Contig 006114:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012H08Sequence510006114 (3)emb|CDO99147.1|9e-48unnamed protein product [Coffea canephora]432013656 (2)ref|XP_009615053.1|6e-08PREDICTED: auxin-responsive protein IAA4-like [Nicotiana tomentosiformis]
JMFF029L01Sequence486006114 (3)ref|XP_009612692.1|4e-43PREDICTED: auxin-responsive protein IAA4-like [Nicotiana tomentosiformis]412013656 (2)gb|AAD32142.1|AF123504_12e-19Nt-iaa2.3 deduced protein [Nicotiana tabacum]
JMFN001C12Sequence570006114 (3)ref|XP_011091109.1|8e-59PREDICTED: auxin-induced protein 22D [Sesamum indicum]

Alignment

This contig is upended


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JMFN001C12+                                         TCAGAGTATTGACCTATGGAGAGTTTAAAC
                      ____________________________________________________________
consensus                                           TCAGAGTATTGACCTATGGAGAGTTTAAAC
 
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JMFF012H08+                                 GCTCTGGGTAGCCATTGTAGACCTTGAGGTCAATCTTT
JMFF029L01+                                                         TGAGGTCAATCTTT
JMFN001C12+           ATGGCTTCCAGTGCTTTTAGAAGCTCTGGGTAGCCATTGTAGACCTTGAGGTCAATCTTT
                      ____________________________________________________________
consensus             ATGGCTTCCAGTGCTTTTAGAAGCTCTGGGTAGCCATTGTAGACCTTGAGGTCAATCTTT
 
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JMFF012H08+           CTGAGATAAGGGGCTCCATCCATGCTCACTTTCACATACATCCCACTCTCAGATGCATCT
JMFF029L01+           CTGAGATAAGGGGCTCCATCCATGCTCACTTTCACATACATCCCACTCTCAGATGCATCT
JMFN001C12+           CTGAGATAAGGGGCTCCATCCATGCTCACTTTCACATACATCCCACTCTCAGATGCATCT
                      ____________________________________________________________
consensus             CTGAGATAAGGGGCTCCATCCATGCTCACTTTCACATACATCCCACTCTCAGATGCATCT
 
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JMFF012H08+           GCTTTTTTCACTTGCAGGCTGTTCTTCCTGTAAGATCTCACTGGTGGCCATCCCACAATC
JMFF029L01+           GCTTTTTTCACTTGCAGGCTGTTCTTCCTGTAAGATCTCACTGGTGGCCATCCCACAATC
JMFN001C12+           GCTTTTTTCACTTGCAGGCTGTTCTTCCTGTAAGATCTCACTGGTGGCCATCCCACAATC
                      ____________________________________________________________
consensus             GCTTTTTTCACTTGCAGGCTGTTCTTCCTGTAAGATCTCACTGGTGGCCATCCCACAATC
 
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JMFF012H08+           TGTGCCTTGGCAACAGGAGAGGCTTTGGCATCAGAATTGGCTTTGGATTCACAGTCTTCT
JMFF029L01+           TGTGCCTTGGCAACAGGAGAGGCTTTGGCATCAGAATTGGCTTTGGATTCACAGTCTTCT
JMFN001C12+           TGTGCCTTGGCAACAGGAGAGGCTTTGGCATCAGAATTGGCTTTGGATTCACAGTCTTCT
                      ____________________________________________________________
consensus             TGTGCCTTGGCAACAGGAGAGGCTTTGGCATCAGAATTGGCTTTGGATTCACAGTCTTCT
 
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JMFF012H08+           TCATCACAGTCTGATTCAGGAAGGGCTCTTTTGTTCTTGTTCTTGGCACTTGAAACCATT
JMFF029L01+           TCATCACAGTCTGATTCAGGAAGGGCTCTTTTGTTCTTGTTCTTGGCACTTGAAACCATT
JMFN001C12+           TCATCACAGTCTGATTCAGGAAGGGCTCTTTTGTTCTTGTTCTTGGCACTTGAAACCATT
                      ____________________________________________________________
consensus             TCATCACAGTCTGATTCAGGAAGGGCTCTTTTGTTCTTGTTCTTGGCACTTGAAACCATT
 
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JMFF012H08+           TCTTTCTCACACTCTTCTGTTCCAGGCAACCCCAGTCTAAGCTCAGTTGCCTTGAGATTC
JMFF029L01+           TCTTTCTCACACTCTTCTGTTCCAGGCAACCCCAGTCTAAGCTCAGTTGCCTTGAGATTC
JMFN001C12+           TCTTTCTCACACTCTTCTGTTCCAGGCAACCCCAGTCTAAGCTCAGTTGCCTTGAGATTC
                      ____________________________________________________________
consensus             TCTTTCTCACACTCTTCTGTTCCAGGCAACCCCAGTCTAAGCTCAGTTGCCTTGAGATTC
 
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JMFF012H08+           AGATCACTCTCATGAGCCACAACACCTTCCATGGCTATCTTCTCTGATGGATTCTTGGAA
JMFF029L01+           AGATCACTCTCATGAGCCACAACACCTTCCATGGCTATCTTCTCTGATGGATTCTTGGAA
JMFN001C12+           AGATCACTCTCATGAGCCACAACACCTTCCATGGCTATCTTCTCTGATGGATTCTTGGAA
                      ____________________________________________________________
consensus             AGATCACTCTCATGAGCCACAACACCTTCCATGGCTATCTTCTCTGATGGATTCTTGGAA
 
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JMFF012H08+           CCAAACCTTAAAGTTTGCAACAATCTCAAAGGAACTTGAAAAAGATGAGAACTTTGATTG
JMFF029L01+           CCAAACCTTAAAGTTTGCAACAATCTCAAAGGAACTTGAAAAAGATGAGAACTTTGATTG
JMFN001C12+           CCAAACCTTAAAGTTTGCAACAATCTCAAAGGAACTTGAAAAAGATGAGAACTTTGATTG
                      ____________________________________________________________
consensus             CCAAACCTTAAAGTTTGCAACAATCTCAAAGGAACTTGAAAAAGATGAGAACTTTGATTG
 
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JMFF012H08+           GTTTTCCTGCTCAAGATTGATTGATTGATAGATAGATGGATGTGAGTTTCTT        
JMFF029L01+           GTTTTCCTGCTCAAGATTGATTGATTGATAGATAGATGGATGTGAGTTTCTT        
JMFN001C12+           GTTTTCCTGCTCAAGATTGATTGATTGATAGATAGATGGATGTGAGTTTCTTGATATGAA
                      ____________________________________________________________
consensus             GTTTTCCTGCTCAAGATTGATTGATTGATAGATAGATGGATGTGAGTTTCTTGATATGAA