Contig 006120:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN004M12Sequence498006120 (4)ref|XP_006353607.1|102PREDICTED: uncharacterized protein LOC102588917 [Solanum tuberosum]
JMFN042A17Sequence649006120 (4)emb|CDP18882.1|3e-49unnamed protein product [Coffea canephora]
JMSF016J01Sequence448006120 (4)emb|CDP18882.1|2e-50unnamed protein product [Coffea canephora]713000121 (18)ref|XP_011098728.1|3e-88PREDICTED: 40S ribosomal protein S19-1 [Sesamum indicum]
JMSF034E16Sequence772017883674006120 (4)ref|XP_004300435.1|131PREDICTED: uncharacterized protein LOC101293204 [Fragaria vesca subsp. vesca] r

Alignment

This contig is upended


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rJMSF034E16-                                                                 CAAAA
                      ____________________________________________________________
consensus                                                                    CAAAA
 
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rJMSF034E16-          TGACTTTTTATCTTTCAATTGCCTTTCCTAGTCTGCAATCCAAATATCATCATTAGGGTT
JMFN042A17+                                            TGCAATCCAAATATCATCATTAGGGTT
                      ____________________________________________________________
consensus             TGACTTTTTATCTTTCAATTGCCTTTCCTAGTCTGCAATCCAAATATCATCATTAGGGTT
 
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rJMSF034E16-          TCTATTCTCCTCTTCATCTGTAGCATCCAGAAGCCATTCATGGACTCCAAAAAGAAAGAA
JMFN042A17+           TCTATTCTCCTCTTCATCTGTAGCATCCAGAAGCCATTCATGGACTCCAAAAAGAAAGAA
                      ____________________________________________________________
consensus             TCTATTCTCCTCTTCATCTGTAGCATCCAGAAGCCATTCATGGACTCCAAAAAGAAAGAA
 
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rJMSF034E16-          AAGAATTTATTAAGCTGCAGAACAAAACTGTTTCCAATTTGAAACCAGGAGAGCAAAAAG
JMFN042A17+           AAGAATTTATTAAGCTGCAGAACAAAACTGTTTCCAATTTGAAACCAGGAGAGCAAAAAG
                      ____________________________________________________________
consensus             AAGAATTTATTAAGCTGCAGAACAAAACTGTTTCCAATTTGAAACCAGGAGAGCAAAAAG
 
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rJMSF034E16-          GTGTTTTGCTAGCTAAGCAAATACCAGATGGGTTTTAACTTTTAAGTAATTAAGACAATG
JMFN042A17+           GTGTTTTGCTAGCTAAGCAAATACCAGATGGGTTTTAACTTTTAAGTAATTAAGACAATG
                      ____________________________________________________________
consensus             GTGTTTTGCTAGCTAAGCAAATACCAGATGGGTTTTAACTTTTAAGTAATTAAGACAATG
 
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rJMSF034E16-          GGTTTATGAGCATGGTCTGCGAGGCAAGCCAAATAGTGAATCTCTGTTATTTCAAACACG
JMFN042A17+           GGTTTATGAGCATGGTCTGCGAGGCAAGCCAAATAGTGAATCTCTGTTATTTCAAACACG
JMSF016J01+             TTTATGAGCATGGTCTGCGAGNCAAGCCAAATAGTGAATCTCTGTTATTTCAAACACG
                      ____________________________________________________________
consensus             GGTTTATGAGCATGGTCTGCGAGGCAAGCCAAATAGTGAATCTCTGTTATTTCAAACACG
 
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rJMSF034E16-          GATGAACACGAGATGGTCTATGCAGAAGCGGTCTTCTTTTGCTGGAACATGACGGCCCAA
JMFN042A17+           GATGAACACGAGATGGTCTATGCAGAAGCGGTCTTCTTTTGCTGGAACATGACGGCCCAA
JMSF016J01+           GATGAACACGAGATGGTCTATGCAGAAGCGGTCTTCTTTTGCTGGAACATGACGGCCCAA
JMFN004M12+                                   GAAGCGGTCTTCTTTTGCTGGAACATGACGGCCCAA
                      ____________________________________________________________
consensus             GATGAACACGAGATGGTCTATGCAGAAGCGGTCTTCTTTTGCTGGAACATGACGGCCCAA
 
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rJMSF034E16-          ACGGGGACTCCAACACCAATGCTGAATGCAGTAAATACGCCAAGACTCATCTTCAGCTTC
JMFN042A17+           ACGGGGACTCCAACACCAATGCTGAATGCAGTAAATACGCCAAGACTCATCTTCAGCTTC
JMSF016J01+           ACGGGGACTCCAACACCAATGCTGAATGCAGTAAATACGCCAAGACTCATCTTCAGCTTC
JMFN004M12+           ACGGGGACTCCAACACCAATGCTGAATGCAGTAAATACGCCAAGACTCATCTTCAGCTTC
                      ____________________________________________________________
consensus             ACGGGGACTCCAACACCAATGCTGAATGCAGTAAATACGCCAAGACTCATCTTCAGCTTC
 
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rJMSF034E16-          TGGTTTTTCATCCTATCCAAGTTGTACATGTGCTTTGCGTGAATGTAGAATGGCTC    
JMFN042A17+           TGGTTTTTCATCCTATCCAAGTTGTACATGTGCTTTGCGTGAATGTAGAATGGCTC    
JMSF016J01+           TGGTTTTTCATCCTATCCAAGTTGTACATGTGCTTTGCGTGAATGTAGAATGGCTC    
JMFN004M12+           TGGTTTTT--TCCTATCCAAGTTGTACATGTGCTTTGCGTGAATGTAGAATGGCTCATCG
                      ____________________________________________________________
consensus             TGGTTTTTCATCCTATCCAAGTTGTACATGTGCTTTGCGTGAATGTAGAATGGCTCATCG
 
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JMFN004M12+           TGGCCATGACCTCCCATTCTTTTCACACCTGTTGAGTGGATTCCTCTGTTCAGAGTCTTG
                      ____________________________________________________________
consensus             TGGCCATGACCTCCCATTCTTTTCACACCTGTTGAGTGGATTCCTCTGTTCAGAGTCTTG
 
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JMFN004M12+           GGGAGAAATGAATCGGCTGCCGTTATGAGCTTGGAGGCGCACGATCTCAACCCGTTGTTC
                      ____________________________________________________________
consensus             GGGAGAAATGAATCGGCTGCCGTTATGAGCTTGGAGGCGCACGATCTCAACCCGTTGTTC