Contig 006129:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014B15Sequence505000500 (3)gb|AAC23542.1|4e-78receptor protein kinase [Ipomoea trifida]625006129 (3)gb|AAC23542.1|3e-78receptor protein kinase [Ipomoea trifida]
JMFN009E16Sequence632006129 (3)gb|AAC23542.1|2e-58receptor protein kinase [Ipomoea trifida]
JMFS138E05Sequence351006129 (3)gb|AAC23542.1|4e-15receptor protein kinase [Ipomoea trifida]

Alignment

This contig is upended


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JMFS138E05+                       GAAATTCCAAAATTGAAATACATCTAAATTCATTTAAAGCTCGGATGA
rJMFF014B15-                                           ATCTAAATTCATTTAAAGCTCGGATGA
JMFN009E16+                                            ATCTAAATTCATTTAAAGCTCGGATGA
                      ____________________________________________________________
consensus                         GAAATTCCAAAATTGAAATACATCTAAATTCATTTAAAGCTCGGATGA
 
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JMFS138E05+           TAGATGATACAATATAATTTACAACAAATGTCAAGGACATGAAAAAGAAAGGAAGCCAAT
rJMFF014B15-          TAGATGATACAATATAATTTACAACAAATGTCAAGGACATGAAAAAGAAAGGAAGCCAAT
JMFN009E16+           TAGATGATACAATATAATTTACAACAAATGTCAAGGACATGAAAAAGAAAGGAAGCCAAT
                      ____________________________________________________________
consensus             TAGATGATACAATATAATTTACAACAAATGTCAAGGACATGAAAAAGAAAGGAAGCCAAT
 
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JMFS138E05+           AGTTACCAAAAAAAAAAGAGTCAATAGTCTTCTGGAAGATGTAGATATGAAAGAAAATTT
rJMFF014B15-          AGTTACC-AAAAAAAAAGAGTCAATAGTCTTCTGGAAGATGTAGATATGAAAGAAAATTT
JMFN009E16+           AGTTACCAAAAAAAAAAGAGTCAATAGTCTTCTGGAAGATGTAGATATGAAAGAAAATTT
                      ____________________________________________________________
consensus             AGTTACCAAAAAAAAAAGAGTCAATAGTCTTCTGGAAGATGTAGATATGAAAGAAAATTT
 
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JMFS138E05+           GTTGGCTTCTTGAGCTATACAATTATGCAAGTGATGTCTCTCTCACCTTCAACTAGCGCC
rJMFF014B15-          GTTGGCTTCTTGAGCTATACAATTATGCAAGTGATGTCTCTCTCACCTTCAACTAGCGCC
JMFN009E16+           GTTGGCTTCTTGAGCTATACAATTATGCAAGTGATGTCTCTCTCACCTTCAACTAGCGCC
                      ____________________________________________________________
consensus             GTTGGCTTCTTGAGCTATACAATTATGCAAGTGATGTCTCTCTCACCTTCAACTAGCGCC
 
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JMFS138E05+           CGTCAAGCATGGTGACTGTAACTTGATTTACGGTGCAAGATTCGTCGTAATTACTGGTGG
rJMFF014B15-          CGTCAAGCATGGTGACTGTAACTTGATTTACGGTGCAAGATTCGTCGTAATTACTGGTGG
JMFN009E16+           CGTCAAGCATGGTGACTGTAACTTGATTTACGGTGCAAGATTCGTCGTAATTACTGGTGG
                      ____________________________________________________________
consensus             CGTCAAGCATGGTGACTGTAACTTGATTTACGGTGCAAGATTCGTCGTAATTACTGGTGG
 
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JMFS138E05+           ATGAATCCGCATCTGCAGGCCTACTTCCCAGACAGAACCCCGGGTGTTTA          
rJMFF014B15-          ATGAATCCGCATCTGCAGGCCTACTTCCCAGACAGAACCCCGGGTGTTTAGGCTGGGGAA
JMFN009E16+           ATGAATCCGCATCTGCAGGCCTACTTCCCAGACAGAACCCCGGGTGTTTAGGCTGGGGAA
                      ____________________________________________________________
consensus             ATGAATCCGCATCTGCAGGCCTACTTCCCAGACAGAACCCCGGGTGTTTAGGCTGGGGAA
 
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rJMFF014B15-          GCGTTGCACTTTCGCTGCCCAACATTAAGACCACAGTTGCCATGTTTGGTCTGTCTTCTG
JMFN009E16+           GCGTTGCACTTTCGCTGCCCAACATTAAGACCACAGTTGCCATGTTTGGTCTGTCTTCTG
                      ____________________________________________________________
consensus             GCGTTGCACTTTCGCTGCCCAACATTAAGACCACAGTTGCCATGTTTGGTCTGTCTTCTG
 
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rJMFF014B15-          CCTGTTCTTGGACACACAACAAACCAACTTGAATGCATCTCATTACTTCACATGGGGAGT
JMFN009E16+           CCTGTTCTTGGACACACAACAAACCAACTTGAATGCATCTCATTACTTCACATGGGGAGT
                      ____________________________________________________________
consensus             CCTGTTCTTGGACACACAACAAACCAACTTGAATGCATCTCATTACTTCACATGGGGAGT
 
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rJMFF014B15-          ATGATTCTCCTATGGCTGAATCCAGTAGCTCTGAGCCTCTTCTTTCTCTCCATAGCCTCC
JMFN009E16+           ATGATTCTCCTATGGCTGAATCCAGTAGCTCTGAGCCTCTTCTTTCTCTCCATAGCCTCC
                      ____________________________________________________________
consensus             ATGATTCTCCTATGGCTGAATCCAGTAGCTCTGAGCCTCTTCTTTCTCTCCATAGCCTCC
 
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rJMFF014B15-          AAGC                                                        
JMFN009E16+           AAGCCTGCAGAACCCAAATTAAAGTTACATTCTTTATGGTAAAGAGAAGAGCTTGTTAGT
                      ____________________________________________________________
consensus             AAGCCTGCAGAACCCAAATTAAAGTTACATTCTTTATGGTAAAGAGAAGAGCTTGTTAGT
 
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JMFN009E16+           GATGCACTTACATGTCCAAGAAGGTTCTGCTGGTTGTTTTGGTTATAGAATCCTCGGTTC
                      ____________________________________________________________
consensus             GATGCACTTACATGTCCAAGAAGGTTCTGCTGGTTGTTTTGGTTATAGAATCCTCGGTTC