Contig 006163:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN018C01Sequence466006163 (4)ref|XP_009593019.1|1e-12PREDICTED: protein TAP1-like [Nicotiana tomentosiformis]
JMFN034M10Sequence554006163 (4)ref|XP_009593019.1|2e-12PREDICTED: protein TAP1-like [Nicotiana tomentosiformis]
JMFN040C05Sequence568006163 (4)ref|XP_009593019.1|3e-12PREDICTED: protein TAP1-like [Nicotiana tomentosiformis]
JMFN044O01Sequence546006163 (4)ref|XP_009593019.1|2e-12PREDICTED: protein TAP1-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFN034M10+                                                                GAAGCCA
JMFN044O01+                                                                GAAGCCA
JMFN040C05+                                           AATTTGCCAAATTCTGCTTGTGAAGCCA
                      ____________________________________________________________
consensus                                             AATTTGCCAAATTCTGCTTGTGAAGCCA
 
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JMFN034M10+           CATAACATTTATTTATAAATGAAAATATAACAGAAATTGATTCTTCAGAAGGTAGGGAAA
JMFN044O01+           CATAACATTTATTTATAAATGAAAATATAACAGAAATTGATTCTTCAGAAGGTAGGGAAA
JMFN040C05+           CATAACATTTATTTATAAATGAAAATATAACAGAAATTGATTCTTCAGAAGGTAGGGAAA
                      ____________________________________________________________
consensus             CATAACATTTATTTATAAATGAAAATATAACAGAAATTGATTCTTCAGAAGGTAGGGAAA
 
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JMFN034M10+           AAAGAAACTATAAAACCTAATTAAGAAATACATTTTATTTAAAAATAAAAATAAATAAAA
JMFN044O01+           AAAGAAACTATAAAACCTAATTAAGAAATACATTTTATTTAAAAATAAAAATAAATAAAA
JMFN018C01+                      AAAACCTAATTAAGAAATACATTTTATTTAAAAATAAAAATAAATAAAA
JMFN040C05+           AAAGAAACTATAAAACCTAATTAAGAAATACATTTTATTTAAAAATAAAAATAAATAAAA
                      ____________________________________________________________
consensus             AAAGAAACTATAAAACCTAATTAAGAAATACATTTTATTTAAAAATAAAAATAAATAAAA
 
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JMFN034M10+           GGCACATTTTTATGTGGCTTCAACTTGGGGTACATTTTGAATTTAATCAAATTCTAGGGA
JMFN044O01+           GGCACATTTTTATGTGGCTTCAACTTGGGGTACATTTTGAATTTAATCAAATTCTAGGGA
JMFN018C01+           GGCACATTTTTATGTGGCTTCAACTTGGGGTACATTTTGAATTTAATCAAATTCTAGGGA
JMFN040C05+           GGCACATTTTTATGTGGCTTCAACTTGGGGTACATTTTGAATTTAATCAAATTCTAGGGA
                      ____________________________________________________________
consensus             GGCACATTTTTATGTGGCTTCAACTTGGGGTACATTTTGAATTTAATCAAATTCTAGGGA
 
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JMFN034M10+           GTTGGACCGCATTTCTCATTTTTGCAGCTGGTTATACAGGTATCCTGTTTCTCTTCATCA
JMFN044O01+           GTTGGACCGCATTTCTCATTTTTGCAGCTGGTTATACAGGTATCCTGTTTCTCTTCATCA
JMFN018C01+           GTTGGACCGCATTTCTCATTTTTGCAGCTGGTTATACAGGTATCCTGTTTCTCTTCATCA
JMFN040C05+           GTTGGACCGCATTTCTCATTTTTGCAGCTGGTTATACAGGTATCCTGTTTCTCTTCATCA
                      ____________________________________________________________
consensus             GTTGGACCGCATTTCTCATTTTTGCAGCTGGTTATACAGGTATCCTGTTTCTCTTCATCA
 
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JMFN034M10+           TTATTGTTGTTGCGGGTGCTTTGACTAGACACGCATTGGTTAAGACAGTCGAGGGTACAA
JMFN044O01+           TTATTGCTGTTGCGGGTGCTTTGACTAGACACGCATTGGTTAAGACAGTCGAGGGTACAA
JMFN018C01+           TTATTGTTGTTGCGGGTGCTTTGACTAGACACGCATTGGTTAAGACAGTCGAGGGTACAA
JMFN040C05+           TTATTGTTGTTGCGGGTGCTTTGACTAGACACGCATTGGTTAAGACAGTCGAGGGTACAA
                      ____________________________________________________________
consensus             TTATTGTTGTTGCGGGTGCTTTGACTAGACACGCATTGGTTAAGACAGTCGAGGGTACAA
 
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JMFN034M10+           TGGAAGACGGGACGCGAGGGGAGCGGCGGATCGCAGTGCTTCGGGCAGAATTTCAGGCAG
JMFN044O01+           TGGAAGACGGGACGCGAGGGGAGCGGCGGATCGCAGTGCTTCGGGCAGAATTTCAGGCAG
JMFN018C01+           TGGAAGACGGGACGCGAGGGGAGCGGCGGATCGCAGTGCTTCGGGCAGAATTTCAGGCAG
JMFN040C05+           TGGAAGACGGGACGCGAGGGGAGCGGCGGATCGCAGTGCTTCGGGCAGAATTTCAGGCAG
                      ____________________________________________________________
consensus             TGGAAGACGGGACGCGAGGGGAGCGGCGGATCGCAGTGCTTCGGGCAGAATTTCAGGCAG
 
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JMFN034M10+           GCCGGGGCTGGCAATCCGACCACCCTACATTCCCTCATGCACATTGCGATGCACCCCAGT
JMFN044O01+           GCCGGGGCTGGCAATCCGACCACCCTACATTCCCTCATGCACATTGCGATGCACCCCAGT
JMFN018C01+           GCCGGGGCTGGCAATCCGACCACCCTACATTCCCTCATGCACATTGCGATGCACCCCAGT
JMFN040C05+           GCCGGGGCTGGCAATCCGACCACCCTACATTCCCTCATGCACATTGCGATGCACCCCAGT
                      ____________________________________________________________
consensus             GCCGGGGCTGGCAATCCGACCACCCTACATTCCCTCATGCACATTGCGATGCACCCCAGT
 
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JMFN034M10+           TTCGCGAAGTTCGCGGAAGCGGATGGCGCCGCCGCCAACACAACCACCCAGGCCAACACC
JMFN044O01+           TTCGCGAAGTTCGCGGAAGCGGATGGCGCCGCCGCCAACACAACCACCCAGGCCAACACC
JMFN018C01+           TTCGCGAAGTTCGCGGAAGCGGATGGCGCCGCCGCCAACACAACCACCCAGGCCAACACC
JMFN040C05+           TTCGCGAAGTTCGCGGAAGCGGATGGCGCCGCCGCCAACACAACCACCCAGGCCAACACC
                      ____________________________________________________________
consensus             TTCGCGAAGTTCGCGGAAGCGGATGGCGCCGCCGCCAACACAACCACCCAGGCCAACACC
 
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JMFN034M10+           GCCGCCGCAATTAGCTTCATCATTTTCCCCGCCATGCCGATCGATATATATGATATT   
JMFN044O01+           GCCGCCGCAATTAGCTTCATCATTTTCCCCGCCATGCCGATCGATATATATGATATT   
JMFN018C01+           GCCGCCGCAATTAGCTTCATCATTTTCCCCGCCATGCCGATCGATATATATGATATT   
JMFN040C05+           GCCGCCGCAATTAGCTTCATCATTTTCCCCGCCATGCCGATCGATATATATGATATTTCT
                      ____________________________________________________________
consensus             GCCGCCGCAATTAGCTTCATCATTTTCCCCGCCATGCCGATCGATATATATGATATTTCT