Contig 006104:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010C11Sequence483006104 (5)ref|XP_009611154.1|2e-63PREDICTED: U-box domain-containing protein 45-like [Nicotiana tomentosiformis]785006104 (5)ref|XP_006482142.1|7e-75PREDICTED: U-box domain-containing protein 4-like [Citrus sinensis]
JMFF049J04Sequence610001907 (4)ref|XP_004231992.1|3e-46PREDICTED: U-box domain-containing protein 2 isoform X2 [Solanum lycopersicum]608006104 (5)ref|XP_006482142.1|3e-72PREDICTED: U-box domain-containing protein 4-like [Citrus sinensis]
JMFF050G09Sequence550006104 (5)ref|XP_006357776.1|4e-38PREDICTED: U-box domain-containing protein 4-like isoform X1 [Solanum tuberosum527006104 (5)ref|XP_006357776.1|5e-33PREDICTED: U-box domain-containing protein 4-like isoform X1 [Solanum tuberosum

Alignment

This contig is upended


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JMFF010C11-                                                      GTTTTCTTCAGTCCAAG
                      ____________________________________________________________
consensus                                                        GTTTTCTTCAGTCCAAG
 
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JMFF010C11-           AATGCGATTCTGCAAGGGCATGCGACTGCATCGCTCCTCACCCTGTCTGCTTCTCCTGTC
                      ____________________________________________________________
consensus             AATGCGATTCTGCAAGGGCATGCGACTGCATCGCTCCTCACCCTGTCTGCTTCTCCTGTC
 
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JMFF010C11-           ACGAAGCCGATTATAAGTGCTTCTGGTGCAATCCCTCTTCTCGTGGAAGTCCTAAGAAAC
                      ____________________________________________________________
consensus             ACGAAGCCGATTATAAGTGCTTCTGGTGCAATCCCTCTTCTCGTGGAAGTCCTAAGAAAC
 
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JMFF010C11-           GGGAGCCCCCCGCAGTCTAAGGCTGATGCTGTGATGGCTCTTTACAATCTGTCGTCTTAT
                      ____________________________________________________________
consensus             GGGAGCCCCCCGCAGTCTAAGGCTGATGCTGTGATGGCTCTTTACAATCTGTCGTCTTAT
 
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JMFF010C11-           GAAGGCAATATAAGTCCAATCCTTGAGACGGAACCAATTCCTGGTATAGTTAGTTTGCTG
                      ____________________________________________________________
consensus             GAAGGCAATATAAGTCCAATCCTTGAGACGGAACCAATTCCTGGTATAGTTAGTTTGCTG
 
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JMFF010C11-           AAATCCTGTAAAAGATCTTCGAAAACCGCTGAAAAATGCGTTGCCCTCATCGAATCTTTA
rJMFF010C11+                                                               ATCTTTA
                      ____________________________________________________________
consensus             AAATCCTGTAAAAGATCTTCGAAAACCGCTGAAAAATGCGTTGCCCTCATCGAATCTTTA
 
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JMFF010C11-           GTTGGTTATGAGGAGGGTAGGAGCGCGTTGACATCTGAAGAAGGCGGAGTACTCACGGTG
rJMFF010C11+          GTTGGTTATGAGGAGGGTAGGAGCGCGTTGACATCTGAAGAAGGCGGAGTACTCACGGTG
                      ____________________________________________________________
consensus             GTTGGTTATGAGGAGGGTAGGAGCGCGTTGACATCTGAAGAAGGCGGAGTACTCACGGTG
 
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JMFF010C11-           GTAGAAGTGCTCGAAAGCGGGTCCCTTCAGAGCCGAGAGCATGCTCTCGGAGCCCTTTTG
rJMFF049J04+                                  CTTCAGAGCCGAGAGCATGCTCTCGGAGCCCTTTTG
rJMFF010C11+          GTAGAAGTGCTCGAAAGCGGGTCCCTTCAGAGCCGAGAGCATGCTCTCGGAGCCCTTTTG
                      ____________________________________________________________
consensus             GTAGAAGTGCTCGAAAGCGGGTCCCTTCAGAGCCGAGAGCATGCTCTCGGAGCCCTTTTG
 
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JMFF010C11-           ACAATGTGTGAGAGTGACCGGTGTAAATATAGGGAACCGATTCTTA              
rJMFF049J04+          ACAATGTGTGAGAGTGACCGGTGTAAATATAGGGAACCGATTCTTAGAGAAGGCGTAATC
rJMFF010C11+          ACAATGTGTGAGAGTGACCGGTGTAAATATAGGGAACCGATTCTTAGAGAAGGCGTAATC
                      ____________________________________________________________
consensus             ACAATGTGTGAGAGTGACCGGTGTAAATATAGGGAACCGATTCTTAGAGAAGGCGTAATC
 
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rJMFF049J04+          CCCGGGCTCCTAGAGCTGACGGTTCAGGGAACACCAAAGTCTCAAGCAAAGGCACAAACG
rJMFF010C11+          CCCGGGCTCCTAGAGCTGACGGTTCAGGGAACACCAAAGTCTCAAGCAAAGGCACAAACG
JMFF050G09-                                                             GGCACAAACG
                      ____________________________________________________________
consensus             CCCGGGCTCCTAGAGCTGACGGTTCAGGGAACACCAAAGTCTCAAGCAAAGGCACAAACG
 
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rJMFF049J04+          CTCCTAAGATTGCTGAGAGACTCCCCGTTCCCGAGGTCCGAGCTTCAGGCTGACACGCTA
rJMFF010C11+          CTCCTAAGATTGCTGAGAGACTCCCCGTTCCCGAGGTCCGAGCTTCAGGCTGACACGCTA
rJMFF050G09+                       TGAGAGACTCCCCGTTCCCGAGGTCCGAGCTTCAGGCTGACACGCTA
JMFF050G09-           CTCCTAAGATTGCTGAGAGACTCCCCGTTCCCGAGGTCCGAGCTTCAGGCTGACACGCTA
                      ____________________________________________________________
consensus             CTCCTAAGATTGCTGAGAGACTCCCCGTTCCCGAGGTCCGAGCTTCAGGCTGACACGCTA
 
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rJMFF049J04+          GAGAACATCGTTAGCAACCTCATATCGCAGATAGACGGGGAGGAGCAACCCGGGAAGGCA
rJMFF010C11+          GAGAACATCGTTAGCAACCTCATATCGCAGATAGACGGGGAGGAGCAACCCGGGAAGGCA
rJMFF050G09+          GAGAACATCGTTAGCAACCTCATATCGCAGATAGACGGGGAGGAGCAACCCGGGAAGGCA
JMFF050G09-           GAGAACATCGTTAGCAACCTCATATCGCAGATAGACGGGGAGGAGCAACCCGGGAAGGCA
                      ____________________________________________________________
consensus             GAGAACATCGTTAGCAACCTCATATCGCAGATAGACGGGGAGGAGCAACCCGGGAAGGCA
 
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rJMFF049J04+          AAGGAGATGCTCGCTGAAATGGTGCAAGTTAGCATGGAGCAAAGCCTGAGGCATTTACAG
rJMFF010C11+          AAGGAGATGCTCGCTGAAATGGTGCAAGTTAGCATGGAGCAAAGCCTGAGGCATTTACAG
rJMFF050G09+          AAGGAGATGCTCGCTGAAATGGTGCAAGTTAGCATTGAGCAAAGCCTGAGGCATTTACAG
JMFF050G09-           AAGGAGATGCTCGCTGAAATGGTGCAAGTTAGCATTGAGCAAAGCCTGAGGCATTTACAG
                      ____________________________________________________________
consensus             AAGGAGATGCTCGCTGAAATGGTGCAAGTTAGCATTGAGCAAAGCCTGAGGCATTTACAG
 
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rJMFF049J04+          CAAAGGGCGCTGGTGTGCACCCCGGGCGATCTGTCTGTCACTACCCGCACCTCGAAAATT
rJMFF010C11+          CAAAGGGCGCTGGTGTGCACCCCGGGCGATCTGTCTGTCACTACCCGCACCTCGAAAATT
rJMFF050G09+          CAAAGGGCGCTGGTGTGCACCCCGGGCGATCTGTCTGTCACTACCCGCACCTCGAAAATT
JMFF050G09-           CAAAGGGCGCTGGTGTGCACCCCGGGCGATCTGTCTGTCACTACCCGCACCTCGAAAATT
                      ____________________________________________________________
consensus             CAAAGGGCGCTGGTGTGCACCCCGGGCGATCTGTCTGTCACTACCCGCACCTCGAAAATT
 
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rJMFF049J04+          CCTTCGAAATGAATCCGTTTCACAACATCATCCCACGCTTTCTTCCCTTATTACCGGGGG
rJMFF010C11+          CCTTCGAAATGAATCCGTTTCACAACATCATCCCACGCTTTCTTCCCTTATTACCGGGGG
rJMFF050G09+          CCTTCGAAATGAATCCGTTTCACAACATCATCCCACGCTTTCTTCCCTTATTACCGGGGG
JMFF050G09-           CCTTCGAAATGAATCCGTTTCACAACATCATCCCACGCTTTCTTCCCTTATTACCGGGGG
                      ____________________________________________________________
consensus             CCTTCGAAATGAATCCGTTTCACAACATCATCCCACGCTTTCTTCCCTTATTACCGGGGG
 
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rJMFF049J04+          TTGTCTTCCCGCTCCCTCTCTTGTAATTGCGAGCTTTGTGGTATCAGTTTTCTGTGCTAG
rJMFF010C11+          TTGTCTTCCCGCTCCCTCTCTTGTAATTGCGAGCTTTGTGGTATCAGTTTTCTGTGCTAG
rJMFF050G09+          TTGTCTTCCCGCTCCCTCTCTTGTAATTGCGAGCTTTGTGGTATCAGTTTTCTGTGCTAG
JMFF050G09-           TTGTCTTCCCGCTCCCTCTCTTGTAATTGCGAGCTTTGTGGTATCAGTTTTCTGTGCTAG
                      ____________________________________________________________
consensus             TTGTCTTCCCGCTCCCTCTCTTGTAATTGCGAGCTTTGTGGTATCAGTTTTCTGTGCTAG
 
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rJMFF049J04+          GAAATAAAGATCTCTCTATAGTAAAACAATGCCAGTCCAGGCCCCTTGTTATGGGTATCT
rJMFF010C11+          GAAATAAAGATCTCTCTATAGTAAAACAATGCCAGTCCAGGCCCCTTGTTATGGGTATCT
rJMFF050G09+          GAAATAAAGATCTCTCTATAGTAAAACAATGCCAGTCCAGGCCCCTTGTTATGGGTATCT
JMFF050G09-           GAAATAAAGATCTCTCTATAGTAAAACAATGCCAGTCCAGGCCCCTTGTTATGGGTATCT
                      ____________________________________________________________
consensus             GAAATAAAGATCTCTCTATAGTAAAACAATGCCAGTCCAGGCCCCTTGTTATGGGTATCT
 
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rJMFF049J04+          GGTGACTGGTCGATGTCGATAAATCTAAA                               
rJMFF010C11+          GGTGACTGGTCGATGTCGATAAATCTAAAAGGAAATCACAGTGTTTGTAAGCTTAGCTTT
rJMFF050G09+          GGTGACTGGTCGATGTCGATAAATCTAAAAGGAAATCACAGTGTTTGTAAGCTTAGCTTT
JMFF050G09-           GGTGACTGGTCGATGTCGATAAATCTAAAAGGAAATCACAGTGTTTGTAAGCTTAGCTTT
                      ____________________________________________________________
consensus             GGTGACTGGTCGATGTCGATAAATCTAAAAGGAAATCACAGTGTTTGTAAGCTTAGCTTT
 
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rJMFF010C11+          TAACATGGCTTTTGTAACATATACTGTGTATTGAAGGTTACATGATCTGTGAGGTTTA  
rJMFF050G09+          TAACATGGCTTTTGTAACATATACTGTGTATTGAAGGTTACATGATCTGTGAGGTTTA  
JMFF050G09-           TAACATGGCTTTTGTAACATATACTGTGTATTGAAGGTTACATGATCTGTGAGGTTTATT
                      ____________________________________________________________
consensus             TAACATGGCTTTTGTAACATATACTGTGTATTGAAGGTTACATGATCTGTGAGGTTTATT