Contig 006143:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019E09Sequence573013154 (8)emb|CDP02303.1|1e-59unnamed protein product [Coffea canephora]755006143 (7)ref|XP_009603901.1|7e-107PREDICTED: chaperone protein ClpB3, chloroplastic [Nicotiana tomentosiformis]
JMFF021B18Sequence334013154 (8)emb|CDP02303.1|2e-11unnamed protein product [Coffea canephora]712006143 (7)ref|XP_009603901.1|1e-92PREDICTED: chaperone protein ClpB3, chloroplastic [Nicotiana tomentosiformis]
JMFN019B01Sequence565006143 (7)ref|XP_009786473.1|4e-60PREDICTED: chaperone protein ClpB3, chloroplastic [Nicotiana sylvestris]
JMFS104H04Sequence605006143 (7)ref|XP_011085728.1|3e-122PREDICTED: chaperone protein ClpB3, chloroplastic isoform X2 [Sesamum indicum]
JMSF033J01Sequence688013154 (8)emb|CDP02303.1|2e-62unnamed protein product [Coffea canephora]744006143 (7)ref|XP_009603901.1|7e-86PREDICTED: chaperone protein ClpB3, chloroplastic [Nicotiana tomentosiformis]
JMSF036C24Sequence643013154 (8)emb|CDP02303.1|3e-48unnamed protein product [Coffea canephora]523006143 (7)gb|AAN17424.1|5e-79HSP100/ClpB, putative [Arabidopsis thaliana] gb|AAO00929.1| HSP100/ClpB, putativ
JMSF041O21Sequence547006143 (7)ref|NP_001234143.1|1e-62heat shock protein [Solanum lycopersicum] dbj|BAE06227.1| heat shock protein [So

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H04-                                        AGAAGCACTTGTGCGTATTGATATGAGTGAA
                      ____________________________________________________________
consensus                                          AGAAGCACTTGTGCGTATTGATATGAGTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H04-           TACATGGAAAAACACGCTGTCTCAAGGCTAATAGGAGCCCCTCCTGGTTACGTAGGATAC
                      ____________________________________________________________
consensus             TACATGGAAAAACACGCTGTCTCAAGGCTAATAGGAGCCCCTCCTGGTTACGTAGGATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H04-           GAGGAAGGAGGACAGTTGACCGAGACTGTTCGAAGGAGACCCTATGCGGTGATCTTATTC
                      ____________________________________________________________
consensus             GAGGAAGGAGGACAGTTGACCGAGACTGTTCGAAGGAGACCCTATGCGGTGATCTTATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H04-           GATGAAATAGAAAAGGCCCATGCAGATGTGTTCAATGTCTTCCTTCAAATCTTGGATGAT
rJMSF033J01+                                                                GATGAT
rJMFF019E09+                                                                GATGAT
                      ____________________________________________________________
consensus             GATGAAATAGAAAAGGCCCATGCAGATGTGTTCAATGTCTTCCTTCAAATCTTGGATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H04-           GGTAGGGTGACAGACTCACAGGGGCGCACAGTGAGCTTCACAAACACAGTCATCATTATG
rJMSF033J01+          GGTAGGGTGACAGACTCACANGGGCGCACAGTGAGCTTCACAAACACAGTCATCATTATG
rJMFF021B18+                                                        CAGTCATCATTATG
rJMFF019E09+          GGTAGGGTGACAGACTCCCAGGGGCGCACAGTGAGCTTCACAAACACAGTCATCATTATG
                      ____________________________________________________________
consensus             GGTAGGGTGACAGACTCACAGGGGCGCACAGTGAGCTTCACAAACACAGTCATCATTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H04-           ACATCAAATGTAGG-TTCGCAATATATTCTTAACACAATTGAAGATAACTTATCAAGCGA
rJMSF033J01+          ACATCAAATGTAGGTTTCGCAATATATTCTTAACACAATTGAAGATAACTTATCAAGCGA
rJMFF021B18+          ACATCAAATGTAGG-TTCGCAATATATTCTTAACACAATTGAAGATAACTTATCAAGCGA
rJMFF019E09+          ACATCAAATGTAGG-TTCGCAATATATTCTTAACACAATTGAAGATAACTTATCAAGCGA
                      ____________________________________________________________
consensus             ACATCAAATGTAGG-TTCGCAATATATTCTTAACACAATTGAAGATAACTTATCAAGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H04-           GGAATCTTATGAAACTATAAAGCGAAGGGTAATGGAGGCTGCAAGATCGATTTTCCGCCC
rJMSF036C24+                       ACTATAAAGCGAAGGGTAATGGAGGCTGCAAGATCGATTTTCCGCCC
rJMSF033J01+          GGAATCTTATGAAACTATAAAGCGAAGGGTAATGGAGGCTGCAAGATCGATTTTCCGCCC
rJMFF021B18+          GGAATCTTATGAAACTATAAAGCGAAGGGTAATGGAGGCTGCAAGATCGATTTTCCGCCC
rJMFF019E09+          GGAATCTTATGAAACTATAAAGCGAAGGGTAATGGAGGCTGCAAGATCGATTTTCCGCCC
                      ____________________________________________________________
consensus             GGAATCTTATGAAACTATAAAGCGAAGGGTAATGGAGGCTGCAAGATCGATTTTCCGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H04-           TGAATTCATGAATCGGGTTGATGAATACATAGTATTCCAGCCTCTTGACCGTGAGCAGAT
rJMSF036C24+          TGAATTCATGAATCGGGTTGATGAATACATAGTATTCCAGCCTCTTGACCGTGAGCAGAT
rJMSF041O21+              TTCATGAATCGGGNTGATGAATACATAGTATTCCAGCCTCTTGACCGTGAGCNGAT
rJMSF033J01+          TGAATTCATGAATCGGGTTGATGAATACATAGTATTCCAGCCTCTTGACCGTGAGCAGAT
rJMFF021B18+          TGAATTCATGAATCGGGTTGATGAATACATAGTATTCCAGCCTCTTGACCGTGAGCAGAT
rJMFF019E09+          TGAATTCATGAATCGGGTTGATGAATACATAGTATTCCAGCCTCTTGACCGTGAGCAGAT
JMFN019B01-                                             TTCCAGCCTCTTGACCGTGAGCAGAT
                      ____________________________________________________________
consensus             TGAATTCATGAATCGGGTTGATGAATACATAGTATTCCAGCCTCTTGACCGTGAGCAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H04-           TAACAGTATTGTCAGATTACAGTTGGCACGAGTGCAGCAGAGATTAGCTGACCGGAAAAT
rJMSF036C24+          TAACAGTATTGTCAGATTACAGTTGGCACGAGTGCAGCAGAGATTAGCTGACCGGAAAAT
rJMSF041O21+          TAACAGTATTGTCAGATTACAGTTGGCACGAGTGCAGCAGAGATTAGCTGACCGGAAAAT
rJMSF033J01+          TAACAGTATTGTCAGATTACAGTTGGCACGAGTGCAGCAGAGATTAGCTGACCGGAAAAT
rJMFF021B18+          TAACAGTATTGTCAGATTACAGTTGGCACGAGTGCAGCAGAGATTAGCTGACCGGAAAAT
rJMFF019E09+          TAACAGTATTGTCAGATTACAGTTGGCACGAGTGCAGCAGAGATTAGCTGACCGGAAAAT
JMFN019B01-           TAACAGTATTGTCAGATTACAGTTGGCACGAGTGCAGCAGAGATTAGCTGACCGGAAAAT
                      ____________________________________________________________
consensus             TAACAGTATTGTCAGATTACAGTTGGCACGAGTGCAGCAGAGATTAGCTGACCGGAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H04-           AAAGCTCCAAGTGAGCGATGCTGCAATTCAGCTGCTCGGAAATCTGGGTTACGATCCAAA
rJMSF036C24+          AAAGCTCCAAGTGAGCGATGCTGCAATTCAGCTGCTCGGAAATCTGGGTTACGATCCAAA
rJMSF041O21+          AAAGCTCCAAGTGAGCGATGCTGCAATTCAGCTGCTCGGAAATCTGGGTTACGATCCAAA
rJMSF033J01+          AAAGCTCCAAGTGAGCGATGCTGCAATTCAGCTGCTCGGAAATCTGGGTTACGATCCAAA
rJMFF021B18+          AAAGCTCCAAGTGAGCGATGCTGCAATTCAGCTGCTCGGAAATCTGGGTTACGATCCAAA
rJMFF019E09+          AAAGCTCCAAGTGAGCGATGCTGCAATTCAGCTGCTCGGAAATCTGGGTTACGATCCAAA
JMFN019B01-           AAAGCTCCAAGTGAGCGATGCTGCAATTCAGCTGCTCGGAAATCTGGGTTACGATCCAAA
                      ____________________________________________________________
consensus             AAAGCTCCAAGTGAGCGATGCTGCAATTCAGCTGCTCGGAAATCTGGGTTACGATCCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS104H04-           CTATGGTGCTAGGCCTGTGAAGAGGACGATTCAGC                         
rJMSF036C24+          CTATGGTGCTAGGCCTGTGAAGAGGACGATTCAGCAGAACGTGGAAAATGAGCTTGCCAA
rJMSF041O21+          CTATGGTGCTAGGCCTGTGAAGAGGACGATTCAGCAGAACGTGGAAAATGAGCTTGCCAN
rJMSF033J01+          CTATGGTGCTAGGCCTGTGAAGAGGACGATTCAGCAGAACGTGGAAAATGAGCTTGCCAA
rJMFF021B18+          CTATGGTGCTAGGCCTGTGAAGAGGACGATTCAGCAGAACGTGGAAAATGAGCTTGCCAA
rJMFF019E09+          CTATGGTGCTAGGCCTGTGAAGAGGACGATTCAGCAGAACGTGGAAAATGAGCTTGCCAA
JMFN019B01-           CTATGGTGCTAGGCCTGTGAAGAGGACGATTCAGCAGAACGTGGAAAATGAGCTTGCCAA
                      ____________________________________________________________
consensus             CTATGGTGCTAGGCCTGTGAAGAGGACGATTCAGCAGAACGTGGAAAATGAGCTTGCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036C24+          GGGCATCTTGAGAGGAGACTTCAGAGATGAGGATACTATTTTGGTAGACACTGAGCTCAC
rJMSF041O21+          GGGCNTCNTGAGAGGAGACTTCAGAGATGAGGATACTATTTTGGTAGACACTGAGCTCNC
rJMSF033J01+          GGGCATCTTGAGAGGAGACTTCAGAGATGAGGATACTATTTTGGTAGACACTGAGCTCAC
rJMFF021B18+          GGGCATCTTGAGAGGAGACTTCAGAGATGAGGATACTATTTTGGTAGACACTGAGCTCAC
rJMFF019E09+          GGGCATCTTGAGAGGAGACTTCAGAGATGAGGATACTATTTTGGTAGACACTGAGCTCAC
JMFN019B01-           GGGCATCTTGAGAGGAGACTTCAGAGATGAGGATACTATTTTGGTAGACACTGAGCTCAC
                      ____________________________________________________________
consensus             GGGCATCTTGAGAGGAGACTTCAGAGATGAGGATACTATTTTGGTAGACACTGAGCTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036C24+          AGCGTTTTCCAACGGACAGCTTCCCCAGCAAAAACTAGCTTTCAGAAGACTGGAATCTGG
rJMSF041O21+          AGCGTTTTCCAACGGACAGCTTCCCCAGCAAAAACTAGCTTTCAGAAGACTGGAATCTGG
rJMSF033J01+          AGCGTTTTCCAACGGACAGCTTCCCCAGCAAAAACTAGCTTTCAGAAGACTGGAATCTGG
rJMFF021B18+          AGCGTTTTCCAACGGACAGCTTCCCCAGCAAAAACTAGCTTTCAGAAGACTGGAATCTGG
rJMFF019E09+          AGCGTTTTCCAACGGACAGCTTCCCCAGCAAAAACTAGCTTTCAGAAGACTGGAATCTGG
JMFN019B01-           AGCGTTTTCCAACGGACAGCTTCCCCAGCAAAAACTAGCTTTCAGAAGACTGGAATCTGG
                      ____________________________________________________________
consensus             AGCGTTTTCCAACGGACAGCTTCCCCAGCAAAAACTAGCTTTCAGAAGACTGGAATCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036C24+          CTCCAGTGCTTCTGCTGAGAACCAAGAAGCATCTTTACAGACA-CAGTGATCATGTAAAA
rJMSF041O21+          CTCCAGTGCTTCTGNTGAGAACCAAGAAGCATCTTTACAGACATCAGTGATCATGTAAAA
rJMSF033J01+          CTCCAGTGCTTCTGCTGAGAACCAAGAAGCATCTTTACAGACA-CAGTGATCATGTAAAA
rJMFF021B18+          CTCCAGTGCTTCTGCTGAGAACCAAGAAGCATCTTTACAGACA-CAGTGATCATGTAAAA
rJMFF019E09+          CTCCAGTGCTTCTGCTGAGAACCAAGAAGCATCTTTACAGACA-CAGTGATCATGTAAAA
JMFN019B01-           CTCCAGTGCTTCTGCTGAGAACCAAGAAGCATCTTTACAGACA-CAGTGATCATGTAAAA
                      ____________________________________________________________
consensus             CTCCAGTGCTTCTGCTGAGAACCAAGAAGCATCTTTACAGACA-CAGTGATCATGTAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF036C24+          ATCTTTAGAGAGAGTTTTGAGCATGTTTGTATACGTAAATCTCCCATAC           
rJMSF041O21+          ATCTTTAGAGAGAGTTTTGAGCATGTTTGTATACGTAAATCTCCCATACAGTTTTTTGTT
rJMSF033J01+          ATCTTTAGAGAGAGTTTTGAGCATGTTTGTATACGTAAATCTCCCATACAGTTTTTTGTT
rJMFF021B18+          ATCTTTAGAGAGAGATTTGAGCATGTTTGTATACGTAAATCTCCCATACAGTTTTTTGTT
rJMFF019E09+          ATCTTTAGAGAGAGATTTGAGCATGTTTGTATACGTAAATCTCCCATACAGTTTTTTGTT
JMFN019B01-           ATCTTTAGAGAGAGTTTTGAGCATGTTTGTATACGTAAATCTCCCATACAGTTTTTTGTT
                      ____________________________________________________________
consensus             ATCTTTAGAGAGAGTTTTGAGCATGTTTGTATACGTAAATCTCCCATACAGTTTTTTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041O21+          CTATAACCTGCTTTAGACATGATGAAATCTCTNCCCATATGCCAATTTGAAACNTTCTGT
rJMSF033J01+          CTATAACCTGCTTTAGACATGATGAAATCTCTGCCCATATGCCAATTTGAAACATTCTGT
rJMFF021B18+          CTATAACCTGCTTTAGACATGATGAAATCTCTGCCCATATGCCAATTTGAAACATTCTGT
rJMFF019E09+          CTATAACCTGCTTTAGACATGATGAAATCTCTGCCCATATGCCAATTTGAAACATTCTGT
JMFN019B01-           CTATAACCTGCTTTAGACATGATGAAATCTCTGCCCATATGCCAATTTGAAACATTCTGT
                      ____________________________________________________________
consensus             CTATAACCTGCTTTAGACATGATGAAATCTCTGCCCATATGCCAATTTGAAACATTCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041O21+          AAAGGCA                                                     
rJMSF033J01+          AAAGGCAGTTAAGCTATTG                                         
rJMFF021B18+          AAAGGCAGTTAAGCTATTGTTTATACTG                                
rJMFF019E09+          AAAGGCAGTTAAGCTATTGTTTATACTG                                
JMFN019B01-           AAAGGCAGTTAAGCTATTGTTTATACTGTTCTTTAATGCAGTTTTGTTGATAGCTTTGAC
                      ____________________________________________________________
consensus             AAAGGCAGTTAAGCTATTGTTTATACTGTTCTTTAATGCAGTTTTGTTGATAGCTTTGAC