Contig 006174:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN045J23Sequence617006174 (2)ref|XP_006364782.1|4e-17PREDICTED: transcription factor LUX-like [Solanum tuberosum]
JMFS088F01Sequence614006174 (2)ref|XP_009790047.1|3e-56PREDICTED: transcription factor PCL1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS088F01+                                        GAGTTGTTTCCCCCGCCGCCGCCCCNTCCGC
                      ____________________________________________________________
consensus                                          GAGTTGTTTCCCCCGCCGCCGCCCCNTCCGC
 
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JMFS088F01+           CATTAGAGAGACCTTGCATACGCTTCAGATAGAGCCTGTATTTCTGCAAATGGCTCGCCA
                      ____________________________________________________________
consensus             CATTAGAGAGACCTTGCATACGCTTCAGATAGAGCCTGTATTTCTGCAAATGGCTCGCCA
 
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JMFS088F01+           CGTTCTCGCGCGTCAGGCCGTCCACGCTCATCAGCTGCATTATGGTCTTGGGCACCGCAT
                      ____________________________________________________________
consensus             CGTTCTCGCGCGTCAGGCCGTCCACGCTCATCAGCTGCATTATGGTCTTGGGCACCGCAT
 
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JMFS088F01+           TCTTGATCCCCAGGTGCGCCACCGCGTCCACGAATCTCTTGTGGAGCTGCGGGGTCCACA
JMFN045J23+                                                      GAGCTGCGGGGTCCACA
                      ____________________________________________________________
consensus             TCTTGATCCCCAGGTGCGCCACCGCGTCCACGAATCTCTTGTGGAGCTGCGGGGTCCACA
 
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JMFS088F01+           CGAGGCGGGGCCGCTTCAGGGTCCGGGCGGGCTCGTCGCCGCCGCCGGAGGCGGCGGCGG
JMFN045J23+           CGAGGCGGGGCCGCTTCAGGGTCCGGGCGGGCTCGTCGCCGCCGCCGGAGGCGGCGGCGG
                      ____________________________________________________________
consensus             CGAGGCGGGGCCGCTTCAGGGTCCGGGCGGGCTCGTCGCCGCCGCCGGAGGCGGCGGCGG
 
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JMFS088F01+           CGCCGCCCAAGTCGGCGGAGTCAAATTCGGCGGAGGAGTTGGGCTGGGAGGACGGCGGCG
JMFN045J23+           CGCCGCCCAAGTCGGCGGAGTCAAATTCGGCGGAGGAGTTGGGCTGGGAGGACGGCGGCG
                      ____________________________________________________________
consensus             CGCCGCCCAAGTCGGCGGAGTCAAATTCGGCGGAGGAGTTGGGCTGGGAGGACGGCGGCG
 
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JMFS088F01+           TCTGAACCGCCATCAACGGCGGCTGTATGGGCGGGTGGTGAGGGCTACTGGGATTCTGAA
JMFN045J23+           TCTGAACCGCCATCAACGGCGGCTGTATGGGCGGGTGGTGAGGGCTACTGGGATTCTGAA
                      ____________________________________________________________
consensus             TCTGAACCGCCATCAACGGCGGCTGTATGGGCGGGTGGTGAGGGCTACTGGGATTCTGAA
 
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JMFS088F01+           TATCAAACGCCAGAGCTAGATCAGGAGTAATTAGGGTTTGAGATAAGGGCATAAGCTCAT
JMFN045J23+           TATCAAACGCCAGAGCTAGATCAGGAGTAATTAGGGTTTGAGATAAGGGCATAAGCTCAT
                      ____________________________________________________________
consensus             TATCAAACGCCAGAGCTAGATCAGGAGTAATTAGGGTTTGAGATAAGGGCATAAGCTCAT
 
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JMFS088F01+           CCGGAGGAGGAAGCTCCTCTTCCCATTTCGCAAACCAATTGGAGTCCTCCTCCCTCATTT
JMFN045J23+           CCGGAGGAGGAAGCTCCTCTTCCCATTTCGCAAACCAATTGGAGTCCTCCTCCCTCATTT
                      ____________________________________________________________
consensus             CCGGAGGAGGAAGCTCCTCTTCCCATTTCGCAAACCAATTGGAGTCCTCCTCCCTCATTT
 
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JMFS088F01+           CTCCACCGCCGCCAAAATCCCGGTTATGAAGAAACCCACCCGCCGGAATTCCAAGATTCG
JMFN045J23+           CTCCACCGCCGCCAAAATCCCGGTTATGAAGAAACCCACCCGCCGGAATTCCAAGATTCG
                      ____________________________________________________________
consensus             CTCCACCGCCGCCAAAATCCCGGTTATGAAGAAACCCACCCGCCGGAATTCCAAGATTCG
 
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JMFS088F01+           AACTTTTTAACCGGCAAAGCTCAAACTCAAACTCAAACCCAGA                 
JMFN045J23+           AACTTTTTAACCGGCAAAGCTCAAACTCAAACTCAAACCCAGAGAGAGGGAGGGGGTAAA
                      ____________________________________________________________
consensus             AACTTTTTAACCGGCAAAGCTCAAACTCAAACTCAAACCCAGAGAGAGGGAGGGGGTAAA
 
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JMFN045J23+           CACTGAAAAGAAGTGCAGAGAATCAGAAAAAAAAGATGAAATCTTTATAGATGGGTATCA
                      ____________________________________________________________
consensus             CACTGAAAAGAAGTGCAGAGAATCAGAAAAAAAAGATGAAATCTTTATAGATGGGTATCA
 
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JMFN045J23+           TTTATCCTCAATCTCCCTTTCAGAAAGCACCTGATTTTTGGATAGAGGAACACAATGAAT
                      ____________________________________________________________
consensus             TTTATCCTCAATCTCCCTTTCAGAAAGCACCTGATTTTTGGATAGAGGAACACAATGAAT
 
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JMFN045J23+           GAATGAATAGGTGGGGGTGGGGGTGAAGGTGGAGGGGGGTTCGAGGTGGATCTTGTTTTC
                      ____________________________________________________________
consensus             GAATGAATAGGTGGGGGTGGGGGTGAAGGTGGAGGGGGGTTCGAGGTGGATCTTGTTTTC