Contig 006123:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN004B02Sequence624006123 (6)
JMFN006B17Sequence619006123 (6)
JMFN006K23Sequence627006123 (6)
JMFN017E01Sequence619006123 (6)
JMFN032A11Sequence625006123 (6)
JMFS040H12Sequence627006123 (6)

Alignment

This contig is upended


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JMFN032A11+                                            ACAAGAAAAACCGTACCACCACTATCT
JMFN017E01+                                                  AAAACCGTACCACCACTATCT
JMFN006B17+                                                 AAAAACCGTACCACCACTATCT
JMFS040H12+                                                              CCACTATCT
JMFN006K23+                                            ACAAGAAAAACCGTACCACCACTATCT
                      ____________________________________________________________
consensus                                              ACAAGAAAAACCGTACCACCACTATCT
 
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JMFN032A11+           CAGAATACAATCTTGACTTCAAATATAGAAATCTTATGATGTTTCACATTAAATATAATA
JMFN017E01+           CAGAATACAATCTTGACTTCAAATATAGAAATCTTATGATGTTTCACATTAAATATAATA
JMFN006B17+           CAGAATACAATCTTGACTTCAAATATAGAAATCTTATGATGTTTCACATTAAATATAATA
JMFS040H12+           CAGAATACAATCTTGACTTCAAATATAGAAATCTTATGATGTTTCACATTAAATATAATA
JMFN006K23+           CAGAATACAATCTTGACTTCAAATATAGAAATCTTATGATGTTTCACATTAAATATAATA
                      ____________________________________________________________
consensus             CAGAATACAATCTTGACTTCAAATATAGAAATCTTATGATGTTTCACATTAAATATAATA
 
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JMFN032A11+           GATTGCTTTATTATTATTCCCATCCTTAATTAAGTTGTTTTTTCCTCATCCTTAACTAGC
JMFN017E01+           GATTGCTTTATTATTATTCCCATCCTTAATTAAGTTGTTTTTTCCTCATCCTTAACTAGC
JMFN004B02+                                                 TTTTTCCTCATCCTTAACTAGC
JMFN006B17+           GATTGCTTTATTATTATTCCCATCCTTAATTAAGTTG-TTTTTCCTCATCCTTAACTAGC
JMFS040H12+           GATTGCTTTATTATTATTCCCATCCTTAATTAAGTTGTTTTTTCCTCATCCTTAACTAGC
JMFN006K23+           GATTGCTTTATTATTATTCCCATCCTTAATTAAGTTGTTTTTTCCTCATCCTTAACTAGC
                      ____________________________________________________________
consensus             GATTGCTTTATTATTATTCCCATCCTTAATTAAGTTGTTTTTTCCTCATCCTTAACTAGC
 
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JMFN032A11+           TTATTGTCGTCCTTAAGAAGCTTGTCCTCATCCTTAAGCTGCTTGTTCTCTTCCTTAAAG
JMFN017E01+           TTATTGTCGTCCTTAAGAAGCTTGTCCTCATCCTTAAGCTGCTTGTTCTCTTCCTTAAAG
JMFN004B02+           TTATTGTCGTCCTTAAGAAGCTTGTCCTCATCCTTAAGCTGCTTGTTCTCTTCCTTAAAG
JMFN006B17+           TTATTGTCGTCCTTAAGAAGCTTGTCCTCATCCTTAAGCTGCTTGTTCTCTTCCTTAAAG
JMFS040H12+           TTATTGTCGTCCTTAAGAAGCTTGTCCTCATCCTTAAGCTGCTTGTTCTCTTCCTTAAAG
JMFN006K23+           TTATTGTCGTCCTTAAGAAGCTTGTCCTCATCCTTAAGCTGCTTGTTCTCTTCCTTAAAG
                      ____________________________________________________________
consensus             TTATTGTCGTCCTTAAGAAGCTTGTCCTCATCCTTAAGCTGCTTGTTCTCTTCCTTAAAG
 
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JMFN032A11+           GCCATATGCATGTCCTTACAGAACTTCGCCTCGTCCTTACATTCCTTGTCGTCGTCCTTA
JMFN017E01+           GCCATATGCATGTCCTTACAGAACTTCGCCTCGTCCTTACATTCCTTGTCGTCGTCCTTA
JMFN004B02+           GCCATATGCATGTCCTTACAGAACTTCGCCTCGTCCTTACATTCCTTGTCGTCGTCCTTA
JMFN006B17+           GCCATATGCATGTCCTTACAGAACTTCGCCTCGTCCTTACATTCCTTGTCGTCGTCCTTA
JMFS040H12+           GCCATATGCATGTCCTTACAGAACTTCGCCTCGTCCTTACATTCCTTGTCGTCGTCCTTA
JMFN006K23+           GCCATATGCATGTCCTTACAGAACTTCGCCTCGTCCTTACATTCCTTGTCGTCGTCCTTA
                      ____________________________________________________________
consensus             GCCATATGCATGTCCTTACAGAACTTCGCCTCGTCCTTACATTCCTTGTCGTCGTCCTTA
 
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JMFN032A11+           CATTGCTTATTCTCAAAGTCCTTGCAACGCATGTCCATATACTCCTTAACTTGTTTTTTC
JMFN017E01+           CATTGCTTATTCTCAAAGTCCTTGCAACGCATGTCCATATACTCCTTAACTTGTTTTTTC
JMFN004B02+           CATTGCTTATTCTCAAAGTCCTTGCAACGCATGTCCATATACTCCTTAACTTGTTTTTTC
JMFN006B17+           CATTGCTTATTCTCAAAGTCCTTGCAACGCATGTCCATATACTCCTTAACTTGTTTTTTC
JMFS040H12+           CATTGCTTATTCTCAAAGTCCTTGCAACGCATGTCCATATACTCCTTAACTTGTTTTTTC
JMFN006K23+           CATTGCTTATTCTCAAAGTCCTTGCAACGCATGTCCATATACTCCTTAACTTGTTTTTTC
                      ____________________________________________________________
consensus             CATTGCTTATTCTCAAAGTCCTTGCAACGCATGTCCATATACTCCTTAACTTGTTTTTTC
 
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JMFN032A11+           TGAAAGGCCCAAAGTTCCTTCTCCTCTTCCTTAAGTTCCTTGCTCTCGTCCTTAAGCTTG
JMFN017E01+           TGAAAGGCCCAAAGTTCCTTCTCCTCTTCCTTAAGTTCCTTGCTCTCGTCCTTAAGCTTG
JMFN004B02+           TGAAAGGCCCAAAGTTCCTTCTCCTCTTCCTTAAGTTCCTTGCTCTCGTCCTTAAGCTTG
JMFN006B17+           TGAAGGGCCCAAAGTTCCTTCTCCTCTTCCTTAAGTTCCTTGCTCTCGTCCTTAAGCTTG
JMFS040H12+           TGAAAGGCCCAAAGTTCCTTCTCCTCTTCCTTAAGTTCCTTGCTCTCGTCCTTAAGCTTG
JMFN006K23+           TGAAAGGCCCAAAGTTCCTTCTCCTCTTCCTTAAGTTCCTTGCTCTCGTCCTTAAGCTTG
                      ____________________________________________________________
consensus             TGAAAGGCCCAAAGTTCCTTCTCCTCTTCCTTAAGTTCCTTGCTCTCGTCCTTAAGCTTG
 
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JMFN032A11+           CCCTCTTTATACGCCTTGTCTGTACATCCCCTTTCACATTCTTTTCCGCATGCAAAGACG
JMFN017E01+           CCCTCTTTATACGCCTTGTCTGTACATCCCCTTTCACATTCTTTTCCGCATGCAAAGACG
JMFN004B02+           CCCTCTTTATACGCCTTGTCTGTACATCCCCTTTCACATTCTTTTCCGCATGCAAAGACG
JMFN006B17+           CCCTCTTTATACGCCTTGTCTGTACATCCCCTTTCACATTCTTTTCCGCATGCAAAGACG
JMFS040H12+           CCCTCTTTATACGCCTTGTCTGTACATCCCCTTTCACATTCTTTTCCGCATGCAAAGACG
JMFN006K23+           CCCTCTTTATACGCCTTGTCTGTACATCCCCTTTCACATTCTTTTCCGCATGCAAAGACG
                      ____________________________________________________________
consensus             CCCTCTTTATACGCCTTGTCTGTACATCCCCTTTCACATTCTTTTCCGCATGCAAAGACG
 
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JMFN032A11+           GTTTTTCCTGTGTCTTTGCAAGCAGAATGGCATGGATCGAAGCATGACTGGTAAACCGAA
JMFN017E01+           GTTTTTCCTGTGTCTTTGCAAGCAGAATGGCATGGATCGAAGCATGACTGGTAAACCGAA
JMFN004B02+           GTTTTTCCTGTGTCTTTGCAAGCAGAATGGCATGGATCGAAGCATGACTGGTAAACCGAA
JMFN006B17+           GTTTTTCCTGTGTCTTTGCAAGCAGAATGGCATGGATCGAAGCATGACTGGTAAACCGAA
JMFS040H12+           GTTTTTCCTGTGTCTTTGCAAGCAGAATGGCATGGATCGAAGCATGACTGGTAAACCGAA
JMFN006K23+           GTTTTTCCTGTGTCTTTGCAAGCAGAATGGCATGGATCGAAGCATGACTGGTAAACCGAA
                      ____________________________________________________________
consensus             GTTTTTCCTGTGTCTTTGCAAGCAGAATGGCATGGATCGAAGCATGACTGGTAAACCGAA
 
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JMFN032A11+           GAAAGCGAAGCGTCGACGGTGAGGACAAACATGCACACCAGACACACTGCAACGTTAACC
JMFN017E01+           GAAAGCGAAGCGTCGACGGTGAGGACAAACATGCACACCAGACACACTGCAACGTTAACC
JMFN004B02+           GAAAGCGAAGCGTCGACGGTGAGGACAAACATGCACACCAGACACACTGCAACGTTAACC
JMFN006B17+           GAAAGCGAAGCGTCGACGGTGAGGACAAACATGCACACCAGACACACTGCAACGTTAACC
JMFS040H12+           GAAAGCGAAGCGTCGACGGTGAGGACAAACATGCACACCAGACACACTGCAACGTTAACC
JMFN006K23+           GAAAGCGAAGCGTCGACGGTGAGGACAAACATGCACACCAGACACACTGCAACGTTAACC
                      ____________________________________________________________
consensus             GAAAGCGAAGCGTCGACGGTGAGGACAAACATGCACACCAGACACACTGCAACGTTAACC
 
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JMFN032A11+           AACTTCTGGGCAGCCGACATTGTTTATTGTTTGTTGTTTTTGTTATTGATGTAGTGTT  
JMFN017E01+           AACTTCTGGGCAGCCGACATTGTTTATTGTTTGTTGTTTTTGTTATTGATGTAGTGTT  
JMFN004B02+           AACTTCTGGGCAGCCGACATTGTTTATTGTTTGTTGTTTTTGTTATTGAT          
JMFN006B17+           AACTTCTGGGCAGCCGACATTGTTTATTGTTTGTTGTTTTTGTTATTGATGTAGTGTT  
JMFS040H12+           AACTTCTGGGCAGCCGACATTGTTTATTGTTTGTTGTTTTTGTT                
JMFN006K23+           AACTTCTGGGCAGCCGACATTGTTTATTGTTTGTTGTTTTTGTTATTGATGTAGTGTTTC
                      ____________________________________________________________
consensus             AACTTCTGGGCAGCCGACATTGTTTATTGTTTGTTGTTTTTGTTATTGATGTAGTGTTTC