Contig 006179:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS001F05Sequence609006179 (3)ref|XP_009601080.1|4e-27PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Nic
JMFS015B01Sequence584006179 (3)ref|XP_009601080.1|9e-25PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Nic
JMSF050E15Sequence715006179 (3)ref|XP_009601080.1|2e-45PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Nic783017278ref|XP_011079779.1|7e-44PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Ses

Alignment

This contig is upended


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JMSF050E15+                           AAGGGGAGTTGTTGTCGAGAGACTGATTNCAAGCGGAGACGACG
                      ____________________________________________________________
consensus                             AAGGGGAGTTGTTGTCGAGAGACTGATTNCAAGCGGAGACGACG
 
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JMSF050E15+           CTGGAGAGGGCGGCGGCGGAGACGTTGGACTCGAATTCGGGTCGGGTCGTGATGTTCATG
                      ____________________________________________________________
consensus             CTGGAGAGGGCGGCGGCGGAGACGTTGGACTCGAATTCGGGTCGGGTCGTGATGTTCATG
 
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JMSF050E15+           CAACCCTGAGAGATCCAGGTGGTTTCGAAGCCGCAGCGGCGGCGGATATCGAAGCCGGGG
JMFS001F05+                                                              AAGCCGGGG
                      ____________________________________________________________
consensus             CAACCCTGAGAGATCCAGGTGGTTTCGAAGCCGCAGCGGCGGCGGATATCGAAGCCGGGG
 
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JMSF050E15+           AGGAAAGCGTTGACTACGGCCTGATAAGAGTCCCAGCAAGATTGCGCCGAGAGCAAAGGC
JMFS015B01+                           CGGCCTGATAAGAGTCCCAGCAAGATTGCGCCGAGAGCAAAGGC
JMFS001F05+           AGGAAAGCGTTGACTACGGCCTGATAAGAGTCCCAGCAAGATTGCGCCGAGAGCAAAGGC
                      ____________________________________________________________
consensus             AGGAAAGCGTTGACTACGGCCTGATAAGAGTCCCAGCAAGATTGCGCCGAGAGCAAAGGC
 
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JMSF050E15+           GGGAGGAAGGAGTTGGTGCGGCGGAGATAGTCGGACTGGACGAGGCGGAGGCCCTGAAGG
JMFS015B01+           GGGAGGAAGGAGTTGGTGCGGCGGAGATAGTCGGACTGGACGAGGCGGAGGCCCTGAAGG
JMFS001F05+           GGGAGGAAGGAGTTGGTGCGGCGGAGATAGTCGGACTGGACGAGGCGGAGGCCCTGAAGG
                      ____________________________________________________________
consensus             GGGAGGAAGGAGTTGGTGCGGCGGAGATAGTCGGACTGGACGAGGCGGAGGCCCTGAAGG
 
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JMSF050E15+           ATGTACTGGCAATTCGTTGTAGTGTTCAAAGTCGGCCGCGAGGAGCTCTGCTCCACCAAT
JMFS015B01+           ATGTACTGGCAATTCGTTGTAGTGTTCAAAGTCGGCCGCGAGGAGCTCTGCTCCACCAAT
JMFS001F05+           ATGTACTGGCAATTCGTTGTAGTGTTCAAAGTCGGCCGCGAGGAGCTCTGCTCCACCAAT
                      ____________________________________________________________
consensus             ATGTACTGGCAATTCGTTGTAGTGTTCAAAGTCGGCCGCGAGGAGCTCTGCTCCACCAAT
 
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JMSF050E15+           CTCCGAAGAACATCGAAATCCAGAGGACACGACGAAGAAGAAGAATTGGTCTGTTGCTGC
JMFS015B01+           CTCCGAAGAACATCGAAATCCAGAGGACACGACGAAGAAGAAGAATTGGTCTGTTGCTGC
JMFS001F05+           CTCCGAAGAACATCGAAATCCAGAGGACACGACGAAGAAGAAGAATTGGTCTGTTGCTGC
                      ____________________________________________________________
consensus             CTCCGAAGAACATCGAAATCCAGAGGACACGACGAAGAAGAAGAATTGGTCTGTTGCTGC
 
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JMSF050E15+           AGTGAAACGTCGCTAACTGAAAGGGAAGGAGAAGCGATTTTAAAGAAGATAATGAAGAAG
JMFS015B01+           AGTGAAACGTCGCTAACTGAAAGGGAAGGAGAAGCGATTTTAAAGAAGATAATGAAGAAG
JMFS001F05+           AGTGAAACGTCGCTAACTGAAAGGGAAGGAGAAGCGATTTTAAAGAAGATAATGAAGAAG
                      ____________________________________________________________
consensus             AGTGAAACGTCGCTAACTGAAAGGGAAGGAGAAGCGATTTTAAAGAAGATAATGAAGAAG
 
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JMSF050E15+           ATGATGTAAATCGTTACTTGCATCATTCTATTTTCAGTTTTGTTAGTTGGGGGCGGGGGA
JMFS015B01+           ATGATGTAAATCGTTACTTGCATCATTCTATTTTCAGTTTTGTTAGTTGGGGGCGGGGGA
JMFS001F05+           ATGATGTAAATCGTTACTTGCATCATTCTATTTTCAGTTTTGTTAGTTGGGGGCGGGGGA
                      ____________________________________________________________
consensus             ATGATGTAAATCGTTACTTGCATCATTCTATTTTCAGTTTTGTTAGTTGGGGGCGGGGGA
 
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JMSF050E15+           ATTATGGTTCACGGAGGCGAGTAAGAATCTGAAACAGAGAAACGGGGGATTGAGGGAGGC
JMFS015B01+           ATTATGGTTCACGGAGGCGAGTAAGAATCTGAAACAGAGAAACGGGGGATTGAGGGAGGC
JMFS001F05+           ATTATGGTTCACGGAGGCGAGTAAGAATCTGAAACAGAGAAACGGGGGATTGAGGGAGGC
                      ____________________________________________________________
consensus             ATTATGGTTCACGGAGGCGAGTAAGAATCTGAAACAGAGAAACGGGGGATTGAGGGAGGC
 
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JMSF050E15+           GGCGGGGGAGACGGTGGTGGGTGGGAGGGGAGGATTGACTTTGCGCTGATCATTCATGGA
JMFS015B01+           GGCGGGGGAGACGGTGGTGGGTGGGAGGGGAGGATTGACTTTGCGCTGATCATTCATGGA
JMFS001F05+           GGCGGGGGAGACGGTGGTGGGTGGGAGGGGAGGATTGACTTTGCGCTGATCATTCATGGA
                      ____________________________________________________________
consensus             GGCGGGGGAGACGGTGGTGGGTGGGAGGGGAGGATTGACTTTGCGCTGATCATTCATGGA
 
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JMSF050E15+           AATGGAAATCTGGGTCGCCAAAATGGAGTAGCTAGCGAAACTTGAATATTGAGTTGGTTG
JMFS015B01+           AATGGAAATCTGGGTCGCCAAAATGGAGTAGCTAGCGAAACTTGAATATTGAGTTGGTTG
JMFS001F05+           AATGGAAATCTGGGTCGCCAAAATGGAGTAGCTAGCGAAACTTGAATATTGAGTTGGTTG
                      ____________________________________________________________
consensus             AATGGAAATCTGGGTCGCCAAAATGGAGTAGCTAGCGAAACTTGAATATTGAGTTGGTTG
 
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JMSF050E15+           TACTGGATTT                                                  
JMFS015B01+           TACTGGATTTAATTATTTGATTCAGAGACGACGATCTTGAAGAAAAGCTCTCTCACTAAA
JMFS001F05+           TACTGGATTTAATTATTTGATTCAGAGACGACGATCTTGAAGAAAAGCTCTCTCACTAAA
                      ____________________________________________________________
consensus             TACTGGATTTAATTATTTGATTCAGAGACGACGATCTTGAAGAAAAGCTCTCTCACTAAA