| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF044O14 | Sequence | 609 | 006106 (5) | ref|XP_004242335.1| | 2e-78 | PREDICTED: 40S ribosomal protein S24-1 [Solanum lycopersicum] ref|XP_010323045.1 | 452 | 006106 (5) | ref|XP_004242335.1| | 1e-62 | PREDICTED: 40S ribosomal protein S24-1 [Solanum lycopersicum] ref|XP_010323045.1 |
| JMFF051A11 | Sequence | 590 | 006106 (5) | ref|XP_004242335.1| | 1e-78 | PREDICTED: 40S ribosomal protein S24-1 [Solanum lycopersicum] ref|XP_010323045.1 | 303 | 006106 (5) | gb|KJB80920.1| | 3e-25 | hypothetical protein B456_013G121400 [Gossypium raimondii] |
| JMFN009O23 | Sequence | 627 | 006106 (5) | ref|XP_004242335.1| | 2e-78 | PREDICTED: 40S ribosomal protein S24-1 [Solanum lycopersicum] ref|XP_010323045.1 | |||||
This contig is upended
. : . : . : . : . : . :
JMFF044O14+ ACTACTTGGAGAAACATTAAAT
____________________________________________________________
consensus ACTACTTGGAGAAACATTAAAT
. : . : . : . : . : . :
JMFF044O14+ AGCAAATCACCCAACTCAGGTTCTGACAAAAAATAAAGAAAACAACATAACAAGAGTGAT
JMFF051A11+ CCAACTCAGGTTCTGACAAAAAATAAAGAAACCAACATAACAAGAGTGAT
____________________________________________________________
consensus AGCAAATCACCCAACTCAGGTTCTGACAAAAAATAAAGAAACCAACATAACAAGAGTGAT
. : . : . : . : . : . :
JMFF044O14+ GGAAATCACTTCTTCTTCCCTCCCTTAGCGGCATCTCCAGCCTTTGTCTTCTTTACACCT
rJMFF044O14- ACTTCTTCTTCCCTCCCTTAGCGGCATCTCCAGCCTTTGTCTTCTTTACACCT
rJMFF051A11- ACTTCTTCTTCCCTCCCTTAGCGGCATCTCCAGCCTTTGTCTTCTTTACACCT
JMFN009O23+ ACTTCTTCTTCCCTCCCTTAGCGGCATCTCCAGCCTTTGTCTTCTTTACACCT
JMFF051A11+ GGAAATCACTTCTTCTTCCCTCCCTTAGCGGCATCTCCAGCCTTTGTCTTCTTTACACCT
____________________________________________________________
consensus GGAAATCACTTCTTCTTCCCTCCCTTAGCGGCATCTCCAGCCTTTGTCTTCTTTACACCT
. : . : . : . : . : . :
JMFF044O14+ CGTATTTTCTTGGTCCTGTTCTTTCTCTCCTTCATCTGTTTTCTAGATTTTTCAACCTTG
rJMFF044O14- CGAATTTTCTTGGGCCTGTTCTTTCTCTCCTTCATCTGTTTTCTAAATTTTTCAACCTTG
rJMFF051A11- CGAATTTTCTTGGCCCTGTTCTTTCTCTCCTTCATCTGTTTTCTAAATTTTTCAACCTTG
JMFN009O23+ CGTATTTTCTTGGTCCTGTTCTTTCTCTCCTTCATCTGTTTTCTAGATTTTTCAACCTTG
JMFF051A11+ CGTATTTTCTTGGTCCTGTTCTTTCTCTCCTTCATCTGTTTTCTAGATTTTTCAACCTTG
____________________________________________________________
consensus CGTATTTTCTTGGTCCTGTTCTTTCTCTCCTTCATCTGTTTTCTAGATTTTTCAACCTTG
. : . : . : . : . : . :
JMFF044O14+ GTATCCAATCCATTCCTGATCAGCCTGTACTTGGGCTCGAATTTCTTCGCATTCTCAACT
rJMFF044O14- GTATCCAATCCATTCCTGATCAGCCTGTACTTGGGCTCAAATTTCTTCGCATTCTCAACT
rJMFF051A11- GTATCCAATCCATTCCTGATCAGCCTGTACTTGGGCTCGAATTTCTTCGCATTCTCAACT
JMFN009O23+ GTATCCAATCCATTCCTGATCAGCCTGTACTTGGGCTCGAATTTCTTCGCATTCTCAACT
JMFF051A11+ GTATCCAATCCATTCCTGATCAGCCTGTACTTGGGCTCGAATTTCTTCGCATTCTCAACT
____________________________________________________________
consensus GTATCCAATCCATTCCTGATCAGCCTGTACTTGGGCTCGAATTTCTTCGCATTCTCAACT
. : . : . : . : . : . :
JMFF044O14+ GAATCATAGATCAAACCAAACCCAGTTGATTTGCCACCACCAAAGTGAGTCCTGAATTTG
rJMFF044O14- GAATCATAAATCAAACCAAACCCAGTTGATTTGCCACCACCAAAGTGAGTCCTGAATTTG
rJMFF051A11- GAATCATAGATCAAACCAAACCCAGTTGAT
JMFN009O23+ GAATCATAGATCAAACCAAACCCAGTTGATTTGCCACCACCAAAGTGAGTCCTGAATTTG
JMFF051A11+ GAATCATAGATCAAACCAAACCCAGTTGATTTGCCACCACCAAAGTGAGTCCTGAATTTG
____________________________________________________________
consensus GAATCATAGATCAAACCAAACCCAGTTGATTTGCCACCACCAAAGTGAGTCCTGAATTTG
. : . : . : . : . : . :
JMFF044O14+ AAGACAAAAATGGCATTGGGATCTTTAACCTCATACATTCTTGACAACTTATCCTTCAAT
rJMFF044O14- AAAACAAAAATGGCATTGGGATCTTTAACCTCATACATTCTTGACAACTTATCCTTCAAT
JMFN009O23+ AAGACAAAAATGGCATTGGGATCTTTAACCTCATACATTCTTGACAACTTATCCTTCAAT
JMFF051A11+ AAGACAAAAATGGCATTGGGATCTTTAACCTCATACATTCTTGACAACTTATCCTTCAAT
____________________________________________________________
consensus AAGACAAAAATGGCATTGGGATCTTTAACCTCATACATTCTTGACAACTTATCCTTCAAT
. : . : . : . : . : . :
JMFF044O14+ TCCGCCTTCGAAACATTGGCCCTACCGGGGTGGAGAACATCGATGACAAATTGCTTCCTA
rJMFF044O14- TCCGCCTTCGAAACATTGGCCCTACCGGGGTGGAGAACATCGATGACAAATTGCTTCCT
JMFN009O23+ TCCGCCTTCGAAACATTGGCCCTACCGGGGTGGAGAACATCGATGACAAATTGCTTCCTA
JMFF051A11+ TCCGCCTTCGAAACATTGGCCCTACCGGGGTGGAGAACATCGATGACAAATTGCTTCCTA
____________________________________________________________
consensus TCCGCCTTCGAAACATTGGCCCTACCGGGGTGGAGAACATCGATGACAAATTGCTTCCTA
. : . : . : . : . : . :
JMFF044O14+ GCGAGAAGGCGATTGGTCATGAACTTCCTAGTTCTGATAGTTACCGCCTTGTCAGCCAT
JMFN009O23+ GCGAGAAGGCGATTGGTCATGAACTTCCTAGTTCTGATAGTTACCGCCTTGTCAGCCAT
JMFF051A11+ GCGAGAAGGCGATTGGTCATGAACTTCCTAGTTCTGATAGTTACCGCCTTGTCAGCCATT
____________________________________________________________
consensus GCGAGAAGGCGATTGGTCATGAACTTCCTAGTTCTGATAGTTACCGCCTTGTCAGCCATT
. : . : . : . : . : . :
JMFF051A11+ TTCGTTGCTCTCTTTGCAGACTACACCGGCGACTGTCCAATTCGATCTACAAGGCACAAG
____________________________________________________________
consensus TTCGTTGCTCTCTTTGCAGACTACACCGGCGACTGTCCAATTCGATCTACAAGGCACAAG
. : . : . : . : . : . :
JMFF051A11+ CGCACTACCGCTTCCTCCGTCTCCCTTGTCTCGCGAGGCTGTGCCCTAATTTGCCAGGTC
____________________________________________________________
consensus CGCACTACCGCTTCCTCCGTCTCCCTTGTCTCGCGAGGCTGTGCCCTAATTTGCCAGGTC