Contig 006121:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023H20Sequence693006121 (5)ref|XP_002266252.1|3e-100PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Vitis vinifera] emb|CA
JMFF027F20Sequence757006121 (5)ref|XP_002266252.1|3e-117PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Vitis vinifera] emb|CA
JMFN005A15Sequence470006121 (5)ref|XP_002266252.1|5e-28PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Vitis vinifera] emb|CA
JMFN006P21Sequence562006121 (5)ref|XP_002266252.1|5e-65PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Vitis vinifera] emb|CA
JMFN012L03Sequence599006121 (5)ref|XP_002266252.1|3e-65PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Vitis vinifera] emb|CA

Alignment

This contig is upended


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rJMFF027F20+                                     AATATGTGATGGGAAGGGTTATATTGACATGTC
                      ____________________________________________________________
consensus                                        AATATGTGATGGGAAGGGTTATATTGACATGTC
 
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rJMFF027F20+          AACTGTTGATGCTGATACTTCTTCGAAAATCAATGAGGCAATTATCTCTAAAGGTGGTAG
rJMFF023H20+                                                       CTCTAAAGGTGGTAG
                      ____________________________________________________________
consensus             AACTGTTGATGCTGATACTTCTTCGAAAATCAATGAGGCAATTATCTCTAAAGGTGGTAG
 
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rJMFF027F20+          TTTCCTTGAAGCCCCAGTTTCAGGCAGTAAAAAGCCCGCTGAAGATGGGCAGTTAGTTAT
rJMFF023H20+          TTTCCTTGAAGCCCCAGTTTCAGGCAGTAAAAAGCCCGCTGAAGATGGGCAGTTAGTTAT
                      ____________________________________________________________
consensus             TTTCCTTGAAGCCCCAGTTTCAGGCAGTAAAAAGCCCGCTGAAGATGGGCAGTTAGTTAT
 
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rJMFF027F20+          CCTATCTGCTGGAGATAAGGCTTTATATGATCAAGTACTTCCTGCTTTTGATGTATTGGG
rJMFF023H20+          CCTATCTGCTGGAGATAAGGCTTTATATGATCAAGTACTTCCTGCTTTTGATGTATTGGG
                      ____________________________________________________________
consensus             CCTATCTGCTGGAGATAAGGCTTTATATGATCAAGTACTTCCTGCTTTTGATGTATTGGG
 
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rJMFF027F20+          AAAGAAATCCTTTTTCCTGGGACAGGTGGGGAATGGTGCAAAAATGAAACTTGTTGTTAA
rJMFF023H20+          AAAGAAATCCTTTTTCCTGGGACAGGTGGGGAATGGTGCAAAAATGAAACTTGTTGTTAA
JMFN006P21-                            TGGGACAGGTGGGGAATGGTGCAAAAATGAAACTTGTTGTTAA
JMFN012L03-                            TGGGACAGGTGGGGAATGGTGCAAAAATGAAACTTGTTGTTAA
                      ____________________________________________________________
consensus             AAAGAAATCCTTTTTCCTGGGACAGGTGGGGAATGGTGCAAAAATGAAACTTGTTGTTAA
 
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rJMFF027F20+          CATGGTAATGGGCAGCATGATGAATGCATTTTCAGAAGGACTTGTGCTGGCTGACAAAAG
rJMFF023H20+          CATGGTAATGGGCAGCATGATGAATGCATTTTCAGAAGGACTTGTGCTGGCTGACAAAAG
JMFN006P21-           CATGGTAATGGGCAGCATGATGAATGCATTTTCAGAAGGACTTGTGCTGGCTGACAAAAG
JMFN012L03-           CATGGTAATGGGCAGCATGATGAATGCATTTTCAGAAGGACTTGTGCTGGCTGACAAAAG
                      ____________________________________________________________
consensus             CATGGTAATGGGCAGCATGATGAATGCATTTTCAGAAGGACTTGTGCTGGCTGACAAAAG
 
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rJMFF027F20+          TGGATTGGAACAGCAAACTCTCCTTGATGTGTTGGATCTTGGAGCAGTTGCTAACCCAAT
rJMFF023H20+          TGGATTGGAACAGCAAACTCTCCTTGATGTGTTGGATCTTGGAGCAGTTGCTAACCCAAT
JMFN006P21-           TGGATTGGAACAGCAAACTCTCCTTGATGTGTTGGATCTTGGAGCAGTTGCTAACCCAAT
JMFN012L03-           TGGATTGGAACAGCAAACTCTCCTTGATGTGTTGGATCTTGGAGCAGTTGCTAACCCAAT
                      ____________________________________________________________
consensus             TGGATTGGAACAGCAAACTCTCCTTGATGTGTTGGATCTTGGAGCAGTTGCTAACCCAAT
 
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rJMFF027F20+          GTTCAAGATGAAAGGACCTTCCATGATAAAAAATAATTATTCCCCCGCATTTCCTCTGAA
rJMFF023H20+          GTTCAAGATGAAAGGACCTTCCATGATAAAAAATAATTATTCCCCCGCATTTCCTCTGAA
JMFN006P21-           GTTCAAGATGAAAGGACCTTCCATGATAAAAAATAATTATTCCCCCGCATTTCCTCTGAA
JMFN012L03-           GTTCAAGATGAAAGGACCTTCCATGATAAAAAATAATTATTCCCCCGCATTTCCTCTGAA
JMFN005A15+                     AAAGGACCTTCCATGATAAAAAATAATTATTCCCCCGCATTTCCTCTGAA
                      ____________________________________________________________
consensus             GTTCAAGATGAAAGGACCTTCCATGATAAAAAATAATTATTCCCCCGCATTTCCTCTGAA
 
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rJMFF027F20+          ACATCAGCAGAAGGACATGAGGCTGGCCCTTGCTCTTGGGGACGAAAACGCAGTGTCAAT
rJMFF023H20+          ACATCAGCAGAAGGACATGAGGCTGGCCCTTGCTCTTGGGGACGAAAACGCAGTGTCAAT
JMFN006P21-           ACATCAGCAGAAGGACATGAGGCTGGCCCTTGCTCTTGGGGACGAAAACGCAGTGTCAAT
JMFN012L03-           ACATCAGCAGAAGGACATGAGGCTGGCCCTTGCTCTTGGGGACGAAAACGCAGTGTCAAT
JMFN005A15+           ACATCAGCAGAAGGACATGAGGCTGGCCCTTGCTCTTGGGGACGAAAACGCAGTGTCAAT
                      ____________________________________________________________
consensus             ACATCAGCAGAAGGACATGAGGCTGGCCCTTGCTCTTGGGGACGAAAACGCAGTGTCAAT
 
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rJMFF027F20+          GCCCGTTGCAGCTGCTGCAAACGAGGCATTCAAGAAGGCCAGGAGCTTGGGTTTGGGTGA
rJMFF023H20+          GCCCGTTGCAGCTGCTGCAAACGAGGCATTCAAGAAGGCCAGGAGCTTGGGTTTGGGTGA
JMFN006P21-           GCCCGTTGCAGCTGCTGCAAACGAGGCATTCAAGAAGGCCAGGAGCTTGGGTTTGGGTGA
JMFN012L03-           GCCCGTTGCAGCTGCTGCAAACGAGGCATTCAAGAAGGCCAGGAGCTTGGGTTTGGGTGA
JMFN005A15+           GCCCGTTGCAGCTGCTGCAAACGAGGCATTCAAGAAGGCCAGGAGCTTGGGTTTGGGTGA
                      ____________________________________________________________
consensus             GCCCGTTGCAGCTGCTGCAAACGAGGCATTCAAGAAGGCCAGGAGCTTGGGTTTGGGTGA
 
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rJMFF027F20+          CCTCGACTTTTCAGCTGTGTACGAGACTGTCAAGCACGCCCAGCCTTGAATCTGATAACA
rJMFF023H20+          CCTCGACTTTTCAGCTGTGTACGAGACTGTCAAGCACGCCCAGCCTTGAATCTGATAACA
JMFN006P21-           CCTCGACTTTTCAGCTGTGTACGAGACTGTCAAGCACGCCCAGCCTTGAATCTGATAACA
JMFN012L03-           CCTCGACTTTTCAGCTGTGTACGAGACTGTCAAGCACGCCCAGCCTTGAATCTGATAACA
JMFN005A15+           CCTCGACTTTTCAGCTGTGTACGAGACTGTCAAGCACGCCCAGCCTTGAATCTGATAACA
                      ____________________________________________________________
consensus             CCTCGACTTTTCAGCTGTGTACGAGACTGTCAAGCACGCCCAGCCTTGAATCTGATAACA
 
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rJMFF027F20+          CGGATCTGTATTTCAGATGAGGATCACTTGGATAGGAATAAAGACATCACCCTTCGGGCC
rJMFF023H20+          CGGATCTGTATTTCAGATGAGGATCACTTGGATAGGAATAAAGACATCACCCTTCGGGCC
JMFN006P21-           CGGATCTGTATTTCAGATGAGGATCACTTGGATAGGAATAAAGACATCACCCTTCGGGCC
JMFN012L03-           CGGATCTGTATTTCAGATGAGGATCACTTGGATAGGAATAAAGACATCACCCTTCGGGCC
JMFN005A15+           CGGATCTGTATTTCAGATGAGGATCACTTGGATAGGAATAAAGACATCACCCTTCGGGCC
                      ____________________________________________________________
consensus             CGGATCTGTATTTCAGATGAGGATCACTTGGATAGGAATAAAGACATCACCCTTCGGGCC
 
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rJMFF027F20+          TTCTCTGTAACATTTTCTTGTGTGAAAACTGCATCCTCCTACTGTGGATCACCTGGTTGT
rJMFF023H20+          TTCTCTGTAACATTTTCTTGTGTGAAAACTGCATCCTCCTACTGTGGATCACCTGGTTGT
JMFN006P21-           TTCTCTGTAACATTTTCTTGTGTGAAAACTGCATCCTCCTACTGTGGATCACCTGGTTGT
JMFN012L03-           TTCTCTGTAACATTTTCTTGTGTGAAAACTGCATCCTCCTACTGTGGATCACCTGGTTGT
JMFN005A15+           TTCTCTGTAACATTTTCTTGTGTGAAAACTGCATCCTCCTACTGTGGATCACCTGGTTGT
                      ____________________________________________________________
consensus             TTCTCTGTAACATTTTCTTGTGTGAAAACTGCATCCTCCTACTGTGGATCACCTGGTTGT
 
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rJMFF027F20+          ATTC                                                        
rJMFF023H20+          ATTCTTGAAGTTGCTTCT                                          
JMFN006P21-           ATTCTTGAAGTTGCTTCTTAGTTGATGAATTGAACTATG                     
JMFN012L03-           ATTCTTGAAGTTGCTTCTTAGTTGATGAATTGAACTATGCACAGTAATTGCAGAATTGTC
JMFN005A15+           ATTCTTGAAGTTGCTTCTTAGTTGATGAATTGAACTATGCACAGTAATTGCAGAATTGTC
                      ____________________________________________________________
consensus             ATTCTTGAAGTTGCTTCTTAGTTGATGAATTGAACTATGCACAGTAATTGCAGAATTGTC
 
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JMFN012L03-           CCATAACCTTTCAC                                              
JMFN005A15+           CCATAACCTTTCACATTGGTTATXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTCTC
                      ____________________________________________________________
consensus             CCATAACCTTTCACATTGGTTATNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTCTC