Contig 006148:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN001B09Sequence517006148 (3)ref|XP_004133771.1|3e-20PREDICTED: protein transport protein Sec61 subunit beta-like isoform 1 [Cucumis
JMFN012G11Sequence519006148 (3)ref|XP_004133771.1|3e-20PREDICTED: protein transport protein Sec61 subunit beta-like isoform 1 [Cucumis
JMFN030D17Sequence514006148 (3)ref|XP_004133771.1|3e-20PREDICTED: protein transport protein Sec61 subunit beta-like isoform 1 [Cucumis

Alignment

This contig is upended


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JMFN012G11+                   AATGTCTAAAAATTCATGACAGAATAGCAACACTAAGGTAACATGATTTTGA
JMFN001B09+                     TGTCTAAAAATTCATGACAGAATAGCAACACTAAGGTAACATGATTTTGA
JMFN030D17+                                     ACAGAATAGCAACACTAAGGTAACATGATTTTGA
                      ____________________________________________________________
consensus                     AATGTCTAAAAATTCATGACAGAATAGCAACACTAAGGTAACATGATTTTGA
 
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JMFN012G11+           GTCCCAAAACAAATGTAGCTGTTGGAAGATGAAAAGTAGTCACTCTATAATAACATCAGA
JMFN001B09+           GTCCCAAAATAAATGTAGCTGTTGGAAGATGAAAAGTAGTCACTCTATAATAACATCAGA
JMFN030D17+           GTCCCAAAACAAATGTAGCTGTTGGAAGATGAAAAGTAGTCACTCTATAATAACATCAGA
                      ____________________________________________________________
consensus             GTCCCAAAACAAATGTAGCTGTTGGAAGATGAAAAGTAGTCACTCTATAATAACATCAGA
 
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JMFN012G11+           TAAGATTGAATAGAAGCAAAAACAAAAAGCAGAGAGGGGAGGAGAAGGGCGTTTGTTGTT
JMFN001B09+           TAAGATTGAATAGAAGCAAAAACAAAAAGCAGAGAGGGGAGGAGAAGGGCGTTTGTTGTT
JMFN030D17+           TAAGATTGAATAGAAGCAAAAACAAAAAGCAGAGAGGGGAGGAGAAGGGCGTTTGTTGTT
                      ____________________________________________________________
consensus             TAAGATTGAATAGAAGCAAAAACAAAAAGCAGAGAGGGGAGGAGAAGGGCGTTTGTTGTT
 
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JMFN012G11+           AAAAAAGCTGAGTATTTTCTAGGCTTCTCTACGGAAGTACAATTTACCCATGACATGAAG
JMFN001B09+           AAAAAAGCTGAGTATTTTCTAGGCTTCTCTACGGAAGTACAATTTACCCATGACATGAAG
JMFN030D17+           AAAAAAGCTGAGTATTTTCTAGGCTTCTCTACGGAAGTACAATTTACCCATGACATGAAG
                      ____________________________________________________________
consensus             AAAAAAGCTGAGTATTTTCTAGGCTTCTCTACGGAAGTACAATTTACCCATGACATGAAG
 
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JMFN012G11+           AATAGCAACAAATGCTATGAAGCCAATGCTCATGACAAGCACAACATTGGGAGAAATCTT
JMFN001B09+           AATAGCAACAAATGCTATGAAGCCAATGCTCATGACAAGCACAACATTGGGAGAAATCTT
JMFN030D17+           AATAGCAACAAATGCTATGAAGCCAATGCTCATGACAAGCACAACATTGGGAGAAATCTT
                      ____________________________________________________________
consensus             AATAGCAACAAATGCTATGAAGCCAATGCTCATGACAAGCACAACATTGGGAGAAATCTT
 
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JMFN012G11+           CAATCCAGGAGCATCATCAGTGTAAAATTGGAGCATAGTACCACTGGCACCTCCTCCTCC
JMFN001B09+           CAATCCAGGAGCATCATCAGTGTAAAATTGGAGCATAGTACCACTGGCACCTCCTCCTCC
JMFN030D17+           CAATCCAGGAGCATCATCAGTGTAAAATTGGAGCATAGTACCACTGGCACCTCCTCCTCC
                      ____________________________________________________________
consensus             CAATCCAGGAGCATCATCAGTGTAAAATTGGAGCATAGTACCACTGGCACCTCCTCCTCC
 
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JMFN012G11+           AGCAGCACCACTCGCACCTCCTCCAGTCCTCCTGCGACGCATGTTGGCAGCTGCAGCTGC
JMFN001B09+           AGCAGCACCACTCGCACCTCCTCCAGTCCTCCTGCGACGCATGTTGGCAGCTGCAGCTGC
JMFN030D17+           AGCAGCACCACTCGCACCTCCTCCAGTCCTCCTGCGACGCATGTTGGCAGCTGCAGCTGC
                      ____________________________________________________________
consensus             AGCAGCACCACTCGCACCTCCTCCAGTCCTCCTGCGACGCATGTTGGCAGCTGCAGCTGC
 
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JMFN012G11+           GGCAGTTCCTCTTTGTGGACCACCTCCCAACGCCATTTCTTAA                 
JMFN001B09+           GGCAGTTCCTCTTTGTGGACCACCTCCCAACGCCATTTCTTAA                 
JMFN030D17+           GGCAGTTCCTCTTTGTGGACCACCTCCCAACGCCATTTCTTAAATCAAAAGAAATTCGAT
                      ____________________________________________________________
consensus             GGCAGTTCCTCTTTGTGGACCACCTCCCAACGCCATTTCTTAAATCAAAAGAAATTCGAT
 
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JMFN030D17+           TAGATCTCTCGTCGAATTAGACTTCTTCTGATCCGATCGCTGGATTGAAAAATCAAAATC
                      ____________________________________________________________
consensus             TAGATCTCTCGTCGAATTAGACTTCTTCTGATCCGATCGCTGGATTGAAAAATCAAAATC