| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019A07 | Sequence | 326 | 020591 | gb|ACU19661.1| | 1e-12 | unknown [Glycine max] | 493 | 006162 (5) | ref|XP_009609407.1| | 4e-61 | PREDICTED: coatomer subunit gamma [Nicotiana tomentosiformis] |
| JMFN039C23 | Sequence | 630 | 006162 (5) | ref|XP_009795130.1| | 1e-90 | PREDICTED: coatomer subunit gamma [Nicotiana sylvestris] | |||||
| JMFS068F07 | Sequence | 479 | 006162 (5) | gb|KJB47485.1| | 9e-45 | hypothetical protein B456_008G028500 [Gossypium raimondii] gb|KJB47486.1| hypoth | |||||
| JMFS104C05 | Sequence | 598 | 006162 (5) | ref|XP_009609407.1| | 3e-73 | PREDICTED: coatomer subunit gamma [Nicotiana tomentosiformis] | |||||
| JMFS168G09 | Sequence | 582 | 006162 (5) | ref|XP_007042213.1| | 6e-49 | Coatomer gamma-2 subunit / gamma-2 coat protein / gamma-2 COP, putative isoform | |||||
This contig is upended
. : . : . : . : . : . :
JMFS168G09+ ACGAAAACACATTTTAACTAGCATGTTTCATTGTGTCTATAATCCCG
____________________________________________________________
consensus ACGAAAACACATTTTAACTAGCATGTTTCATTGTGTCTATAATCCCG
. : . : . : . : . : . :
JMFS168G09+ CCGGGGGAGGGGGAGAGTAAATTGATTACAAAATTTAGAATGAGTACAATGAAAATGCCC
____________________________________________________________
consensus CCGGGGGAGGGGGAGAGTAAATTGATTACAAAATTTAGAATGAGTACAATGAAAATGCCC
. : . : . : . : . : . :
JMFS168G09+ AATTAGGCAAACTTCCTTAGAAACAACTTTCAGATATATATATATAATGTACTCAAGACA
JMFN039C23+ TTCAGATATATATATATAATGTACTCAAGACA
____________________________________________________________
consensus AATTAGGCAAACTTCCTTAGAAACAACTTTCAGATATATATATATAATGTACTCAAGACA
. : . : . : . : . : . :
JMFS168G09+ TCTACAGCATTCAACAAAAGTACTAAAAAGTGAATCTCAACGGCAAGCCAA-AGTCTGAA
rJMFF019A07- ACAAAAGTACTAAAANGTGAATCTCAACGGCAAGCCAANAGTCTGAA
JMFN039C23+ TCTACAGCATTCAACAAAAGTACTAAAAAGTGAATCTCAACGGCAAGCCAA-AGTCTGAA
____________________________________________________________
consensus TCTACAGCATTCAACAAAAGTACTAAAAAGTGAATCTCAACGGCAAGCCAA-AGTCTGAA
. : . : . : . : . : . :
JMFS168G09+ CAGCACCTGCTGGCTCGAAAAAAAGCCCATTTTAACTTTTAACTGTCCACCTTTCCCTCT
rJMFF019A07- CNGCACCTGCTGGCTCG-AAAANAGCCCATTTTAACTTTTANNTGTCCACCTTTCCCTCT
JMFN039C23+ CAGCACCTGCTGGCTCG-AAAAAAGCCCATTTTAACTTTTAACTGTCCACCTTTCCCTCT
____________________________________________________________
consensus CAGCACCTGCTGGCTCG-AAAAAAGCCCATTTTAACTTTTAACTGTCCACCTTTCCCTCT
. : . : . : . : . : . :
JMFS168G09+ AACAAAACTAACCACTTGCAACAATTTCGTGAATAGCATCGCTGACAGATGCATCCTCAG
JMFS104C05+ AACTAACCACTTGCAACAATTTCGTGAATAGCATCGCTGACAGATGCATCCTCAG
rJMFF019A07- AACNAAANTAACCACTTGNAACAATTTCNTGAATANCATCGCTGACAGATGNATCCTCAN
JMFS068F07+ AACTAACCACTTGCAACAATTTCGTGAATAGCATCGCTGACAGATGCATCCTCAG
JMFN039C23+ AACAAAACTAACCACTTGCAACAATTTCGTGAATAGCATCGCTGACAGATGCATCCTCAG
____________________________________________________________
consensus AACAAAACTAACCACTTGCAACAATTTCGTGAATAGCATCGCTGACAGATGCATCCTCAG
. : . : . : . : . : . :
JMFS168G09+ ATCTAACGGCCAACTTCATGGCAACCTCTTTCTGCCCATCAATTCCAAATGCTAACCTAA
JMFS104C05+ ATCTAACGGCCAACTTCATGGCAACCTCTTTCTGCCCATCAATTCCAAATGCTAACCTAA
rJMFF019A07- ATCTAACGGCCAACTTCATGGCAACCTCTTTCTGCCCATCNNTTCCAAATGCTAACCTAA
JMFS068F07+ ATCTAACGGCCAACTTCATGGCAACCTCTTTCTGCCCATCAATTCCAAATGCTAACCTAA
JMFN039C23+ ATCTAACGGCCAACTTCATGGCAACCTCTTTCTGCCCATCAATTCCAAATGCTAACCTAA
____________________________________________________________
consensus ATCTAACGGCCAACTTCATGGCAACCTCTTTCTGCCCATCAATTCCAAATGCTAACCTAA
. : . : . : . : . : . :
JMFS168G09+ CAAGCACCTTTATATTGCCTATGTACACACCAGATAGTAAACAAGCATGTGATCTTGAAT
JMFS104C05+ CAAGCACCTTTATATTGCCTATGTACACACCAGATAGTAAACAAGCATGTGATCTTGAAT
rJMFF019A07- CAAGCACCTTTATATTGCCTATGTACACACCANATAGTAAACAAGCATGTGATCTTGAAT
JMFS068F07+ CAAGCACCTTTATATTGCCTATGTACACACCAGATAGTAAACAAGCATGTGATCTTGAAT
JMFN039C23+ CAAGCACCTTTATATTGCCTATGTACACACCAGATAGTAAACAAGCATGTGATCTTGAAT
____________________________________________________________
consensus CAAGCACCTTTATATTGCCTATGTACACACCAGATAGTAAACAAGCATGTGATCTTGAAT
. : . : . : . : . : . :
JMFS168G09+ TACTTGGGACAGCTTCCGTGCCCTCACAGGGTTGCATGCCAAGGAGATTAATGACTGCAT
JMFS104C05+ TACTTGGGACAGCTTCCGTGCCCTCACAGGGTTGCATGCCAAGGAGATTAATGACTGCAT
rJMFF019A07- TACTTGGGACAGCTTCCGTGCCCTCACAGGGTTGCATGCCNAGGANATTAATGACTGCAT
JMFS068F07+ TACTTGGGACAGCTTCCGTGCCCTCACAGGGTTGCATGCCAAGGAGATTAATGACTGCAT
JMFN039C23+ TACTTGGGACAGCTTCCGTGCCCTCACAGGGTTGCATGCCAAGGAGATTAATGACTGCAT
____________________________________________________________
consensus TACTTGGGACAGCTTCCGTGCCCTCACAGGGTTGCATGCCAAGGAGATTAATGACTGCAT
. : . : . : . : . : . :
JMFS168G09+ TCACAGCCTCAGCCAAGCTTTCCCTAGGGCCAAGACCATATTCATCTACACGCTCG
JMFS104C05+ TCACAGCCTCAGCCAAGCTTTCCCTAGGGCCAAGACCATATTCATCTACACGCTCGCTAT
rJMFF019A07- TCACAGCCTCNNNCAANCTTTCCCTAGGGCCAAGACCATATTCATCTACACGCTCGCTAT
JMFS068F07+ TCACAGCCTCAGCCAAGCTTTCCCTAGGGCCAAGAC
JMFN039C23+ TCACAGCCTCAGCCAAGCTTTCCCTAGGGCCAAGACCATATTCATCTACACGCTCGCTAT
____________________________________________________________
consensus TCACAGCCTCAGCCAAGCTTTCCCTAGGGCCAAGACCATATTCATCTACACGCTCGCTAT
. : . : . : . : . : . :
JMFS104C05+ CTGGGCCCAAGCTTTCCCAGGCATTCCTAAAATTGGAGACGCCAACTTTAAGTATATAGT
rJMFF019A07- CTGGGCCCAAGCTTTCCCNGGCATTCCTAAAATTGGANACGCCAACTTTAAGTATATAGT
JMFN039C23+ CTGGGCCCAAGCTTTCCCAGGCATTCCTAAAATTGGAGACGCCAACTTTAAGTATATAGT
____________________________________________________________
consensus CTGGGCCCAAGCTTTCCCAGGCATTCCTAAAATTGGAGACGCCAACTTTAAGTATATAGT
. : . : . : . : . : . :
JMFS104C05+ CTGCAGCAACCACGTCAAGGTCCTCTAGCTGGTATTCATCTTCCA
rJMFF019A07- CTGCAGCAACCACGTCAAGGTCCTCTA
JMFN039C23+ CTGCAGCAACCACGTCAAGGTCCTCTAGCTGGTATTCATCTTCCACGCCATCTTCCTCAG
____________________________________________________________
consensus CTGCAGCAACCACGTCAAGGTCCTCTAGCTGGTATTCATCTTCCACGCCATCTTCCTCAG
. : . : . : . : . : . :
JMFN039C23+ CTTCACCAGTCGACGGATCAACCTCTTTAACAATGAACCTCAATGTATTAGAGAATTTCC
____________________________________________________________
consensus CTTCACCAGTCGACGGATCAACCTCTTTAACAATGAACCTCAATGTATTAGAGAATTTCC