Contig 006160:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051B07Sequence571006160 (4)ref|XP_010094140.1|4e-83Polyadenylate-binding protein 2 [Morus notabilis] gb|EXB55273.1| Polyadenylate-b
JMFN038F06Sequence613006160 (4)emb|CDP20626.1|9e-91unnamed protein product [Coffea canephora]
JMSF028N17Sequence658006160 (4)emb|CDP20626.1|8e-91unnamed protein product [Coffea canephora]750006160 (4)emb|CDP20626.1|5e-90unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF051B07+                                               CATATCCATAAGGAGTATAGAAGA
                      ____________________________________________________________
consensus                                                 CATATCCATAAGGAGTATAGAAGA
 
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JMFF051B07+           AAGGAGCTGGGTATGGTGTCCTGCCCCGAAAGCCCATATAAGGATTGGGACGTCGTGGAC
JMSF028N17+                      TATGGTGTCCTGCCCCGAAAGCCCATATAAGGATTGGGACGTCGTGGAC
rJMSF028N17-                     TATGGTGTCCTGCCCCGAAAGCCCATATAAGGATTGGGACGTCGTGGAC
JMFN038F06+                      TATGGTGTCCTGCCCCGAAAGCCCATATAAGGATTGGGACGTCGTGGAC
                      ____________________________________________________________
consensus             AAGGAGCTGGGTATGGTGTCCTGCCCCGAAAGCCCATATAAGGATTGGGACGTCGTGGAC
 
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JMFF051B07+           GGAAATGCTTCATGCCAGGAATATTAGTTCGTTTTGCCGATACCTTTAGTTGGCGGCCAT
JMSF028N17+           GGAAATGCTTCATGCCAGGAATATTAGTTCGTTTTGCCGATACCTTTAGTTGGCGGCCAT
rJMSF028N17-          GGAAATGCTTCATGCCAGGAATATTAGTTCGTTTTGCCGATACCTTTAGTTGGCGGCCAT
JMFN038F06+           GGAAATGCTTCATGCCAGGAATATTAGTTCGTTTTGCCGATACCTTTAGTTGGCGGCCAT
                      ____________________________________________________________
consensus             GGAAATGCTTCATGCCAGGAATATTAGTTCGTTTTGCCGATACCTTTAGTTGGCGGCCAT
 
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JMFF051B07+           GAAGCTCAGACTCATTCAGAAGAAGGGCCTCTTGAACAGCTTCTTGTTCAAGAAATTCAA
JMSF028N17+           GAAGCTCAGACTCATTCAGAAGAAGGGCCTCTTGAACAGCTTCTTGTTCAAGAAATTCAA
rJMSF028N17-          GAAGCTCAGACTCATTCAGAAGAAGGGCCTCTTGAACAGCTTCTTGTTCAAGAAATTCAA
JMFN038F06+           GAAGCTCAGACTCATTCAGAAGAAGGGCCTCTTGAACAGCTTCTTGTTCAAGAAATTCAA
                      ____________________________________________________________
consensus             GAAGCTCAGACTCATTCAGAAGAAGGGCCTCTTGAACAGCTTCTTGTTCAAGAAATTCAA
 
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JMFF051B07+           CGTAGGCATATCCCTTTGGTTGCCCAAACTTATTAGTACGGATAGTAACTCTATTTACAG
JMSF028N17+           CGTAGGCATATCCCTTTGGTTGCCCAAACTTATTAGTACGGATAGTAACTCTATTTACAG
rJMSF028N17-          CGTAGGCATATCCCTTTGGTTGCCCAAACTTATTAGTACGGATAGTAACTCTATTTACAG
JMFN038F06+           CGTAGGCATATCCCTTTGGTTGCCCAAACTTATTAGTACGGATAGTAACTCTATTTACAG
                      ____________________________________________________________
consensus             CGTAGGCATATCCCTTTGGTTGCCCAAACTTATTAGTACGGATAGTAACTCTATTTACAG
 
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JMFF051B07+           TACCGCATGCCTGGAAGTGCTGCTGCACTTCCTCAGGGGTGCATGAATAATCCACATTGC
JMSF028N17+           TACCGCATGCCTGGAAGTGCTGCTGCACTTCCTCAGGGGTGCATGAATAATCCACATTGC
rJMSF028N17-          TACCGCATGCCTGGAAGTGCTGCTGCACTTCCTCAGGGGTGCATGAATAATCCACATTGC
JMFN038F06+           TACCGCATGCCTGGAAGTGCTGCTGCACTTCCTCAGGGGTGCATGAATAATCCACATTGC
                      ____________________________________________________________
consensus             TACCGCATGCCTGGAAGTGCTGCTGCACTTCCTCAGGGGTGCATGAATAATCCACATTGC
 
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JMFF051B07+           CAACAAAGACGGAACGAGAATCGACTTCTTCCCTATTCGATTGGCTCGCAGCAGCAGAAG
JMSF028N17+           CAACAAAGACGGAACGAGAATCGACTTCTTCCCTATTCGATTGGCTCGCAGCAGCAGAAG
rJMSF028N17-          CAACAAAGACGGAACGAGAATCGACTTCTTCCCTATTCGATTGGCTCGCAGCAGCAGAAG
JMFN038F06+           CAACAAAGACGGAACGAGAATCGACTTCTTCCCTATTCGATTGGCTCGCAGCAGCAGAAG
                      ____________________________________________________________
consensus             CAACAAAGACGGAACGAGAATCGACTTCTTCCCTATTCGATTGGCTCGCAGCAGCAGAAG
 
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JMFF051B07+           AAGGGTCTGAAACAGCACCCATTTCCTTCTCAACTTTGGCCTGCATTTCGCGGAGCGCCG
JMSF028N17+           AAGGGTCTGAAACAGCACCCATTTCCTTCTCAACTTTGGCCTGCATTTCGCGGAGCGCCG
rJMSF028N17-          AAGGGTCTGAAACAGCACCCATTTCCTTCTCAACTTTGGCCTGCATTTCGCGGAGCGCCG
JMFN038F06+           AAGGGTCTGAAACAGCACCCATTTCCTTCTCAACTTTGGCCTGCATTTCGCGGAGCGCCG
                      ____________________________________________________________
consensus             AAGGGTCTGAAACAGCACCCATTTCCTTCTCAACTTTGGCCTGCATTTCGCGGAGCGCCG
 
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JMFF051B07+           CCGCCTCGTCTTCCATTTCCTTCAACCTCTTTTTCATCTCATCCAATTCCACGGCAGCTC
JMSF028N17+           CCGCCTCGTCTTCCATTTCCTTCAACCTCTTTTTCATCTCATCCAATTCCACGGCAGCTC
rJMSF028N17-          CCGCCTCGTCTTCCATTTCCTTCAACCTCTTTTTCATCTCATCCAATTCCACGGCAGCTC
JMFN038F06+           CCGCCTCGTCTTCCATTTCCTTCAACCTCTTTTTCATCTCATCCAATTCCACGGCAGCTC
                      ____________________________________________________________
consensus             CCGCCTCGTCTTCCATTTCCTTCAACCTCTTTTTCATCTCATCCAATTCCACGGCAGCTC
 
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JMFF051B07+           C                                                           
JMSF028N17+           C                                                           
rJMSF028N17-          CGGCCTCCGCCGCTGCGGCCATTTCCACGTCGTCGTCGCCGCCATCCATCGCGA      
JMFN038F06+           CGGCCTCCGCCGCTGCGGCCATTTCCACGTCGTCGTCGCCGCCATCCATCGCGACCTCCC
                      ____________________________________________________________
consensus             CGGCCTCCGCCGCTGCGGCCATTTCCACGTCGTCGTCGCCGCCATCCATCGCGACCTCCC