Contig 006110:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026O07Sequence516006110 (6)ref|XP_006367482.1|8e-41PREDICTED: squamosa promoter-binding protein 1-like [Solanum tuberosum]715006110 (6)ref|XP_009626190.1|2e-53PREDICTED: squamosa promoter-binding-like protein 4 [Nicotiana tomentosiformis]
JMFF029E17Sequence523006110 (6)ref|XP_009626190.1|2e-52PREDICTED: squamosa promoter-binding-like protein 4 [Nicotiana tomentosiformis]756006110 (6)ref|XP_009626190.1|2e-53PREDICTED: squamosa promoter-binding-like protein 4 [Nicotiana tomentosiformis]
JMFF051H24Sequence567006110 (6)ref|XP_006367482.1|1e-40PREDICTED: squamosa promoter-binding protein 1-like [Solanum tuberosum]479006110 (6)ref|XP_009781601.1|2e-43PREDICTED: squamosa promoter-binding-like protein 4 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF029E17-                                                         TGCATTTATTTAG
                      ____________________________________________________________
consensus                                                            TGCATTTATTTAG
 
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rJMFF026O07-                     CCAATATAATAATCATTAGTAGATACAAATGAAACCTTAGACGAATTGA
rJMFF029E17-          CAATGTAAAAGCCAATATAATAATCATTAGTAGATACAAATGAAACCTTAGACGAATTGA
                      ____________________________________________________________
consensus             CAATGTAAAAGCCAATATAATAATCATTAGTAGATACAAATGAAACCTTAGACGAATTGA
 
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rJMFF026O07-          AGCAGCTTTGGATGCATACAAACAACCAAAACATATATGGCTTCTCTTCTTTCTTCAATA
rJMFF029E17-          AGCAGCTTTGGATGCATACAAACAACCAAAACATATATGGCTTCTCTTCTTTCTTCAATA
                      ____________________________________________________________
consensus             AGCAGCTTTGGATGCATACAAACAACCAAAACATATATGGCTTCTCTTCTTTCTTCAATA
 
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rJMFF051H24-                         GACTTATATATCTAACTATATAAAATTTGAGATTCGATCAGATGA
rJMFF026O07-          TTATGACCCCATATAGACTTATATATCTAACTATATAAAATTTGAGATTCGATCAGATGA
rJMFF029E17-          TTATGACCCCATATAGACTTATATATCTAACTATATAAAATTTGAGATTCGATCAGATGA
                      ____________________________________________________________
consensus             TTATGACCCCATATAGACTTATATATCTAACTATATAAAATTTGAGATTCGATCAGATGA
 
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rJMFF051H24-          CAGAAGATCAGAGAGAGGGCAATTCATAGTCGATTAACATCAATAAGGATCATATCCTTA
rJMFF026O07-          CAGAAGATCAGAGAGAGGGCAATTCATAGTCGATTAACATCAATAAGGATCATATCCTTA
rJMFF029E17-          CAGAAGATCAGAGAGAGGGCAATTCATAGTCGATTAACATCAATAAGGATCATATCCTTA
                      ____________________________________________________________
consensus             CAGAAGATCAGAGAGAGGGCAATTCATAGTCGATTAACATCAATAAGGATCATATCCTTA
 
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rJMFF051H24-          ATATTTGTAAAAAAAAATTATCTGATCTGGAAGTGTTTGAAAGAAGAATTTTCTTGGATA
rJMFF026O07-          ATATTTGTAAAAAAAAATTATCTGATCTGGAAGTGTTTGAAAGAAGAATTTTCTTGGATA
rJMFF029E17-          ATATTTGTAAAAAAAAATTATCTGATCTGGAAGTGTTTGAAAGAAGAATTTTCTTGGATA
JMFF029E17+                                              TTTGAAAGAAGAATTTTCTNGGATA
                      ____________________________________________________________
consensus             ATATTTGTAAAAAAAAATTATCTGATCTGGAAGTGTTTGAAAGAAGAATTTTCTTGGATA
 
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rJMFF051H24-          GACATCTGAATTCTTCCCTTGTCGTCAACCTGCCCGCGCACATTTATGTCCTTCAGATAC
rJMFF026O07-          GACATCTGAATTCTTCCCTTGTCGTCAACCTGCCCGCACACATTTATGTCCTTCAGATAC
rJMFF029E17-          GACATCTGAATTCTTCCCTTGTCGTCAACCTGCCCGCACACATTTATGTCCTTCAGATAC
JMFF029E17+           GACATCTGAATTCTTCCCTTGTCGTCAACCTGCCCGCACACATTTATGTCCTTCAGATAC
JMFF026O07+                                           CCCGCACACATTTATGTCCTTCAGATAC
JMFF051H24+                                                         TGTCCTTCAGATAC
                      ____________________________________________________________
consensus             GACATCTGAATTCTTCCCTTGTCGTCAACCTGCCCGCACACATTTATGTCCTTCAGATAC
 
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rJMFF051H24-          TGATTGCGGGTTGATGAAGATGCTGCCAGTGCTTCTGCCGCCTGAGACGACTCTGATGAT
rJMFF026O07-          TGATTGCGGGTTGATGAAGATGCTGCCACTGCTTCTGCCGCCTGAGACGACTCTGATGAT
rJMFF029E17-          TGATTGCGGGTTGATGAAGATGCTGCCACTGCTTCTGCCGCCTGAGACGACTCTGATGAT
JMFF029E17+           TGATTGCGGGTTGATGAAGATGCTGCCACTGCTTCTGCCGCCTGAGACGACTCTGATGAT
JMFF026O07+           TGATTGCGGGTTGATGAAGATGCTGCCANTGCTTNTGCCGCNTGAGACGACTNTGATGAT
JMFF051H24+           TGATTGCGGGTTGATGAAGATGCTGCCAGTGCTTCTGCCGCCTGAGACGACTCTGATGAT
                      ____________________________________________________________
consensus             TGATTGCGGGTTGATGAAGATGCTGCCACTGCTTCTGCCGCCTGAGACGACTCTGATGAT
 
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rJMFF051H24-          ATAGCGGAGCTCTTCCTCCGCCTCTCATTGTGTCCGGCCAACCTCCTCCGGCAACTCCTC
rJMFF026O07-          ATAGCGGAGCTCTTCCTCCGCCTCTCATTGTGTCCGGCCAACCTCCTCCGGCAACTCCTC
rJMFF029E17-          ATAGCGGAGCTCTTCCTCCGCCTCTCATTGTGTCCGGCCAACCTCCTCCGGCAACTCCTC
JMFF029E17+           ATAGCGGAGCTCTTCCTCCGCCTCTCATTGTGTCCGGCCAACCTCCTCCGGCAACTCCTC
JMFF026O07+           ATAGCGGAGCTCTTCCTCCGCCTCTCATTGTGTCCGGCCAACCTCCTCCGGCAACTCCTC
JMFF051H24+           ATAGCGGAGCTCTTCCTCCGCCTCTCATTGTGTCCGGCCAACCTCCTCCGGCAACTCCTC
                      ____________________________________________________________
consensus             ATAGCGGAGCTCTTCCTCCGCCTCTCATTGTGTCCGGCCAACCTCCTCCGGCAACTCCTC
 
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rJMFF051H24-          TTGGCTTCGTCGAATTCACCAAGCTCGTGAAATCGGCTGCATTGCTGACAGAAGCGTTGC
rJMFF026O07-          TTGGCTTCGTCGAATTCACCAAGCTCGTGAAATCGGCTGCATTGCTGACAGAAGCGTTGC
rJMFF029E17-          TTGGCTTCGTCGAATTCACCAAGCTCGTGAAATCGGCTGCATTGCTGACAGAAGCGTTGC
JMFF029E17+           TTGGCTTCGTCGAATTCACCAAGCTCGTGAAATCGGCTGCATTGCTGACAGAAGCGTTGC
JMFF026O07+           TTGGCTTCGTCGAATTCACCAAGCTCGTGAAATCGGCTGCATTGCTGACAGAAGCGTTGC
JMFF051H24+           TTGGCTTCGTCGAATTCACCAAGCTCGTGAAATCGGCTGCATTGCTGACAGAAGCGTTGC
                      ____________________________________________________________
consensus             TTGGCTTCGTCGAATTCACCAAGCTCGTGAAATCGGCTGCATTGCTGACAGAAGCGTTGC
 
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rJMFF051H24-          CGGAGACCGGCGACGACCACCACCTGCGCCTTGGCATGGAACTCGCACACCTTATGCCGC
rJMFF026O07-          CGGAGACCGGCGACGACCACCACCTGCGCCTTGGCATGGAACTCGCACACCTTATGCCGC
rJMFF029E17-          CGGAGACCGGCGACGACCACCACCTGCGCCTTGGCATGGAACTCGCACACCTTATGCCGC
JMFF029E17+           CGGAGACCGGCGACGACCACCACCTGCGCCTTGGCATGGAACTCGCACACCTTATGCCGC
JMFF026O07+           CGGAGACCGGCGACGACCACCACCTGCGCCTTGGCATGGAACTCGCACACCTTATGCCGC
JMFF051H24+           CGGAGACCGGCGACGACCACCACCTGCGCCTTGGCATGGAACTCGCACACCTTATGCCGC
                      ____________________________________________________________
consensus             CGGAGACCGGCGACGACCACCACCTGCGCCTTGGCATGGAACTCGCACACCTTATGCCGC
 
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rJMFF051H24-          CGGTGGTACTGCTT                                              
rJMFF026O07-          CGGTGGTACTGCTTAGCTTCGTGAAGATCAGCACTGCACTTCTCAGCCTGGCAGCTCCTC
rJMFF029E17-          CGGTGGTACTGCTTAGCTTCGTGAAGATCAGCACTGCACTTCTCAGCCTGGCAGCTCCTC
JMFF029E17+           CGGTGGTACTGCTTAGCTTCGTGAAGATCAGCACTGCACTTCTCAGCCTGGCAGCTCCTC
JMFF026O07+           CGGTGGTACTGCTTAGCTTCGTGAAGATCAGCACTGCACTTCTCAGCCTGGCAGCTCCTC
JMFF051H24+           CGGTGGTACTGCTTAGCTTCGTGAAGATCAGCACTGCACTTCTCAGCCTGGCAGCTCCTC
                      ____________________________________________________________
consensus             CGGTGGTACTGCTTAGCTTCGTGAAGATCAGCACTGCACTTCTCAGCCTGGCAGCTCCTC
 
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rJMFF026O07-          ATGACCGGCCCTCCATTGTTGCCGCCACCCCCTTTCTTGCCGCCTCGCTTCTTCTTCTCG
rJMFF029E17-          ATGACCGGCCCTCCATTGTTGCCGCCACCCCCTTTCTTGCCGCCTCGCTTCTTCTTCTCG
JMFF029E17+           ATGACCGGCCCTCCATTGTTGCCGCCACCCCCTTTCTTGCCGCCTCGCTTCTTCTTCTCG
JMFF026O07+           ATGACCGGCCCTCCATTGTTGCCGCCACCCCCTTTCTTGCCGCCTCGCTTCTTCTTCTCG
JMFF051H24+           ATGACCGGCCCTCCATTGTTGCCGCCACCCCCTTTCTTGCCGCCTCGCTTCTTCTTCTCG
                      ____________________________________________________________
consensus             ATGACCGGCCCTCCATTGTTGCCGCCACCCCCTTTCTTGCCGCCTCGCTTCTTCTTCTCG
 
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rJMFF026O07-          TCGTCG                                                      
rJMFF029E17-          TCGTCGGCGGAAATGGCCGACGA                                     
JMFF029E17+           TCGTCGGCGGAAATGGCCGACGACGGCGACTCCCTCTCCCCCGCCGCCGCGTCTCCCTCC
JMFF026O07+           TCGTCGGCGGAAATGGCCGACGACGGCGACTCCCTCTCCCCCGCCGCCGCGTCTCCCTCC
JMFF051H24+           TCGTCGGCGGAAATGGCCGACGACGGCGACTCCCTCTCCCCCGCCGCCGCGTCTCCCTCC
                      ____________________________________________________________
consensus             TCGTCGGCGGAAATGGCCGACGACGGCGACTCCCTCTCCCCCGCCGCCGCGTCTCCCTCC
 
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JMFF029E17+           ATGGCCTCCCTCTTCAGT                                          
JMFF026O07+           ATGGCCTCCCTCTTCAGTACCACCTTGCTACTCATGATCGATCAAATTTATAGGGGATCG
JMFF051H24+           ATGGCCTCCCTCTTCAGTACCACCTTGCTACTCATGATCGATCAAATTTATAGGGGATCG
                      ____________________________________________________________
consensus             ATGGCCTCCCTCTTCAGTACCACCTTGCTACTCATGATCGATCAAATTTATAGGGGATCG
 
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JMFF026O07+           AT                                                          
JMFF051H24+           ATAGAGACGGAGAACATATGAGTGAGTGATGATATATGTGGAGAGATAGATATGGAGATC
                      ____________________________________________________________
consensus             ATAGAGACGGAGAACATATGAGTGAGTGATGATATATGTGGAGAGATAGATATGGAGATC