Contig 006147:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN028M02Sequence549006147 (2)gb|ABK93854.1|3e-82unknown [Populus trichocarpa]
JMFS025D11Sequence462006147 (2)ref|XP_011021880.1|2e-19PREDICTED: kinesin-like protein KCA2 [Populus euphratica]

Alignment

This contig is upended


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JMFS025D11+                                 AGATCAACTCAGAGCATATCTTAGAATAATATTTAGAG
                      ____________________________________________________________
consensus                                   AGATCAACTCAGAGCATATCTTAGAATAATATTTAGAG
 
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JMFS025D11+           AGCAATGGAGTTTTACAAGAGCAGTATTGCCAGTATTATATACATAACAACATGCTACAT
                      ____________________________________________________________
consensus             AGCAATGGAGTTTTACAAGAGCAGTATTGCCAGTATTATATACATAACAACATGCTACAT
 
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JMFS025D11+           AACGTACCAAAACTGGAAATTGGTCACAAGGGCAACGACTGTAACCAAGATTACATTAAA
                      ____________________________________________________________
consensus             AACGTACCAAAACTGGAAATTGGTCACAAGGGCAACGACTGTAACCAAGATTACATTAAA
 
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JMFS025D11+           CCCCCCAGAGGTTACTTATCAATGTCCCAAACAAATAATGGCACAAGACGTGCAACATGG
JMFN028M02+                                                              GCAACATGG
                      ____________________________________________________________
consensus             CCCCCCAGAGGTTACTTATCAATGTCCCAAACAAATAATGGCACAAGACGTGCAACATGG
 
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JMFS025D11+           CAGATCTTCAAAGTTATACACACAAGCCGTGGAATTTAACAATACAAGGTGGTCAAACGC
JMFN028M02+           CAGATCTTCAAAGTTATACACACAAGCCGTGGAATTTAACAATACAAGGTGGTCAAACGC
                      ____________________________________________________________
consensus             CAGATCTTCAAAGTTATACACACAAGCCGTGGAATTTAACAATACAAGGTGGTCAAACGC
 
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JMFS025D11+           ACCTTATCGTTTCGTTTGCTCTTCAATACTTGCACTTACGATTTCATGTCCTTCAGCACT
JMFN028M02+           ACCTTATCGTTTCGTTTGCTCTTCAATACTTGCACTTACGATTTCATGTCCTTCAGCACT
                      ____________________________________________________________
consensus             ACCTTATCGTTTCGTTTGCTCTTCAATACTTGCACTTACGATTTCATGTCCTTCAGCACT
 
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JMFS025D11+           CCACCCTTCTCTAGCTCACTTATGAGGTCCCTCAATGCTGGAACCTTCATAGCAAGTGTC
JMFN028M02+           CCACCCTTCTCTAGCTCACTTATGAGGTCCCTCAATGCTGGAACCTTCATAGCAAGTGTC
                      ____________________________________________________________
consensus             CCACCCTTCTCTAGCTCACTTATGAGGTCCCTCAATGCTGGAACCTTCATAGCAAGTGTC
 
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JMFS025D11+           CTGTATAATCTAGAATACCTAGCTCGGGTTCCATCTGCTGTCCGAGCAAGTGCGAGAAGG
JMFN028M02+           CTGTATAATCTAGAATACCTAGCTCGGGTTCCATCTGCTGTCCGAGCAAGTGCGAGAAGG
                      ____________________________________________________________
consensus             CTGTATAATCTAGAATACCTAGCTCGGGTTCCATCTGCTGTCCGAGCAAGTGCGAGAAGG
 
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JMFS025D11+           CTTA                                                        
JMFN028M02+           CTTAGGGCCTCGGGAAGCTGTGTGAATAACTGCTTCATCTCCTCCAAGCTCATATTTTCA
                      ____________________________________________________________
consensus             CTTAGGGCCTCGGGAAGCTGTGTGAATAACTGCTTCATCTCCTCCAAGCTCATATTTTCA
 
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JMFN028M02+           AGAACAGTTGGTCTTGGAACAACTCTAACAATCTCACCCCCTTTGGGTTCTTGAACTCGG
                      ____________________________________________________________
consensus             AGAACAGTTGGTCTTGGAACAACTCTAACAATCTCACCCCCTTTGGGTTCTTGAACTCGG
 
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JMFN028M02+           GCATCAGCTTTGATGACCAGTTCAGAATTTGAGTTAGCTCCACATTTGATAATAAAAGGG
                      ____________________________________________________________
consensus             GCATCAGCTTTGATGACCAGTTCAGAATTTGAGTTAGCTCCACATTTGATAATAAAAGGG
 
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JMFN028M02+           GATGTTGAACCTGTGTTGAACTGTAGAACATTCCATTGCGCCACATCAGTTTCACCACCT
                      ____________________________________________________________
consensus             GATGTTGAACCTGTGTTGAACTGTAGAACATTCCATTGCGCCACATCAGTTTCACCACCT
 
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JMFN028M02+           GACCCCGCCGCATCTGCACTGTTCAGGGAAGCATTTACAGTGTCATGAAGCCGGTCATCT
                      ____________________________________________________________
consensus             GACCCCGCCGCATCTGCACTGTTCAGGGAAGCATTTACAGTGTCATGAAGCCGGTCATCT