Contig 006189:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022M17Sequence457006189 (5)ref|XP_006338134.1|4e-06PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Solanum tuberosum]767004318 (3)ref|XP_009761470.1|4e-30PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]
JMFF040E07Sequence426006189 (5)ref|XP_006338134.1|4e-06PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Solanum tuberosum]718004318 (3)ref|XP_009761470.1|3e-18PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]
JMFS014G09Sequence530006189 (5)ref|XP_006338134.1|5e-06PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Solanum tuberosum]
JMFS129H06Sequence623006189 (5)ref|XP_009761470.1|1e-08PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]
JMSF035H16Sequence645006189 (5)ref|XP_009761470.1|1e-25PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]738004318 (3)ref|XP_009761470.1|1e-04PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS129H06+                                                 AAGAGGGTACAGATGACACAGA
                      ____________________________________________________________
consensus                                                   AAGAGGGTACAGATGACACAGA
 
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JMFS129H06+           TAATGAAGACTCACTAGAGCCATTAACACTTGATACTGTTGAATTTGATGACTTTGATTT
                      ____________________________________________________________
consensus             TAATGAAGACTCACTAGAGCCATTAACACTTGATACTGTTGAATTTGATGACTTTGATTT
 
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JMFS129H06+           TGTATTCTTATCAGCACTGGGATTCACATGACCAGATTTACTTGAAGAGACAACATTTAC
                      ____________________________________________________________
consensus             TGTATTCTTATCAGCACTGGGATTCACATGACCAGATTTACTTGAAGAGACAACATTTAC
 
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JMFS129H06+           AGAACTGGGCACTGCAGATTGCTCCAGAAATTGTGGCTTATGATCTGAGTTGGTTGGCCA
                      ____________________________________________________________
consensus             AGAACTGGGCACTGCAGATTGCTCCAGAAATTGTGGCTTATGATCTGAGTTGGTTGGCCA
 
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JMFS129H06+           AGTTTTTGTGTGACCAGAACCAGCACCAACAGATTTGTCAAAACCATCTGAATCATCACT
JMSF035H16+                                                           TGAATCATCACT
                      ____________________________________________________________
consensus             AGTTTTTGTGTGACCAGAACCAGCACCAACAGATTTGTCAAAACCATCTGAATCATCACT
 
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JMFS129H06+           GATGGATGTGCTGGAAAAGGATTCACTAGAAGTAGTGGAAGTTGAAAATGAATGAGGTGA
JMSF035H16+           GATGGATGTGCTGGAAAAGGATTCACTAGAAGTAGTGGAAGTTGAAAATGAATGAGGTGA
                      ____________________________________________________________
consensus             GATGGATGTGCTGGAAAAGGATTCACTAGAAGTAGTGGAAGTTGAAAATGAATGAGGTGA
 
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JMFS129H06+           AAACTCAGAGTCTGAGTTTGTAGTTCCATCATCTGTGAAATGTTTTCCTTCCATAACATC
JMSF035H16+           AAACTCAGAGTCTGAGTTTGTAGTTCCATCATCTGTGAAATGTTTTCCTTCCATAACATC
                      ____________________________________________________________
consensus             AAACTCAGAGTCTGAGTTTGTAGTTCCATCATCTGTGAAATGTTTTCCTTCCATAACATC
 
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JMFS129H06+           TTCTGTGTTTTCTGCCCCAGAGATACTGGGTTCAGAACATGTAGGCTCTGCAAAAGATGC
JMSF035H16+           TTCTGTGTTTTCTGCCCCAGAGATACTGGGTTCAGAACATGTAGGCTCTGCAAAAGATGC
                      ____________________________________________________________
consensus             TTCTGTGTTTTCTGCCCCAGAGATACTGGGTTCAGAACATGTAGGCTCTGCAAAAGATGC
 
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JMFS129H06+           ATCAATTGATCCAGGAGTGTTCCTCTCTTCAGTCTCAATTCCTTCAGCATAACCTTCATT
JMSF035H16+           ATCAATTGATCCAGGAGTGTTCCTCTCTTCAGTCTCAATTCCTTCAGCATAACCTTCATT
                      ____________________________________________________________
consensus             ATCAATTGATCCAGGAGTGTTCCTCTCTTCAGTCTCAATTCCTTCAGCATAACCTTCATT
 
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JMFS129H06+           TGCTTCTTGCCTAAATACCTTAAAATCATTGGCTCCTTTACCATAACTGTCATGATTGTT
JMSF035H16+           TGCTTCTTGCCTAAATACCTTAAAATCATTGGCTCCTTTACCATAACTGTCATGATTGTT
                      ____________________________________________________________
consensus             TGCTTCTTGCCTAAATACCTTAAAATCATTGGCTCCTTTACCATAACTGTCATGATTGTT
 
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JMFS129H06+           GTTGACAGGTGGATGGCATTCATCTTTGTGGCCCAGTCTCCAATGGATGATTTGACATTT
JMSF035H16+           GTTGACAGGTGGATGGCATTCATCTTTGTGGCCCAGTCTCCAATGGATGATTTGACATTT
                      ____________________________________________________________
consensus             GTTGACAGGTGGATGGCATTCATCTTTGTGGCCCAGTCTCCAATGGATGATTTGACATTT
 
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JMFS129H06+           A                                                           
JMSF035H16+           ACCAGAGCAGTATCGAACCGCTTTACACCGGGAGCACCGCGTAGAAGCTGAGGAAAAGCA
                      ____________________________________________________________
consensus             ACCAGAGCAGTATCGAACCGCTTTACACCGGGAGCACCGCGTAGAAGCTGAGGAAAAGCA
 
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JMSF035H16+           CTGAGCACATTGATACGGCAGTTGCCGCGCAACTGGCACAGATGTCAAGGTTGAAGATAC
JMFF022M17+                                                                     AC
                      ____________________________________________________________
consensus             CTGAGCACATTGATACGGCAGTTGCCGCGCAACTGGCACAGATGTCAAGGTTGAAGATAC
 
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JMSF035H16+           CGGAGCAGGCGCCGGAACCGCCGCCGGCACCTCATCCCCCACCACAGAGCCGAAGCTATA
JMFF022M17+           CGGAGCAGGNGCNGGAACCGCCGCCGGCACNTCATCCCCCAACACAGAGCNGAAGCTATA
JMFF040E07+                                          TCATCCCCCAACACAGAGCCGAAGNTATA
JMFS014G09+                        GGAACCGCCGCCGGCACCTCATCCCCCACCACAGAGCCGAAGCTATA
                      ____________________________________________________________
consensus             CGGAGCAGGCGCCGGAACCGCCGCCGGCACCTCATCCCCCACCACAGAGCCGAAGCTATA
 
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JMSF035H16+           GCTGCTATACTCAAAGCCGTACTCCGCAGCCGCCTCGAACTCAGCCCTAGCAGCCTCCTA
JMFF022M17+           GNTGNTATACTCAAAGCCGTACTCCGCAGCCGCCTCGAACTCAGCCCTAGCAGCCTCCTC
JMFF040E07+           GCTGCTATACTCAAAGCCGTACTCCGCAGCCGCCTCGAACTCAGCCNTAGCAGCCTCCTC
JMFS014G09+           GCTGCTATACTCAAAGCCGTACTCCGCAGCCGCCTCGAACTCAGCCCTAGCAGCCTCCTC
                      ____________________________________________________________
consensus             GCTGCTATACTCAAAGCCGTACTCCGCAGCCGCCTCGAACTCAGCCCTAGCAGCCTCCTC
 
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JMSF035H16+           AGAAGCCAAAACCAAAAGCCGGTCGATCACCTC                           
JMFF022M17+           AGAAGCCAAAACCAAAAGCCGGTCGATCTCCTCCCTCCTAGCCTCCGCGTGCCGCCATTT
JMFF040E07+           AGAAGCCAAAACCAAAAGCCGGTCGATCTCCTCCCTCCTAGCCTCCGCGTGCCGCCATTT
JMFS014G09+           AGAAGCCAAAACCAAAAGCCGGTCGATCTCCTCCCTCCTAGCCTCCGCGTGCCGCCATTT
                      ____________________________________________________________
consensus             AGAAGCCAAAACCAAAAGCCGGTCGATCTCCTCCCTCCTAGCCTCCGCGTGCCGCCATTT
 
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JMFF022M17+           CTGGCGGACCAAAAAGCCCAGCAGTGGCCCTATGAACACCAGGAACGCCGCCACGAGAAC
JMFF040E07+           CTGGCGGACCAAAAAGCCCAGCAGTGGCCCTATGAACACCAGGAACGCCGCCACGAGAAC
JMFS014G09+           CTGGCGGACCAAAAAGCCCAGCAGTGGCCCTATGAACACCAGGAACGCCGCCACGAGAAC
                      ____________________________________________________________
consensus             CTGGCGGACCAAAAAGCCCAGCAGTGGCCCTATGAACACCAGGAACGCCGCCACGAGAAC
 
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JMFF022M17+           GCGCAGACCTAGATCCCCTCCCAGAAGCATTTACACAATAGATACACAACAACACTATTT
JMFF040E07+           GCGCAGACCTAGATCCCCTCCCAGAAGCATTTACACAATAGATACACAACAACACTATTT
JMFS014G09+           GCGCAGACCTAGATCCCCTCCCAGAAGCATTTACACAATAGATACACAACAACACTATTT
                      ____________________________________________________________
consensus             GCGCAGACCTAGATCCCCTCCCAGAAGCATTTACACAATAGATACACAACAACACTATTT
 
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JMFF022M17+           CTCGATCACATCCAAACCCTCACTACATCCAAACCTCACAGATTACACACCTCCCTCCCC
JMFF040E07+           CTCGATCACATCCAAACCCTCACTACATCCAAACCTCACAGATTACACACCTCCCTCCCC
JMFS014G09+           CTCGATCACATCCAAACCCTCACTACATCCAAACCTCACAGATTACACACCTCCCTCCCC
                      ____________________________________________________________
consensus             CTCGATCACATCCAAACCCTCACTACATCCAAACCTCACAGATTACACACCTCCCTCCCC
 
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JMFF022M17+           CATCCAAATAAATTCAACGAAATTCCCCCAGGATATATCGGATTCCAATTGTGAGATCAA
JMFF040E07+           CATCCAAATAAATTCAACGAAATTCCCCCAGGATATATCGGATTCCAATTGTGAGATCAA
JMFS014G09+           CATCCAAATAAATTCAACGAAATTCCCCCAGGATATATCGGATTCCAATTGTGAGATCAA
                      ____________________________________________________________
consensus             CATCCAAATAAATTCAACGAAATTCCCCCAGGATATATCGGATTCCAATTGTGAGATCAA
 
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JMFF022M17+           ACCCGCCAACGATTGGCCTTCTCCACCGCAC                             
JMFF040E07+           ACCCGCCAACGATTGGCCTTCTCCACCGCAC                             
JMFS014G09+           ACCCGCCAACGATTGGCCTTCTCCACCGCACTGACAGCGATATAAACGAGAAAAATACAA
                      ____________________________________________________________
consensus             ACCCGCCAACGATTGGCCTTCTCCACCGCACTGACAGCGATATAAACGAGAAAAATACAA
 
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JMFS014G09+           AACATATAGATTATATATGTACATAAACGCCACAGAGAGACACCGAATAGAGAGAGAAAA
                      ____________________________________________________________
consensus             AACATATAGATTATATATGTACATAAACGCCACAGAGAGACACCGAATAGAGAGAGAAAA