Contig 006184:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003B18Sequence625006184 (5)ref|XP_006439752.1|2e-57hypothetical protein CICLE_v10022413mg [Citrus clementina] ref|XP_006476731.1| P
JMFN025N19Sequence579006184 (5)ref|XP_009590601.1|2e-48PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis]
JMFS007H03Sequence486006184 (5)ref|XP_008452650.1|2e-06PREDICTED: pollen-specific protein SF3-like isoform X2 [Cucumis melo]
JMSF033P19Sequence712003567 (5)753006184 (5)ref|XP_006439752.1|3e-57hypothetical protein CICLE_v10022413mg [Citrus clementina] ref|XP_006476731.1| P
JMSF044M19Sequence786003567 (5)581006184 (5)ref|XP_009590601.1|8e-50PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFN025N19+                                            AAAAACATCACATAAAAATTTTCTGGC
                      ____________________________________________________________
consensus                                              AAAAACATCACATAAAAATTTTCTGGC
 
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JMFN025N19+           ACACATAAGGGCAAAAACAGCAATGCCCATATGAAATGATTTTAAGACAAGACTCAAAAA
                      ____________________________________________________________
consensus             ACACATAAGGGCAAAAACAGCAATGCCCATATGAAATGATTTTAAGACAAGACTCAAAAA
 
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JMFN025N19+           AGCACTGTCAAGAATTGATTCAGCTACAAAATGGAATTCTTACAGAAAAACTCTCAAGTG
rJMSF044M19-                 TCAAGAATTGATTCAGCTACAAAATGGAATTCTTACAGAAAAACTCTCAAGTG
rJMSF033P19-                GTCAAGAATTGATTCAGCTACAAAATGGAATTCTTACAGAAAAACTCTCAAGTG
                      ____________________________________________________________
consensus             AGCACTGTCAAGAATTGATTCAGCTACAAAATGGAATTCTTACAGAAAAACTCTCAAGTG
 
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JMFN025N19+           TTACCACTTGAAAATGCATTGAGGAATGCTGACATGTATGTTTAGACTTCATCATGGAGA
rJMSF044M19-          TTACCACTTGAAAATGCATTGAGGAATGCTGACATGTATGTTTAGACTTCATCATGGAGA
rJMSF033P19-          TTACCACTTGAAAATGCATTGAGGAATGCTGACATGTATGTTTAGACTTCATCATGGAGA
                      ____________________________________________________________
consensus             TTACCACTTGAAAATGCATTGAGGAATGCTGACATGTATGTTTAGACTTCATCATGGAGA
 
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JMFN025N19+           AACTAATCTCAAACCATGATCGGAAGGAACATATATAAACATTAAGCGATCAGATCAGGC
rJMSF044M19-          AACTAATCTCAAACCATGATCGGAAGGAACATATATAAACATTAAGCGATCAGATCAGGC
JMFN003B18+                   TCAAACCATGATCGGAAGGAACATATATAAACATTAAGCGATCAGATCAGGC
rJMSF033P19-          AACTAATCTCAAACCATGATCGGAAGGAACATATATAAACATTAAGCGATCAGATCAGGC
                      ____________________________________________________________
consensus             AACTAATCTCAAACCATGATCGGAAGGAACATATATAAACATTAAGCGATCAGATCAGGC
 
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JMFN025N19+           CGTGCCATTCTCAGTCACCGGCACCTCCTTAGATTTCTCGCTCGTATCCAACTGGCTGAA
rJMSF044M19-          CGTGCCATTCTCAGTCACCGGCACCTCCTTAGATTTCTCGCTCGTATCCAACTGGCTGAA
JMFN003B18+           CGTGCCATTCTCAGTCACCGGCACCTCCTTAGATTTCTCGCTCGTATCCAACTGGCTGAA
rJMSF033P19-          CGTGCCATTCTCAGTCACCGGCACCTCCTTAGATTTCTCGCTCGTATCCAACTGGCTGAA
                      ____________________________________________________________
consensus             CGTGCCATTCTCAGTCACCGGCACCTCCTTAGATTTCTCGCTCGTATCCAACTGGCTGAA
 
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JMFN025N19+           GTTCCCCTTTTCCTTGAACTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGC
rJMSF044M19-          GTTCCCCTTTTCCTTGAACTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGC
JMFN003B18+           GTTCCCCTTTTCCTTGAACTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGC
rJMSF033P19-          GTTCCCCTTTTCCTTGAACTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGC
                      ____________________________________________________________
consensus             GTTCCCCTTTTCCTTGAACTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN025N19+           TACATAATTTGATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTG
rJMSF044M19-          TACATAATTTGATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTG
JMFN003B18+           TACATAATTTGATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTG
rJMSF033P19-          TACATAATTTGATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTG
                      ____________________________________________________________
consensus             TACATAATTTGATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTG
 
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JMFN025N19+           GTACGATGTTCCATCAACTGCTACCTTTTCAATGGGGTAAACAGTTTTCTTGCAAGCAAC
rJMSF044M19-          GTACGATGTTCCATCAACTGCTACCTTTTCAATGGGGTAAACAGTTTTCTTGCAAGCAAC
JMFN003B18+           GTACGATGTTCCATCAACTGCTACCTTTTCAATGGGGTAAACAGTTTTCTTGCAAGCAAC
rJMSF033P19-          GTACGATGTTCCATCAACTGCTACCTTTTCAATGGGGTAAACAGTTTTCTTGCAAGCAAC
                      ____________________________________________________________
consensus             GTACGATGTTCCATCAACTGCTACCTTTTCAATGGGGTAAACAGTTTTCTTGCAAGCAAC
 
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JMFN025N19+           GCATTTATCTTGAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTCCCCTGATCT
rJMSF044M19-          GCATTTATCTTGAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTCCCCTGATCT
JMFN003B18+           GCATTTATCTTGAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTCCCCTGATCT
rJMSF033P19-          GCATTTATCTTGAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTCCCCTGATCT
                      ____________________________________________________________
consensus             GCATTTATCTTGAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTCCCCTGATCT
 
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JMFN025N19+           GCAGCTCTTTCC                                                
rJMSF044M19-          GCAGCTCTTTCCCTCACCGTTTTTGGAGCCCC                            
JMFN003B18+           GCAGCTCTTTCCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTC
rJMSF033P19-          GCAGCTCTTTCCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTC
JMFS007H03+                                                                 CCAGTC
                      ____________________________________________________________
consensus             GCAGCTCTTTCCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTC
 
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JMFN003B18+           ATTTTGAAAAGTTGATCAAAGTGTGGTTTGCATTATAAAACTCCTTCGAAGGAGTTGTAA
rJMSF033P19-          ATTTTGAAAAGTTGATCAAAGTGTGGTTTGCATTATAAAACTCCTTCGAAGGAGTTGTAA
JMFS007H03+           ACTTTGAAAAGTTGATCAAAGTGTGGTTTGCAATATAAAACTCCTTCGAAGGAGTTGTAA
                      ____________________________________________________________
consensus             ATTTTGAAAAGTTGATCAAAGTGTGGTTTGCATTATAAAACTCCTTCGAAGGAGTTGTAA
 
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JMFN003B18+           TTGCTGAGC                                                   
rJMSF033P19-          TTGCTGAGCGGGTAGCAGAAGTGGACTCCTCGCGGTGGTTCAAGTTCAATTCGTCGCCGG
JMFS007H03+           TTGCTGAGCTGGTAGCAGAAGTGGACTCCTCGCGGTGGTTCAAGTTCAATTCGTCGCCAG
                      ____________________________________________________________
consensus             TTGCTGAGCTGGTAGCAGAAGTGGACTCCTCGCGGTGGTTCAAGTTCAATTCGTCGCCGG
 
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rJMSF033P19-          GAGCCGACACGCTCGTCGCCGGAAGGGCTCCTTCATCTTCGCGGTTCA            
JMFS007H03+           GAGCCGACACGCTCGTCGCCGGAAGGGCTCCTTCATCTTCGCGGTTCAAGTTCTGAACAA
                      ____________________________________________________________
consensus             GAGCCGACACGCTCGTCGCCGGAAGGGCTCCTTCATCTTCGCGGTTCAAGTTCTGAACAA
 
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JMFS007H03+           TTACCTGGATTCGTCGCCGGAAGGGCTCCTTCATCTGCACGGCCAGATTATACATATGCC
                      ____________________________________________________________
consensus             TTACCTGGATTCGTCGCCGGAAGGGCTCCTTCATCTGCACGGCCAGATTATACATATGCC
 
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JMFS007H03+           ATTCTGAATCACCTCTCAGTTAGGGTTTTCGACTGCTTCCTCAAATCGATGGTGCGATTT
                      ____________________________________________________________
consensus             ATTCTGAATCACCTCTCAGTTAGGGTTTTCGACTGCTTCCTCAAATCGATGGTGCGATTT
 
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JMFS007H03+           ATGTCAATAGGGAATTTTATGAACTGAAGACGATGATCACTACTACAAAATTCCAGATCC
                      ____________________________________________________________
consensus             ATGTCAATAGGGAATTTTATGAACTGAAGACGATGATCACTACTACAAAATTCCAGATCC
 
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JMFS007H03+           GAGCCCTTAATCCACAGAAATTACGAACAACGAAGTACGAAACCTAGACTTGGTTCATGG
                      ____________________________________________________________
consensus             GAGCCCTTAATCCACAGAAATTACGAACAACGAAGTACGAAACCTAGACTTGGTTCATGG
 
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JMFS007H03+           CAGATTGGAAGACGGAGATATGGAGAATCGGGACTGAGGCGAGAGAGAATCGGTGAGCGG
                      ____________________________________________________________
consensus             CAGATTGGAAGACGGAGATATGGAGAATCGGGACTGAGGCGAGAGAGAATCGGTGAGCGG