Contig 006178:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS007A03+                               ACGCTTTCAGTTCTGTAGATTTTGCATAAAAAGCCATCTT
                      ____________________________________________________________
consensus                                 ACGCTTTCAGTTCTGTAGATTTTGCATAAAAAGCCATCTT
 
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JMFS007A03+           TTCCCGGTTAAGGTTCTGTTGTGCAAGCCACTGACTTTGAGGAACGCCAAGCTCAACAAC
                      ____________________________________________________________
consensus             TTCCCGGTTAAGGTTCTGTTGTGCAAGCCACTGACTTTGAGGAACGCCAAGCTCAACAAC
 
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JMFS007A03+           TTTCGAACATTCCCTAAACCTCGCAGATTGCCACGCTTCAAATTCTTTCTTAAACTTCTG
                      ____________________________________________________________
consensus             TTTCGAACATTCCCTAAACCTCGCAGATTGCCACGCTTCAAATTCTTTCTTAAACTTCTG
 
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JMFS007A03+           CAATTCCTCCTCCTGAGGGTGTTCTCGGGGTTTGGGTTTCTCCAACTTCACGCTGCTATC
                      ____________________________________________________________
consensus             CAATTCCTCCTCCTGAGGGTGTTCTCGGGGTTTGGGTTTCTCCAACTTCACGCTGCTATC
 
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JMFS007A03+           GCTCCATCTGTCTTGATCACAGTATTCATAGCCATCAAAAGAACTCAACTTTTTATGCCT
                      ____________________________________________________________
consensus             GCTCCATCTGTCTTGATCACAGTATTCATAGCCATCAAAAGAACTCAACTTTTTATGCCT
 
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JMFS007A03+           CGAGGAATTCGTCGTGAGAGTGATGCGATCAATCGGGACCTCTCTCACCTCCTCCTCTTC
                      ____________________________________________________________
consensus             CGAGGAATTCGTCGTGAGAGTGATGCGATCAATCGGGACCTCTCTCACCTCCTCCTCTTC
 
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JMFS007A03+           GGGAGTGTTGCTTATTTTCGTTTCATTGTTTTTCTTGTTCTGCCTTGCAACGGGCTTTGA
                      ____________________________________________________________
consensus             GGGAGTGTTGCTTATTTTCGTTTCATTGTTTTTCTTGTTCTGCCTTGCAACGGGCTTTGA
 
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JMFS007A03+           ATCTAACGGTAACATATCCACTCCCATCAAACGGGCTACTACACTAGGTGCATTCCGTCC
JMFS050B05+                 CGGTAACATATCCACTCCCATCAAACGGGCTACTACACTAGGTGCATTCCGTCC
JMFS070F11+                                      CAAACGGGCTACTACACTAGGTGCATTCCGTCC
                      ____________________________________________________________
consensus             ATCTAACGGTAACATATCCACTCCCATCAAACGGGCTACTACACTAGGTGCATTCCGTCC
 
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JMFS007A03+           TTTGTTCGGTCTTCGACCAATTTCC                                   
JMFS050B05+           TNTGTTCGGTCTTCGACCAATTTCCTCATTAATAAGCTTTTTAATCGGAAGCTCAGGGGT
JMFF016K22+                               TTTCCTCATTAATAAGCTTTTTAATCGGAAGCTCAGGGGT
JMFS070F11+           TTTGTTCGGTCTTCGACCAATTTCCTCATTAATAAGCTTTTTAATCGGAAGCTCAGGGGT
JMFS001C12+                                              GCTTTTTAATCGGAAGCTCAGGGGT
                      ____________________________________________________________
consensus             TTTGTTCGGTCTTCGACCAATTTCCTCATTAATAAGCTTTTTAATCGGAAGCTCAGGGGT
 
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JMFS050B05+           ATACGAGTTCTTGTCAGACCATCCATTTGTCATATGATAAGCACACAGAATGTTATTATT
JMFF016K22+           ATACGAGTTCTTGTCAGACCATCCATTTGTCATATGATAAGCACACAGAATGTTATTATT
JMFS070F11+           ATACGAGTTCTTGTCAGACCATCCATTTGTCATATGATAAGCACACAGAATGTTATTATT
JMFS001C12+           ATACGAGTTCTTGTCAGACCATCCATTTGTCATATGATAAGCACACAGAATGTTATTATT
                      ____________________________________________________________
consensus             ATACGAGTTCTTGTCAGACCATCCATTTGTCATATGATAAGCACACAGAATGTTATTATT
 
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JMFS050B05+           GCCTCCGGTACAAAGTCTCTGGGAAACCTCTACGGGCAGGTCCAAACTGTTTCGAGGAGC
JMFF016K22+           GCCTCCGGTACAAAGTCTCTGGGAAACCTCTACGGGCAGGTCCAAACTGTTTCGAGGAGC
JMFS070F11+           GCCTCCGGTACAAAGTCTCTGGGAAACCTCTACGGGCAGGTCCAAACTGTTTCGAGGAGC
JMFS001C12+           GCCTCCGGTACAAAGTCTCTGGGAAACCTCTACGGGCAGGTCCAAACTGTTTCGAGGAGC
                      ____________________________________________________________
consensus             GCCTCCGGTACAAAGTCTCTGGGAAACCTCTACGGGCAGGTCCAAACTGTTTCGAGGAGC
 
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JMFS050B05+           CTCCAAACCACCCGGCTTCTTGTGAGAAACAAACTTCCTAGCCATCCCGTTTTCGCCAAA
JMFF016K22+           CTCCAAACCACCCGGCTTCTTGTGAGAAACAAACTTCCTAGCCATCCCGTTTTCGCCAAA
JMFS070F11+           CTCCAAACCACCCGGCTTCTTGTGAGAAACAAACTTCCTAGCCATCCCGTTTTCGCCAAA
JMFS001C12+           CTCCAAACCACCCGGCTTCTTGTGAGAAACAAACTTCCTAGCCATCCCGTTTTCGCCAAA
                      ____________________________________________________________
consensus             CTCCAAACCACCCGGCTTCTTGTGAGAAACAAACTTCCTAGCCATCCCGTTTTCGCCAAA
 
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JMFS050B05+           ATCAACTAGTTCAAACAAGCTTCCCATGCACACAATGGGACGAACCGATAGGTTACCCCA
JMFF016K22+           ATCAACTAGTTCAAACAAGCTTCCCATGCACACAATGGGACGAACCGATAGGTTACCCCA
JMFS070F11+           ATCAACTAGTTCAAACAAGCTTCCCATGCACACAATGGGACGAACCGATAGGTTACCCCA
JMFS001C12+           ATCAACTAGTTCAAACAAGCTTCCCATGCACACAATGGGACGAACCGATAGGTTACCCCA
                      ____________________________________________________________
consensus             ATCAACTAGTTCAAACAAGCTTCCCATGCACACAATGGGACGAACCGATAGGTTACCCCA
 
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JMFS050B05+           TTAAACCGAAAAGGTTAGACATTAGAATATTTCATGGACACGAAGCTCAACAGTTGAAGG
JMFF016K22+           TTAAACCGAAAAGGTTAGACATTAGAATATTTCATGGACACGAAGCTCAACAGTTGAAGG
JMFS070F11+           TTAAACCGAAAAGGTTAGACATTAGAATATTTCATGGACACGAAGCTCAACAGTTGAAGG
JMFS001C12+           TTAAACCGAAAAGGTTAGACATTAGAATATTTCATGGACACGAAGCTCAACAGTTGAAGG
                      ____________________________________________________________
consensus             TTAAACCGAAAAGGTTAGACATTAGAATATTTCATGGACACGAAGCTCAACAGTTGAAGG
 
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JMFS050B05+           AAGGAAGCAATAGAAACCGAAATTGTTAGGGGGACAGAAGTGAAAACTCAAGAATCCGCA
JMFF016K22+           AAGGAAGCAATAGAAACCGAAATTGTTAGGGGGACAGAAGTGAAAACTCAAGAATCCGCA
JMFS070F11+           AAGGAAGCAATAGAAACCGAAATTGTTAGGGGGACAGAAGTGAAAACTCAAGAATCCGCA
JMFS001C12+           AAGGAAGCAATAGAAACCGAAATTGTTAGGGGGACAGAAGTGAAAACTCAAGAATCCGCA
                      ____________________________________________________________
consensus             AAGGAAGCAATAGAAACCGAAATTGTTAGGGGGACAGAAGTGAAAACTCAAGAATCCGCA
 
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JMFS050B05+           GAAGAAGAGAGATGAAGGGAGAAACAGAGGAGAATGGGGGTGGAAACTGGAAAGTAGAAG
JMFF016K22+           GAAGAAGAGAGATGAAGGGAGAAACAGAGGAGAATGGGGGTGGAAACTGGAAAGTAGAAG
JMFS070F11+           GAAGAAGAGAGATGAAGGGAGAAACAGAGGAGAATGGGGGTGGAAACTGGAAAGTAGAAG
JMFS001C12+           GAAGAAGAGAGATGAAGGGAGAAACAGAGGAGAATGGGGGTGGAAACTGGAAAGTAGAAG
                      ____________________________________________________________
consensus             GAAGAAGAGAGATGAAGGGAGAAACAGAGGAGAATGGGGGTGGAAACTGGAAAGTAGAAG
 
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JMFS050B05+           CAGTAATTAGTATGATACTAAGAGGGGAAAGAAGAAGAAGAAGAAAAGGTGAGAGCTTTT
JMFF016K22+           CAGTAATTAGTATGATACTAAGAGGGGAAAGAAGAAGAAGAAGAAAAGGTGAGAGCTTTT
JMFS070F11+           CAGTAATTAGTATGATACTAAGAGGGGAAAGAAGAAGAAGAAGAAAAGGTGAGAGCTTTT
JMFS001C12+           CAGTAATTAGTATGATACTAAGAGGGGAAAGAAGAAGAAGAAGAAAAGGTGAGAGCTTTT
                      ____________________________________________________________
consensus             CAGTAATTAGTATGATACTAAGAGGGGAAAGAAGAAGAAGAAGAAAAGGTGAGAGCTTTT
 
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JMFS050B05+           AGCAT                                                       
JMFF016K22+           AGCATGAAAGTAAAC                                             
JMFS070F11+           AGCATGAAAGTAAACATCGCTGGAAAATGGAATCTCTCTACAAAAAGGTAGCTTGG    
JMFS001C12+           AGCATGAAAGTAAACATCGCTGGAAAATGGAATCTCTCTACAAAAAGGTAGCTTGGAGGT
                      ____________________________________________________________
consensus             AGCATGAAAGTAAACATCGCTGGAAAATGGAATCTCTCTACAAAAAGGTAGCTTGGAGGT