Contig 006172:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011B23Sequence399006072 (3)ref|XP_006361724.1|6e-59PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Solanum tube714006172 (4)gb|AAO25536.1|3e-68cellulose synthase [Populus tremuloides]
JMFF037H11Sequence587006072 (3)emb|CBI21020.3|5e-99unnamed protein product [Vitis vinifera]630006172 (4)ref|XP_002515536.1|4e-64Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus commu
JMFF044H15Sequence647006072 (3)emb|CBI21020.3|3e-107unnamed protein product [Vitis vinifera]628006172 (4)gb|AAO25536.1|1e-50cellulose synthase [Populus tremuloides]
JMFN044H17Sequence545006172 (4)ref|XP_002515536.1|1e-19Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus commu

Alignment

This contig is upended


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rJMFF011B23+                            TCTAAAAGTACTTGCCGGGATTGATACCAATTTCACCGTCAC
                      ____________________________________________________________
consensus                               TCTAAAAGTACTTGCCGGGATTGATACCAATTTCACCGTCAC
 
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rJMFF037H11+                                                  TACGTGTTCAAGTGGACATC
rJMFF011B23+          TTCAAAGGCTTCCGATGAAGATGGAGATTTCGCTGAGCTTTACGTGTTCAAGTGGACATC
                      ____________________________________________________________
consensus             TTCAAAGGCTTCCGATGAAGATGGAGATTTCGCTGAGCTTTACGTGTTCAAGTGGACATC
 
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rJMFF037H11+          CCTTNT-CATTCCCCCGACCACAGTCCTTATAGTCAACCTCGTAGGCATAGTGGCAGGCG
rJMFF011B23+          CCTTCTCCATTCCCCCGACCACAGTCCTTATAGTCAACCTCGTAGGCATAGTGGCAGGCG
rJMFF044H15+                                                    TAGGCATAGTGGCAGGCG
                      ____________________________________________________________
consensus             CCTTCTCCATTCCCCCGACCACAGTCCTTATAGTCAACCTCGTAGGCATAGTGGCAGGCG
 
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rJMFF037H11+          TCTCGTTCGCCATAAACAGCGGGTATCAGTCGTGGGGCCCTCTATTCGGGAGACTGTTCT
rJMFF011B23+          TCTCGTTCGCCATAAACAGCGGGTATCAGTCGTGGGGCCCTCTATTCGGGAGACTGTTCT
rJMFF044H15+          TCTCGTTCGCCATAAACAGCGGGTATCAGTCGTGGGGCCCTCTATTCGGGAGACTGTTCT
                      ____________________________________________________________
consensus             TCTCGTTCGCCATAAACAGCGGGTATCAGTCGTGGGGCCCTCTATTCGGGAGACTGTTCT
 
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rJMFF037H11+          TCGCCATTTGGGTCATCGTGCACTTGTATCCGTTCCTCAAAGGTCTGTTGGGCAGGCAGA
rJMFF011B23+          TCGCCATTTGGGTCATCGTGCACTTGTATCCGTTCCTCAAAGGTCTGTTGGGCAGGCAGA
rJMFF044H15+          TCGCCATTTGGGTCATCGTGCACTTGTATCCGTTCCTCAAAGGTCTGTTGGGCAGGCAGA
JMFN044H17+                                                                  GCAGA
                      ____________________________________________________________
consensus             TCGCCATTTGGGTCATCGTGCACTTGTATCCGTTCCTCAAAGGTCTGTTGGGCAGGCAGA
 
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rJMFF037H11+          ACCGCACTCCCACCATCGTCATCGTCTGGTCCATACTTCTTGCATCCATCTTCTCTTTGC
rJMFF011B23+          ACCGCACTCCCACCATCGTCATCGTCTGGTCCATACTTCTTGCATCCATCTTCTCTTTGC
rJMFF044H15+          ACCGCACTCCCACCATCGTCATCGTCTGGTCCATACTTCTTGCATCCATCTTCTCTTTGC
JMFN044H17+           ACCGCACTCCCACCATCGTCATCGTCTGGTCCATACTTCTTGCATCCATCTTCTCTTTGC
                      ____________________________________________________________
consensus             ACCGCACTCCCACCATCGTCATCGTCTGGTCCATACTTCTTGCATCCATCTTCTCTTTGC
 
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rJMFF037H11+          TATGGGTGCGAATAGACCCCTTCACTTCGGACAGCGCAAAAGCGGCCGCAGGGGGTCAAT
rJMFF011B23+          TATGGGTGCGAATAGACCCCTTCACTTCGGACAGCGCAAAAGCGGCCGCAGGGGGTCAAT
rJMFF044H15+          TATGGGTGCGAATAGACCCCTTCACTTCGGACAGCGCAAAAGCGGCCGCAGGGGGTCAAT
JMFN044H17+           TATGGGTGCGAATAGACCCCTTCACTTCGGACAGCGCAAAAGCGGCCGCAGGGGGTCAAT
                      ____________________________________________________________
consensus             TATGGGTGCGAATAGACCCCTTCACTTCGGACAGCGCAAAAGCGGCCGCAGGGGGTCAAT
 
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rJMFF037H11+          GTGGCATCAACTGCTAGCCGGTTTTGGATGCCATTTTGTCGAAGGAAAGCCCTAAACCGG
rJMFF011B23+          GTGGCATCAACTGCTAGCCGGTTTTGGATGCCATTTTGTCGAAGGAAAGCCCTAAACCGG
rJMFF044H15+          GTGGCATCAACTGCTAGCCGGTTTTGGATGCCATTTTGTCGAAGGAAAGCCCTAAACCGG
JMFN044H17+           GTGGCATCAACTGCTAGCCGGTTTTGGATGCCATTTTGTCGAAGGAAAGCCCTAAACCGG
                      ____________________________________________________________
consensus             GTGGCATCAACTGCTAGCCGGTTTTGGATGCCATTTTGTCGAAGGAAAGCCCTAAACCGG
 
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rJMFF037H11+          CAGTGTAACCGTGTATATAGGCAAGAAACCGAGGTGCGAAAATTGCGCGGGGGATGGTCT
rJMFF011B23+          CAGTGTAACCGTGTATATAGGCAAGAAACCGAGGTGCGAAAATTGCGCGGGGGATGGTCT
rJMFF044H15+          CAGTGTAACCGTGTATATAGGCAAGAAACCGAGGTGCGAAAATTGCGCGGGGGATGGTCT
JMFN044H17+           CAGTGTAACCGTGTATATAGGCAAGAAACCGAGGTGCGAAAATTGCGCGGGGGATGGTCT
                      ____________________________________________________________
consensus             CAGTGTAACCGTGTATATAGGCAAGAAACCGAGGTGCGAAAATTGCGCGGGGGATGGTCT
 
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rJMFF037H11+          TATAGTTAAGCTATTGTTGTATCATGTTTCTTTGCAAGAATGGTTTGGGATGGGTATTTT
rJMFF011B23+          TATAGTTAAGCTATTGTTGTATCATGTTTCTTTGCAAGAATGGTTTGGGATGGGTATTTT
rJMFF044H15+          TATAGTTAAGCTATTGTTGTATCATGTTTCTTTGCAAGAATGGTTTGGGATGGGTATTTT
JMFN044H17+           TATAGTTAAGCTATTGTTGTATCATGTTTCTTTGCAAGAATGGTTTGGGATGGGTATTTT
                      ____________________________________________________________
consensus             TATAGTTAAGCTATTGTTGTATCATGTTTCTTTGCAAGAATGGTTTGGGATGGGTATTTT
 
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rJMFF037H11+          GTCATAGACTTCTGCTGTTACTTGGCAGTGACCAAAATTTGTTTAAATTTGTAGTGTGAA
rJMFF011B23+          GTCATAGACTTCTGCTGTTACTTGGCAGTGACCAAAATTTGTTTAAATTTGTAGTGTGAA
rJMFF044H15+          GTCATAGACTTCTGCTGTTACTTGGCAGTGACCAAAATTTGTTTAAATTTGTAGTGTGAA
JMFN044H17+           GTCATAGACTTCTGCTGTTACTTGGCAGTGACCAAAATTTGTTTAAATTTGTAGTGTGAA
                      ____________________________________________________________
consensus             GTCATAGACTTCTGCTGTTACTTGGCAGTGACCAAAATTTGTTTAAATTTGTAGTGTGAA
 
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rJMFF037H11+          AAGTATTCTCTGACAGGATGTTCTTCACAAATGTATTCATGGCAGCAACTTCAGGACCTA
rJMFF011B23+          AAGTATTCTCTGACAGGATGTTCTTCACAAATGTATTCATGGCAGCAACTTCAGGACCTA
rJMFF044H15+          AAGTATTCTCTGACAGGATGTTCTTCACAAATGTATTCATGGCAGCAACTTCAGGACCTA
JMFN044H17+           AAGTATTCTCTGACAGGATGTTCTTCACAAATGTATTCATGGCAGCAACTTCAGGACCTA
                      ____________________________________________________________
consensus             AAGTATTCTCTGACAGGATGTTCTTCACAAATGTATTCATGGCAGCAACTTCAGGACCTA
 
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rJMFF037H11+          AAAAGAAAAGT                                                 
rJMFF011B23+          AAAAGAAAAGT                                                 
rJMFF044H15+          AAAAGAAAAGTAATTTGTTGATGTTCTTG                               
JMFN044H17+           AAAAGAAAAGTAATTTGTTGATGTTCTTGTATTTGTTTTCTTAAAAACCATAATTGTCAA
                      ____________________________________________________________
consensus             AAAAGAAAAGTAATTTGTTGATGTTCTTGTATTTGTTTTCTTAAAAACCATAATTGTCAA
 
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JMFN044H17+           TGTAATTTTGTTGTAGACGATXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTCTTTC
                      ____________________________________________________________
consensus             TGTAATTTTGTTGTAGACGATNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTCTTTC