Contig 006135:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011O24Sequence601006135 (2)ref|XP_009775500.1|2e-90PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Nicotiana sylvestris
JMSF020D11Sequence692006135 (2)ref|XP_009625288.1|1e-88PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Nicotiana tomentosif444016089

Alignment

This contig is upended


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JMFN011O24+                                                                      A
                      ____________________________________________________________
consensus                                                                        A
 
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JMSF020D11+                CTCCGAGTCATAAGTGATGAATCCAAAACCTCTAGGCCGCTGTGTGTTGTGATCA
JMFN011O24+           GCTTCCTCCGAGTCATAAGTGATGAATCCAAAACCTCTAGGCCGCTGTGTGTTGTGATCA
                      ____________________________________________________________
consensus             GCTTCCTCCGAGTCATAAGTGATGAATCCAAAACCTCTAGGCCGCTGTGTGTTGTGATCA
 
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JMSF020D11+           TACATCACCACAACATCGGTGATTGTTCCAAATTGATCAAAATAACTCTTGAAGTCGCTC
JMFN011O24+           TACATCACCACAACATCGGTGATTGTTCCAAATTGATCAAAATAACTCTTGAAGTCGCTC
                      ____________________________________________________________
consensus             TACATCACCACAACATCGGTGATTGTTCCAAATTGATCAAAATAACTCTTGAAGTCGCTC
 
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JMSF020D11+           TCAGTCACTGAGGATGCCAAACCACCTACAAAAATCTTTTTTGTGCGTATGGAACTTTGT
JMFN011O24+           TCAGTCACTGAGGATGCCAAACCACCTACAAAAATCTTTTTTGTGCGTATGGAACTTTGT
                      ____________________________________________________________
consensus             TCAGTCACTGAGGATGCCAAACCACCTACAAAAATCTTTTTTGTGCGTATGGAACTTTGT
 
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JMSF020D11+           GGAGACTGTATAATTCCGTTGTTCCTATTCGGGGTGTGTTGATCTTCCCTAGGCACAGCC
JMFN011O24+           GGAGACTGTATAATTCCGTTGTTCCTATTCGGGGTGTGTTGATCTTCCCTAGGCACAGCC
                      ____________________________________________________________
consensus             GGAGACTGTATAATTCCGTTGTTCCTATTCGGGGTGTGTTGATCTTCCCTAGGCACAGCC
 
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JMSF020D11+           TTTTTTGCCTCTACAGTTCGACCATCGATCATGTGCTTTTCCTTAACAACTCTTTCAGCA
JMFN011O24+           TTTTTTGCCTCTACAGTTCGACCATCGATCATGTGCTTTTCCTTAACAACTCTTTCAGCA
                      ____________________________________________________________
consensus             TTTTTTGCCTCTACAGTTCGACCATCGATCATGTGCTTTTCCTTAACAACTCTTTCAGCA
 
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JMSF020D11+           ACAGAAGGATCAGCAAAAACAACAAAACCAAAACCGCGGGCACGTCCTGTGGTCCGATCT
JMFN011O24+           ACAGAAGGATCAGCAAAAACAACAAAACCAAAACCGCGGGCACGTCCTGTGGTCCGATCT
                      ____________________________________________________________
consensus             ACAGAAGGATCAGCAAAAACAACAAAACCAAAACCGCGGGCACGTCCTGTGGTCCGATCT
 
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JMSF020D11+           TTCATGATCACTGCCTCAACTACTTCACCAAATGTTTGGAAATAAGCTCTGAGACGCTCT
JMFN011O24+           TTCATGATCACTGCCTCAACTACTTCACCAAATGTTTGGAAATAAGCTCTGAGACGCTCT
                      ____________________________________________________________
consensus             TTCATGATCACTGCCTCAACTACTTCACCAAATGTTTGGAAATAAGCTCTGAGACGCTCT
 
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JMSF020D11+           TCAGTGGTGTCCCAGGAAATCCCACCAACAAACAATTTTCCAGGCTCCATTTCCATCAAA
JMFN011O24+           TCAGTGGTGTCCCAGGAAATCCCACCAACAAACAATTTTCCAGGCTCCATTTCCATCAAA
                      ____________________________________________________________
consensus             TCAGTGGTGTCCCAGGAAATCCCACCAACAAACAATTTTCCAGGCTCCATTTCCATCAAA
 
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JMSF020D11+           AGG                                                         
JMFN011O24+           AGGTGAAGGCCCAGATGAGAAATGGATAGAATTCAAGATCTGAAGAGAGGCATATATAAC
                      ____________________________________________________________
consensus             AGGTGAAGGCCCAGATGAGAAATGGATAGAATTCAAGATCTGAAGAGAGGCATATATAAC
 
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JMFN011O24+           GAGCAGAGGGCTGGAAAGGCCCTCTCTATTGCTCTCTCTTTCTTTGCTTTTTCTTCAAAA
                      ____________________________________________________________
consensus             GAGCAGAGGGCTGGAAAGGCCCTCTCTATTGCTCTCTCTTTCTTTGCTTTTTCTTCAAAA