Contig 006139:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN015G06Sequence624006139 (2)ref|XP_009797561.1|5e-100PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Nicotiana sylvestris]
JMSF027L02Sequence686010739 (5)ref|XP_006363611.1|9e-60PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum]694006139 (2)emb|CDP01866.1|4e-72unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF027L02+                                                  GATCCAGAAATCACACAAAC
                      ____________________________________________________________
consensus                                                     GATCCAGAAATCACACAAAC
 
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rJMSF027L02+          ATCTATATATCCTTCACCACAAAAATTGTTTGTTTTTAATTTTTTGTAATTTTTGGTAGT
                      ____________________________________________________________
consensus             ATCTATATATCCTTCACCACAAAAATTGTTTGTTTTTAATTTTTTGTAATTTTTGGTAGT
 
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rJMSF027L02+          CTCTCAGCTTAGCACACACACCAGCTGGAATAATGGCTTCCAGGAGGATTCTCAAGGAGC
JMFN015G06-                                               CTTCCAGGAGGATTCTCAAGGAGC
                      ____________________________________________________________
consensus             CTCTCAGCTTAGCACACACACCAGCTGGAATAATGGCTTCCAGGAGGATTCTCAAGGAGC
 
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rJMSF027L02+          TTAGAGATCTGCAAAGAGACCCTCCTACATCATGCAGTGCAGGACCAGTGGCTCAAGATA
JMFN015G06-           TTAGAGATCTGCAAAGAGACCCTCCTACATCATGCAGTGCAGGACCAGTGGCTCAAGATA
                      ____________________________________________________________
consensus             TTAGAGATCTGCAAAGAGACCCTCCTACATCATGCAGTGCAGGACCAGTGGCTCAAGATA
 
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rJMSF027L02+          TGTTTCATTGGCAAGCAACCATTATTGGTCCAAATGACAGTCCCTATTCTGGTGGTGTTT
JMFN015G06-           TGTTTCATTGGCAAGCAACCATTATTGGTCCAAATGACAGTCCCTATTCTGGTGGTGTTT
                      ____________________________________________________________
consensus             TGTTTCATTGGCAAGCAACCATTATTGGTCCAAATGACAGTCCCTATTCTGGTGGTGTTT
 
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rJMSF027L02+          TCCAAGTCACCATTCATTTCCCCCCTGATTA-CCCTTCAAACCTCCCAAGGTTGCCTTTA
JMFN015G06-           TCCAAGTCACCATTCATTTCCCCCCTGATTACCCCTTCAAACCTCCCAAGGTTGCCTTTA
                      ____________________________________________________________
consensus             TCCAAGTCACCATTCATTTCCCCCCTGATTACCCCTTCAAACCTCCCAAGGTTGCCTTTA
 
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rJMSF027L02+          GGACCAAAGTTTTTCATCCAAATATAAACAATAATGGAAACATCTGCTTGGATATCCTAA
JMFN015G06-           GGACCAAAGTTTTTCATCCAAATATAAACAATAATGGAAACATCTGCTTGGATATCCTAA
                      ____________________________________________________________
consensus             GGACCAAAGTTTTTCATCCAAATATAAACAATAATGGAAACATCTGCTTGGATATCCTAA
 
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rJMSF027L02+          AGGATCAATGGAGCCCAGCACTCACCATATCAAAGGTTTTGCTTTCAATATGTTCACTGC
JMFN015G06-           AGGATCAATGGAGCCCAGCACTCACCATATCAAAGGTTTTGCTTTCAATATGTTCACTGC
                      ____________________________________________________________
consensus             AGGATCAATGGAGCCCAGCACTCACCATATCAAAGGTTTTGCTTTCAATATGTTCACTGC
 
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rJMSF027L02+          TAACAGATCCAAATCCAGATGATCCATTGGTTCCAGAAATAGCTCACATGTACAAGACTG
JMFN015G06-           TAACAGATCCAAATCCAGATGATCCATTGGTTCCAGAAATAGCTCACATGTACAAGACTG
                      ____________________________________________________________
consensus             TAACAGATCCAAATCCAGATGATCCATTGGTTCCAGAAATAGCTCACATGTACAAGACTG
 
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rJMSF027L02+          ACAGATCCAAGTATGAAACCATGGCTCGTAGCTGGACTCAAAAGTACGCCATGAATTGAT
JMFN015G06-           ACAGATCCAAGTATGAAACCATGGCTCGTAGCTGGACTCAAAAGTACGCCATGAATTGAT
                      ____________________________________________________________
consensus             ACAGATCCAAGTATGAAACCATGGCTCGTAGCTGGACTCAAAAGTACGCCATGAATTGAT
 
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rJMSF027L02+          CTATCTGAGTATCATCCTAAGCAGATTAAGAAAAACGAGAGAATCAATCTCAAACATGTT
JMFN015G06-           CTATCTGAGTATCATCCTAAGCAGATTAAGAAAAACGAGAGAATCAATCTCAAACATGTT
                      ____________________________________________________________
consensus             CTATCTGAGTATCATCCTAAGCAGATTAAGAAAAACGAGAGAATCAATCTCAAACATGTT
 
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rJMSF027L02+          AAGTAGAAATTGGTTCTTAATTTTCATGGTTTGTGTCGTCGAATAATGACTTGTGGATGA
JMFN015G06-           AAGTAGAAATTGGTTCTTAATTTTCATGGTTTGTGTCGTCGAATAATGACTTGTGGATGA
                      ____________________________________________________________
consensus             AAGTAGAAATTGGTTCTTAATTTTCATGGTTTGTGTCGTCGAATAATGACTTGTGGATGA
 
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rJMSF027L02+          GTCAAC                                                      
JMFN015G06-           GTCAACACCTGAATCACTGGACAATTCTACTACTACTATTAGTGTAATACATATTTTTTC
                      ____________________________________________________________
consensus             GTCAACACCTGAATCACTGGACAATTCTACTACTACTATTAGTGTAATACATATTTTTTC