| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009N08 | Sequence | 576 | 006125 (11) | gb|ABQ42002.1| | 2e-47 | gibberellin induced protein [Sonneratia caseolaris] | 635 | 006125 (11) | gb|ABQ42002.1| | 2e-47 | gibberellin induced protein [Sonneratia caseolaris] |
| JMFF027F16 | Sequence | 578 | 006125 (11) | gb|ABQ42002.1| | 2e-47 | gibberellin induced protein [Sonneratia caseolaris] | 621 | 006125 (11) | gb|ABQ42002.1| | 4e-47 | gibberellin induced protein [Sonneratia caseolaris] |
| JMFN007F06 | Sequence | 619 | 006125 (11) | gb|ABQ42002.1| | 3e-47 | gibberellin induced protein [Sonneratia caseolaris] | |||||
| JMFN015D15 | Sequence | 630 | 006125 (11) | gb|KDP22135.1| | 2e-44 | hypothetical protein JCGZ_25966 [Jatropha curcas] | |||||
| JMFN015G22 | Sequence | 414 | 006125 (11) | emb|CDP14204.1| | 1e-30 | unnamed protein product [Coffea canephora] | |||||
| JMFN017J19 | Sequence | 604 | 006125 (11) | gb|ABQ42002.1| | 1e-46 | gibberellin induced protein [Sonneratia caseolaris] | |||||
| JMFN019L20 | Sequence | 448 | 006125 (11) | ref|XP_008240742.1| | 4e-43 | PREDICTED: protein GAST1 [Prunus mume] | |||||
| JMFN035B09 | Sequence | 513 | 006125 (11) | emb|CDP14204.1| | 1e-32 | unnamed protein product [Coffea canephora] | |||||
| JMFN037F17 | Sequence | 602 | 006125 (11) | gb|ABQ42002.1| | 5e-47 | gibberellin induced protein [Sonneratia caseolaris] | |||||
This contig is upended
. : . : . : . : . : . :
JMFN035B09+ AATAAACTTTTAATTACTATGAAGAGATAGATATGTTAC
JMFN015D15+ ACTATGGAGAGATAGATATGTTAC
____________________________________________________________
consensus AATAAACTTTTAATTACTATGGAGAGATAGATATGTTAC
. : . : . : . : . : . :
JMFN035B09+ TAAATATTGATAAATTTAAGTACAAGCACATACAATAACTCAACTTAAATTAAAATCTAA
JMFN015D15+ TAAATATTGATAAATTTAAGTACAAGCACATACAATAACTCAACTTAAATTAAAATCTAA
JMFN017J19+ AATTTAAATNTAA
____________________________________________________________
consensus TAAATATTGATAAATTTAAGTACAAGCACATACAATAACTCAACTTAAATTAAAATCTAA
. : . : . : . : . : . :
JMFN035B09+ AAAACGGATCAGATTCGATGATATTCTTAGATCATTTTCTTCGACCTCTAGTCTACTAAG
JMFN015D15+ AAAACGGATCAGATTCGATGATATTCTTAGATCATTTTCTTCGACCTCTAGTCTACTAAG
JMFN017J19+ AAAACGGATCAGATTCGATGATATTCTTAGATCATTTTCTTCGACCTCTAGTCTACTAAG
JMFN037F17+ ATCAGATTCGATGATATTCTTAGATCA-TTTCTTCGACCTCTAGTCTATTAAG
JMFF027F16+ ACTAAG
JMFN015G22+ TCTTAGATCATTTTCTTCGACCTCTAGTCTACTAAG
rJMFF027F16- GATTCGATGATATTCTTAGATCATTTTCTTCGACCTCTAGTCTACTAAG
JMFF009N08+ TAAG
rJMFF009N08- GATTCGATGATATTCTTAGATCATTTTCTTCGACCTCTAGTCTACTAAG
____________________________________________________________
consensus AAAACGGATCAGATTCGATGATATTCTTAGATCATTTTCTTCGACCTCTAGTCTACTAAG
. : . : . : . : . : . :
JMFN035B09+ GGAAATACTATAATAATAATTATTTTCCCCATAATATATGAGAGAGGGATCGGAGGTGGA
JMFN015D15+ GGAAATACTATAATAATAATTATTTTCCCCATAATATATGAGAGAGGGATCGGAGGTGGA
JMFN017J19+ GGAAATACTATAATAATAATTATTTTCCCCATAATATATGAGAGAGGGATCGGAGGTGGA
JMFN037F17+ GGAAATACTATAATAATAATTATTTTCCCCATAATATATGAGAGAGGGATCGGAGGTGGA
JMFF027F16+ GGAAATACTATAATAATAATTATTTTCCCCATAATATATGAGAGAGGGATCGGAGGTGGA
JMFN015G22+ GGAAATGCTATAATAATAATTATTTTCCCCATAATGTATGAGAGAGGGATCGGAGGTGGA
rJMFF027F16- GGAAATACTATAATAATAATTATTTTCCCCATAATATATGAGAGAGGGATCGGAGGTGGA
JMFF009N08+ GGAAATACTATAATAATAATTATTTTCCCCATAATATATGAGAGAGGGATCGGAGGTGGA
rJMFF009N08- GGAAATACTATAATAATAATTATTTTCCCCATAATATATGAGAGAGGGATCGGAGGTGGA
____________________________________________________________
consensus GGAAATACTATAATAATAATTATTTTCCCCATAATATATGAGAGAGGGATCGGAGGTGGA
. : . : . : . : . : . :
JMFN035B09+ TAATGATCCCATCCGTTTTTCTTAACAAAATACTTATAATAATATATAAATTTTAAAAAA
JMFN015D15+ TAATGATCCCATCCGTTTTTCTTAACAAAATACTTATAATAATATATAAATTTTAAAAAA
JMFN017J19+ TAATGATCCCATCCGTTTTTCTTAACAAAATACTTATAATAATATATAAATTTTAAAAAA
JMFN037F17+ TAATGATCCCATCCGTTTTTCTTAACAAAATACTTATAATAATATATAAATTTTAAAAAA
JMFF027F16+ TAATGATCCCATCCGTTTTTCTTAACAAAATACTTATAATAATATATAAATTTTAAAAAA
JMFN015G22+ TAATGATCCCATCCGTTTTTCTTAACAAAATACTTATAATAATATATAAATTTTAAAAAA
rJMFF027F16- TAATGATCCCATCCGTTTTTCTTAACAAAATACTTATAATAATATATAAATTTTAAAAAA
JMFN019L20+ TAAAAAA
JMFF009N08+ TAATGATCCCATCCGTTTTTCTTAACAAAATACTTATAATAATATATAAATTTTAAAAAA
rJMFF009N08- TAATGATCCCATCCGTTTTTCTTAACAAAATACTTATAATAATATATAAATTTTAAAAAA
JMFN007F06+ ATATATAAATTTTAAAAAA
____________________________________________________________
consensus TAATGATCCCATCCGTTTTTCTTAACAAAATACTTATAATAATATATAAATTTTAAAAAA
. : . : . : . : . : . :
JMFN035B09+ ATATGTTGTTAATTAATTGGTGGTGAAATAGATATATAATTAAGGGCATTTGGGGCCTCC
JMFN015D15+ ATATGTTGTTAATTAATTGGTGGTGAAATAGATATATAATTAAGGGCATTTGGGGTCTCC
JMFN017J19+ ATATGTTGTTAATTAATTGGTGGTGAAATAGATATATAATTAAGGGCATTTGGGGCCTCC
JMFN037F17+ ATATGTTGTTAATTAATTGGTGGTGAAATAGATATATAATTAAGGGCATTTGGGGCCTCC
JMFF027F16+ ATATGTTGTTAATTAATTGGTGGTGAAATAGATATATAATTAAGGGCATTTGGGGCCTCC
JMFN015G22+ ATATGTTGTTAATTAATTGGTGGTGAAATAGATATATAATTAAGGGCATTTGGGGCCTCC
rJMFF027F16- ATATGTTGTTAATTAATTGGTGGTGAAATAGATATATAATTAAGGGCATTTGGGGCCTCC
JMFN019L20+ ATATGTTGTTAATTGATTGGGGGTGAAATAGATATATAATTAAGGGCGTTTGGGGCCTCC
JMFF009N08+ ATATGTTGTTAATTAATTGGTGGTGAAATAGATATATAATTAAGGGCATTTGGGGCCTCC
rJMFF009N08- ATATGTTGTTAATTAATTGGTGGTGAAATAGATATATAATTAAGGGCATTTGGGGCCTCC
JMFN007F06+ NTATGTTGTTAATTAATTGGTGGTGAAATAGATATATAATTAAGGGCATTTGGGGCCTCC
____________________________________________________________
consensus ATATGTTGTTAATTAATTGGTGGTGAAATAGATATATAATTAAGGGCATTTGGGGCCTCC
. : . : . : . : . : . :
JMFN035B09+ TCTCTTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
JMFN015D15+ TCTCTTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
JMFN017J19+ TCTCTTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
JMFN037F17+ TCTCTTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
JMFF027F16+ TCTCTTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
JMFN015G22+ TCTCTTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
rJMFF027F16- TCTCTTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
JMFN019L20+ TCTCGTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
JMFF009N08+ TCTCTTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
rJMFF009N08- TCTCTTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
JMFN007F06+ TCTCTTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
____________________________________________________________
consensus TCTCTTGGTCTTCCAGTTATTGTAGCAGGGGCAAACTTGTTTGTTGCCGTAAGTCCCCGG
. : . : . : . : . : . :
JMFN035B09+ CGGCACACACAGACACTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
JMFN015D15+ CGGCACACACAGACACTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
JMFN017J19+ CGGCACACACAGACACTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
JMFN037F17+ CGGCACACACAGACACTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
JMFF027F16+ CGGCACACACAGACACTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
JMFN015G22+ CGGCACACACAGACACTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
rJMFF027F16- CGGCACACACAGACACTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
JMFN019L20+ GGGCACACACAGACGCTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
JMFF009N08+ CGGCACACACAGACACTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
rJMFF009N08- CGGCACACACAGACACTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
JMFN007F06+ CGGCACACACAGACACTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
____________________________________________________________
consensus CGGCACACACAGACACTTGGCGCAGCACTTTTGGCAGAAGAACAAACACGGCTTCTTGAA
. : . : . : . : . : . :
JMFN035B09+ CGCCGTCTTCGAGCACCGGAAACTGCACTTCGGCGAGCACTCTTGAGGACGCAG
JMFN015D15+ CGCCGTCTTCGAGCACCGGAAACTGCACTTCGGCGAGCACTCTTGAGGACGCAGGCTGCC
JMFN017J19+ CGCCGTCTTCGAGCACCGGAAACTGCAGTTCGGCGAGCACTCTTGAGGACGCAGGCTGCC
JMFN037F17+ CGCCGTCTTCGAGCACCGGAAACTGCACTTCGGCGAGCACTCTTGAGGACGCAGGCTGCC
JMFF027F16+ CGCCGTCTTCGAGCACCGGAAACTGCACTTCGGCGAGCACTCTTGAGGACGCAGGCTGCC
JMFN015G22+ CGCCGTCTTCGAGCACCGGAAACTGCACTTCGGCGAGCACTCTT
rJMFF027F16- CGCCGTCTTCGAGCACCGGAAACTGCACTTCGGCGAGCACTCTTGAGGACGCAGGCTGCC
JMFN019L20+ CGCCGTCTTCGAGCACCGGAAACTGCACTTCGGCGAGCACTCTTGAGGACGCAGGCTGCC
JMFF009N08+ CGCCGTCTTCGAGCACCGGAAACTGCACTTCGGCGAGCACTCTTGAGGACGCAGGCTGCC
rJMFF009N08- CGCCGTCTTCGAGCACCGGAAACTGCACTTCGGCGAGCACTCTTGAGGACGCAGGCTGCC
JMFN007F06+ CGCCGTCTTCGAGCACCGGAAACTGCACTTCGGCGAGCACTCTTGAGGACGCAGGCTGCC
____________________________________________________________
consensus CGCCGTCTTCGAGCACCGGAAACTGCACTTCGGCGAGCACTCTTGAGGACGCAGGCTGCC
. : . : . : . : . : . :
JMFN015D15+ TTCAGTCACACCATACATGCGGTTGTTACCCAGTGGCTGCGGGGTAGATGAATGTGCAGC
JMFN017J19+ TTCAGTCACACCATACATGCGGTTGTTACCCAGTGGCTGCGGGGTAGATGAATGTGCAGC
JMFN037F17+ TTCAGTCACACCATACATGCGGTTGTTACCCAGTGGCTGCGGGGTAGATGAATGTGCAGC
JMFF027F16+ TTCAGTCACACCATACATGCGGTTGTTACCCAGTGGCTGCGGGGTAGATGAATGTGCAGC
rJMFF027F16- TTCAGTCACACCATACATGCGGTTGTTACCCAGTGGCTGCGGGGTAGATGAATGTGCAGC
JMFN019L20+ TTCAGTCACACCAGACATGCGGTTGTTACCCAGTGGCTGCGGGGTAGATGAATGTGCAGC
JMFF009N08+ TTCAGTCACACCATACATGCGGTTGTTACCCAGTGGCTGCGGGGTAGATGAATGTGCAGC
rJMFF009N08- TTCAGTCACACCATACATGCGGTTGTTACCCAGTGGCTGCGGGGTAGATGAATGTGCAGC
JMFN007F06+ TTCAGTCACACCATACATGCGGTTGTTACCCAGTGGCTGCGGGGTAGATGAATGTGCAGC
____________________________________________________________
consensus TTCAGTCACACCATACATGCGGTTGTTACCCAGTGGCTGCGGGGTAGATGAATGTGCAGC
. : . : . : . : . : . :
JMFN015D15+ CATTGAAGCCTGATTCTGAAACATAATAACAAAGATGAAGATTGAGAACTTGAGGATGGT
JMFN017J19+ CATTGAAGCCTGATTCTGAAACATAATAACAAAGATGAAGATTGAGAACTTGAGGATGGT
JMFN037F17+ CATTGAAGCCTGATTCTGAAACATAATAACAAAGATGAAGATTGAGAACTTGAGGATGGT
JMFF027F16+ CATTGAAGCCTGATTCTGAAACATAATAACAAAGATGAAGATTGAGAACTTGAGGATGGT
rJMFF027F16- CATTGAAGCCTGATTCTGAAACATAATAACAAAGATGAAGATTGAGAACTTGAGGATGGT
JMFN019L20+ CATTGAAGCCTGATTCTGAAACATAATAACAAAGATGAAGATTGAGAACTTGAGGATGGT
JMFF009N08+ CATTGAAGCCTGATTCTGAAACATAATAACAAAGATGAAGATTGAGAACTTGAGGATGGT
rJMFF009N08- CATTGAAGCCTGATTCTGAAACATAATAACAAAGATGAAGATTGAGAACTTGAGGATGGT
JMFN007F06+ CATTGAAGCCTGATTCTGAAACATAATAACAAAGATGAAGATTGAGAACTTGAGGATGGT
____________________________________________________________
consensus CATTGAAGCCTGATTCTGAAACATAATAACAAAGATGAAGATTGAGAACTTGAGGATGGT
. : . : . : . : . : . :
JMFN015D15+ GAGCA
JMFN017J19+ GAGCATTGTAGCCATTTTTGCCATGCTTGAGAGAAAGAAAGAAACACAGAG
JMFN037F17+ GAGCATTGTAGCCATTTTTGCCATGCTTGAGAGAAAGAAAGAAACACAGAGGAATTGAAT
JMFF027F16+ GAGCATTGTAGCCATTTTTGCCATGCTTGAGAGAAAGAAAGAAACACAGAGGAATTGAAT
rJMFF027F16- GAGCATTGTAGCCATTTTTGCCATGCTTGAGAGAAAGAAAGAAACACAGAGGAATTGAAT
JMFN019L20+ GAGCATTGTAGCCATTTTTGCCATGCTTGAGAGAAAGAAAGAAACACAGAGGAATTGAAT
JMFF009N08+ GAGCATTGTAGCCATTTTTGCCATGCTTGAGAGAAAGAAAGAAACACAGAGGAATTGAAT
rJMFF009N08- GAGCATTGTAGCCATTTTTGCCATGCTTGAGAGAAAGAAAGAAACACAGAGGAATTGAAT
JMFN007F06+ GAGCATTGTAGCCATTTTTGCCATGCTTGAGAGAAAGAAAGAAACACAGAGGAATTGAAT
____________________________________________________________
consensus GAGCATTGTAGCCATTTTTGCCATGCTTGAGAGAAAGAAAGAAACACAGAGGAATTGAAT
. : . : . : . : . : . :
JMFN037F17+ GATGAGAAGG
JMFF027F16+ GATGAGAAGGGATATATAGAGAGAATTTGTGT
rJMFF027F16- GATGAGAAGGGATATATAGAGAGAATTTGTGT
JMFN019L20+ GATGAGAAGGGAT
JMFF009N08+ GATGAGAAGGGATATATAGAGAGAATTTGTGT
rJMFF009N08- GATGAGAAGGGATATATAGAGAGAATTTGTGT
JMFN007F06+ GATGAGAAGGGATATATAGAGAGAATTTGTGTGGAGTTGAAAAGGGAAGAGGATGGGATA
____________________________________________________________
consensus GATGAGAAGGGATATATAGAGAGAATTTGTGTGGAGTTGAAAAGGGAAGAGGATGGGATA
. : . : . : . : . : . :
JMFN007F06+ TTTATACATATAAAAAGGGAGAGGGAGATCAGAGTGGTAACTAGCTAGGGTCTACATTTG
____________________________________________________________
consensus TTTATACATATAAAAAGGGAGAGGGAGATCAGAGTGGTAACTAGCTAGGGTCTACATTTG
. : . : . : . : . : . :
JMFN007F06+ CACTATCCACTCTCAAGTGGATACTAAATTCATCACCAACTAATGTCTATCAAGTAACAA
____________________________________________________________
consensus CACTATCCACTCTCAAGTGGATACTAAATTCATCACCAACTAATGTCTATCAAGTAACAA