCCTCCTC
                      ____________________________________________________________
consensus GCTGCTATACTCAAAGCCGTACTCCGCAGCCGCCTCGAACTCAGCCCTAGCAGCCTCCTC
 
. : . : . : . : . : . :
JMSF035H16+ AGAAGCCAAAACCAAAAGCCGGTCGATCACCTC
JMFF022M17+ AGAAGCCAAAACCAAAAGCCGGTCGATCTCCTCCCTCCTAGCCTCCGCGTGCCGCCATTT
JMFF040E07+ AGAAGCCAAAACCAAAAGCCGGTCGATCTCCTCCCTCCTAGCCTCCGCGTGCCGCCATTT
JMFS014G09+ AGAAGCCAAAACCAAAAGCCGGTCGATCTCCTCCCTCCTAGCCTCCGCGTGCCGCCATTT
                      ____________________________________________________________
consensus AGAAGCCAAAACCAAAAGCCGGTCGATCTCCTCCCTCCTAGCCTCCGCGTGCCGCCATTT
 
. : . : . : . : . : . :
JMFF022M17+ CTGGCGGACCAAAAAGCCCAGCAGTGGCCCTATGAACACCAGGAACGCCGCCACGAGAAC
JMFF040E07+ CTGGCGGACCAAAAAGCCCAGCAGTGGCCCTATGAACACCAGGAACGCCGCCACGAGAAC
JMFS014G09+ CTGGCGGACCAAAAAGCCCAGCAGTGGCCCTATGAACACCAGGAACGCCGCCACGAGAAC
                      ____________________________________________________________
consensus CTGGCGGACCAAAAAGCCCAGCAGTGGCCCTATGAACACCAGGAACGCCGCCACGAGAAC
 
. : . : . : . : . : . :
JMFF022M17+ GCGCAGACCTAGATCCCCTCCCAGAAGCATTTACACAATAGATACACAACAACACTATTT
JMFF040E07+ GCGCAGACCTAGATCCCCTCCCAGAAGCATTTACACAATAGATACACAACAACACTATTT
JMFS014G09+ GCGCAGACCTAGATCCCCTCCCAGAAGCATTTACACAATAGATACACAACAACACTATTT
                      ____________________________________________________________
consensus GCGCAGACCTAGATCCCCTCCCAGAAGCATTTACACAATAGATACACAACAACACTATTT
 
. : . : . : . : . : . :
JMFF022M17+ CTCGATCACATCCAAACCCTCACTACATCCAAACCTCACAGATTACACACCTCCCTCCCC
JMFF040E07+ CTCGATCACATCCAAACCCTCACTACATCCAAACCTCACAGATTACACACCTCCCTCCCC
JMFS014G09+ CTCGATCACATCCAAACCCTCACTACATCCAAACCTCACAGATTACACACCTCCCTCCCC
                      ____________________________________________________________
consensus CTCGATCACATCCAAACCCTCACTACATCCAAACCTCACAGATTACACACCTCCCTCCCC
 
. : . : . : . : . : . :
JMFF022M17+ CATCCAAATAAATTCAACGAAATTCCCCCAGGATATATCGGATTCCAATTGTGAGATCAA
JMFF040E07+ CATCCAAATAAATTCAACGAAATTCCCCCAGGATATATCGGATTCCAATTGTGAGATCAA
JMFS014G09+ CATCCAAATAAATTCAACGAAATTCCCCCAGGATATATCGGATTCCAATTGTGAGATCAA
                      ____________________________________________________________
consensus CATCCAAATAAATTCAACGAAATTCCCCCAGGATATATCGGATTCCAATTGTGAGATCAA
 
. : . : . : . : . : . :
JMFF022M17+ ACCCGCCAACGATTGGCCTTCTCCACCGCAC
JMFF040E07+ ACCCGCCAACGATTGGCCTTCTCCACCGCAC
JMFS014G09+ ACCCGCCAACGATTGGCCTTCTCCACCGCACTGACAGCGATATAAACGAGAAAAATACAA
                      ____________________________________________________________
consensus ACCCGCCAACGATTGGCCTTCTCCACCGCACTGACAGCGATATAAACGAGAAAAATACAA
 
. : . : . : . : . : . :
JMFS014G09+ AACATATAGATTATATATGTACATAAACGCCACAGAGAGACACCGAATAGAGAGAGAAAA
                      ____________________________________________________________
consensus AACATATAGATTATATATGTACATAAACGCCACAGAGAGACACCGAATAGAGAGAGAAAA