Contig 006141:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050E17Sequence600006141 (4)ref|XP_009596607.1|4e-57PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Nicotiana tomentosiformis571006141 (4)gb|KDP29121.1|1e-37hypothetical protein JCGZ_16510 [Jatropha curcas]
JMFN017D08Sequence608006141 (4)ref|XP_009596607.1|3e-58PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Nicotiana tomentosiformis
JMSF018H03Sequence221010641 (3)743006141 (4)ref|XP_004137828.1|8e-66PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis sativus] ref|X

Alignment

This contig is upended


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rJMSF018H03-                                                                   ATA
                      ____________________________________________________________
consensus                                                                      ATA
 
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rJMFF050E17-                                      TTGATCCAAGAATTTAGTTCTCTCTTAATCCA
rJMSF018H03-          CCACATTACCACCTAGAAAAAGAGCCCATTGATCCAAGAATTTAGTTCTCTCTTAATCCA
                      ____________________________________________________________
consensus             CCACATTACCACCTAGAAAAAGAGCCCATTGATCCAAGAATTTAGTTCTCTCTTAATCCA
 
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rJMFF050E17-          CCACAAGCAATAGGTGGCAGGTTACAAGTTGCATTGCCATTTTTACAGGCATACATTGTG
rJMSF018H03-          CCACAAGCAATAGGTGGCAGGTTACAAGTTGCATTGCCATTTTTACAGGCATACATTGTG
                      ____________________________________________________________
consensus             CCACAAGCAATAGGTGGCAGGTTACAAGTTGCATTGCCATTTTTACAGGCATACATTGTG
 
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rJMFF050E17-          ACAGAAATACATAGAGAGGGCTTTCAAATACATACGGTGTAGCTACGTAGCAGCTCTGCA
rJMSF018H03-          ACAGAAATACATAGAGAGGGCTTTCAAATACATACGGTGTAGCTACGTAGCAGCTCTGCA
                      ____________________________________________________________
consensus             ACAGAAATACATAGAGAGGGCTTTCAAATACATACGGTGTAGCTACGTAGCAGCTCTGCA
 
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rJMFF050E17-          AAATCAAGCCCTTCATGAGCATTGCTGCATTGTTGGGTCATCCGCATCTCTCGTCCAACC
rJMSF018H03-          AAATCAAGCCCTTCATGAGCATTGCTGCATTGTTGGGTCATCCGCATCTCTCGTCCAACC
                      ____________________________________________________________
consensus             AAATCAAGCCCTTCATGAGCATTGCTGCATTGTTGGGTCATCCGCATCTCTCGTCCAACC
 
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rJMFF050E17-          CTGGGTTCCCGCTCACTTGAATACTTGATATCAGGCATGGTTAGCAATCTCAGAACTGGC
rJMSF018H03-          CTGGGTTCCCGCTCACTTGAATACTTGATATCAGGCATGGTTAGCAATCTCAGAACTGGC
                      ____________________________________________________________
consensus             CTGGGTTCCCGCTCACTTGAATACTTGATATCAGGCATGGTTAGCAATCTCAGAACTGGC
 
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rJMFF050E17-          GCCTTGGAGGTCTTGATTCAGCAAGACTTACACCGATTTGCCTACCAATTAGGTTAACGC
rJMSF018H03-          GCCTTGGAGGTCTTGATTCAGCAAGACTTACACCGATTTGCCTACCAATTAGGTTAACGC
                      ____________________________________________________________
consensus             GCCTTGGAGGTCTTGATTCAGCAAGACTTACACCGATTTGCCTACCAATTAGGTTAACGC
 
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rJMFF050E17-          CATCCAACATTTTAATAGCATTGTTGGCCTCCTCAGCAGAACCGTAAGTTACAAATCCAA
rJMSF018H03-          CATCCAACATTTTAATAGCATTGTTGGCCTCCTCAGCAGAACCGTAAGTTACAAATCCAA
                      ____________________________________________________________
consensus             CATCCAACATTTTAATAGCATTGTTGGCCTCCTCAGCAGAACCGTAAGTTACAAATCCAA
 
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rJMFF050E17-          ATCCCCTCGACCTTCCACTCTCTCGGTCGTACACCACTCTTGCTTCCAACACCTTTCCTT
rJMSF018H03-          ATCCCCTCGACCTTCCACTCTCTCGGTCGTACACCACTCTTGCTTCCAACACCTTTCCTT
                      ____________________________________________________________
consensus             ATCCCCTCGACCTTCCACTCTCTCGGTCGTACACCACTCTTGCTTCCAACACCTTTCCTT
 
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rJMFF050E17-          GCTCACTGAATAAGGTTTCAAGCGCCTGATCATCAACACCCCAAGCAAGGTTTCCCACAT
rJMSF018H03-          GCTCACTGAATAAGGTTTCAAGCGCCTGATCATCAACACCCCAAGCAAGGTTTCCCACAT
                      ____________________________________________________________
consensus             GCTCACTGAATAAGGTTTCAAGCGCCTGATCATCAACACCCCAAGCAAGGTTTCCCACAT
 
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rJMFF050E17-          GGAGTTTGTGGCCTCGGTTGGCGTTGTCGAAACTTCTACCACCCCTTGC           
rJMSF018H03-          GGAGTTTGTGGCCTCGGTTGGCGTTGTCGAAACTTCTACCACCCCTTGCACCACCAAACG
                      ____________________________________________________________
consensus             GGAGTTTGTGGCCTCGGTTGGCGTTGTCGAAACTTCTACCACCCCTTGCACCACCAAACG
 
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rJMSF018H03-          TGGAATTTTCCCTCCTAGGTGGAGGTGGCCCAGAATTGACCTTCAATGCCCTCCCGTCAA
JMFF050E17+                 TTTCCCTCCTAGGTGGAGGTGGCCCAGAATTGACCTTCAATGCCCTCCCGTCAA
JMFN017D08+                 TTTCCCTCCTAGGTGGAGGTGGCCCAGAATTGACCTTCAATGCCCTCCCGTCAA
                      ____________________________________________________________
consensus             TGGAATTTTCCCTCCTAGGTGGAGGTGGCCCAGAATTGACCTTCAATGCCCTCCCGTCAA
 
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rJMSF018H03-          GTTCATATCCATTGAATTGTTGAGCGGCTAATTCAACTTCCTCCACAGTTGACATTGTCA
JMFF050E17+           GTTCATATCCATTGAATTGTTGAGCGGCTAATTCAACTTCCTCCACAGTTGACATTGTCA
JMFN017D08+           GTTCATATCCATTGAATTGTTGAGCGGCTAATTCAACTTCCTCCACAGTTGACATTGTCA
                      ____________________________________________________________
consensus             GTTCATATCCATTGAATTGTTGAGCGGCTAATTCAACTTCCTCCACAGTTGACATTGTCA
 
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rJMSF018H03-          CAAAGCCAAACCCTCTGCTT                                        
JMFF050E17+           CAAAGCCAAACCCTCTGCTTCTTCCTGTCTGTTTGTCATATATAACCTCGACCATCTCAA
JMFN017D08+           CAAAGCCAAACCCTCTGCTTCTTCCTGTCTGTTTGTCATATATAACCTCGACCATCTCAA
                      ____________________________________________________________
consensus             CAAAGCCAAACCCTCTGCTTCTTCCTGTCTGTTTGTCATATATAACCTCGACCATCTCAA
 
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JMFF050E17+           CATTTCCAGCTTGTTGAAACAGCCCAGCAAGAGCAGCGCTGTCGATATTGTACGGCAAAT
JMFN017D08+           CATTTCCAGCTTGTTGAAACAGCCCAGCAAGAGCAGCGCTGTCGATATTGTACGGCAAAT
                      ____________________________________________________________
consensus             CATTTCCAGCTTGTTGAAACAGCCCAGCAAGAGCAGCGCTGTCGATATTGTACGGCAAAT
 
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JMFF050E17+           TGCCCACGAAGAGCTTGAGCTCAGGAGAGAAACGGGGTTCGTCCGGGTACGAGGAACCGC
JMFN017D08+           TGCCCACGAAGAGCTTGAGCTCAGGAGAGAAACGGGGTTCGTCCGGGTACGAGGAACCGC
                      ____________________________________________________________
consensus             TGCCCACGAAGAGCTTGAGCTCAGGAGAGAAACGGGGTTCGTCCGGGTACGAGGAACCGC
 
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JMFF050E17+           CATCGCTGGGAACTCCCTCGTCCTCGTCTTCCACTTCTTCAATCTGGACGAATTCTGACG
JMFN017D08+           CATCGCTGGGAATTCCCTCGTCCTCGTCTTCCACTTCTTCAATCTGGTCGAATTCTGACG
                      ____________________________________________________________
consensus             CATCGCTGGGAATTCCCTCGTCCTCGTCTTCCACTTCTTCAATCTGGTCGAATTCTGACG
 
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JMFF050E17+           AAAGCGTGACGCCTCTGACGAAGCGTGACGCGAATGTGGAATCAAAGTGTCTAACTGAAA
JMFN017D08+           AAAGCGTGACGCCTCTGACGAAGCGTGACGCGAATGTGGAATCAAAGTGTCTAACTGAAA
                      ____________________________________________________________
consensus             AAAGCGTGACGCCTCTGACGAAGCGTGACGCGAATGTGGAATCAAAGTGTCTAACTGAAA
 
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JMFF050E17+           ATGTAAAAGGCGAAGAAGAAGAAGATAGTTTTAGAGCACGAGAAGATGACGGGAGAGAGA
JMFN017D08+           ATGTAAAAGGCGAAGAAGAAGAAGATAGTTTTAGAGCACGAGAAGATGACGGGAGAGAGA
                      ____________________________________________________________
consensus             ATGTAAAAGGCGAAGAAGAAGAAGATAGTTTTAGAGCACGAGAAGATGACGGGAGAGAGA
 
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JMFF050E17+           AAAGAGATAAAGAAGCGGCGGGTATGGCATTGGGTTTTGAAAAAGAAAGCGATTGAGGGG
JMFN017D08+           AAAGAGATAAAGAAGCGGCGGGTATGGCATTGGGTTTTGAAAAAGAAAGCGATTGAGGGG
                      ____________________________________________________________
consensus             AAAGAGATAAAGAAGCGGCGGGTATGGCATTGGGTTTTGAAAAAGAAAGCGATTGAGGGG
 
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JMFF050E17+           TTAGAGAGAGAAAATGGAGTGAAGTAGCTGAGGTTGCCATGGCCGCACA           
JMFN017D08+           TTAGAGAGAGAAAATGGAGTGAAGTAGCTGAGGTTGCCATGGCCGCACAGATAAGGTTCT
                      ____________________________________________________________
consensus             TTAGAGAGAGAAAATGGAGTGAAGTAGCTGAGGTTGCCATGGCCGCACAGATAAGGTTCT