Contig 006100:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033A12Sequence559006100 (4)ref|XP_010653096.1|111PREDICTED: uncharacterized protein LOC100246776 [Vitis vinifera] ref|XP_00226473606006100 (4)ref|XP_010653096.1|111PREDICTED: uncharacterized protein LOC100246776 [Vitis vinifera] ref|XP_00226473
JMFF049M06Sequence639006100 (4)ref|XP_010653096.1|111PREDICTED: uncharacterized protein LOC100246776 [Vitis vinifera] ref|XP_00226473603006100 (4)ref|XP_010653096.1|111PREDICTED: uncharacterized protein LOC100246776 [Vitis vinifera] ref|XP_00226473

Alignment

This contig is upended


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rJMFF049M06-                             CTATAATTCATCAGATTATAACATAAAATACTCTTGTATAC
rJMFF033A12-                                                         TACTCTTGTATAC
JMFF049M06+                                ATAATTCATCAGATTATAACATAAAATACTCTTGTATAC
                      ____________________________________________________________
consensus                                CTATAATTCATCAGATTATAACATAAAATACTCTTGTATAC
 
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rJMFF049M06-          ATCTGAATTTCCTCAGGAGCTCAGAACCTATTGAGGAACACTATCTATGTACTACTATTC
rJMFF033A12-          ATCTGAATTTCCTCAGGAGCTCAGAACCTATTGAGGAACACTATCTATGTACTACTATTC
JMFF033A12+                                                    TATCTATGTACTACTATTC
JMFF049M06+           ATCTGAATTTCCTCAGGAGCTCAGAACCTATTGAGGAACACTATCTATGTACTACTATTC
                      ____________________________________________________________
consensus             ATCTGAATTTCCTCAGGAGCTCAGAACCTATTGAGGAACACTATCTATGTACTACTATTC
 
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rJMFF049M06-          ATTTTCCTTTCTTTATAAACTTCTTTTCATGCTTTCCTGAAATTGTACCAGACATGTACT
rJMFF033A12-          ATTTTCCTTTCTTTATAAACTTCTTTTCATGCTTTCCTGAAATTGTACCAGACATGTACT
JMFF033A12+           ATTTTCCTTTCTTTATAAACTTCTTTTCATGCTTTCCTGAAATTGTACCAGACATGTACT
JMFF049M06+           ATTTTCCTTTCTTTATAAACTTCTTTTCATGCTTTCCTGAAATTGTACCAGACATGTACT
                      ____________________________________________________________
consensus             ATTTTCCTTTCTTTATAAACTTCTTTTCATGCTTTCCTGAAATTGTACCAGACATGTACT
 
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rJMFF049M06-          ACTTGTTAGTATGCAACAATCATTTGTATGATGGCTAGACAGCACAGGAGGTGCAGTTGC
rJMFF033A12-          ACTTGTTAGTATGCAACAATCATTTGTATGATGGCTAGACAGCACAGGAGGTGCAGTTGC
JMFF033A12+           ACTTGTTAGTATGCAACAATCATTTGTATGATGGCTAGACAGCACAGGAGGTGCAGTTGC
JMFF049M06+           ACTTGTTAGTATGCAACAATCATTTGTATGATGGCTAGACAGCACAGGAGGTGCAGTTGC
                      ____________________________________________________________
consensus             ACTTGTTAGTATGCAACAATCATTTGTATGATGGCTAGACAGCACAGGAGGTGCAGTTGC
 
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rJMFF049M06-          AAGTCTTGGGCACAAAAGCGCAGACTCCAAAAGGCTTGTTTGGAAGCTGGCAGTCAATAC
rJMFF033A12-          AAGTCTTGGGCACAAAAGCGCAGACTCCAAAAGGCTTGTTTGGAAGCTGGCAGTCAATAC
JMFF033A12+           AAGTCTTGGGCACAAAAGCGCAGACTCCAAAAGGCTTGTTTGGAAGCTGGCAGTCAATAC
JMFF049M06+           AAGTCTTGGGCACAAAAGCGCAGACTCCAAAAGGCTTGTTTGGAAGCTGGCAGTCAATAC
                      ____________________________________________________________
consensus             AAGTCTTGGGCACAAAAGCGCAGACTCCAAAAGGCTTGTTTGGAAGCTGGCAGTCAATAC
 
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rJMFF049M06-          CGAAGCAGCAAGGCATGGTAGAGCAGGTGTTCGGGTCTGCAGCTGACACACAACACTTGC
rJMFF033A12-          CGAAGCAGCAAGGCATGGTAGAGCAGGTGTTCGGGTCTGCAGCTGACACACAACACTTGC
JMFF033A12+           CGAAGCAGCAAGGCATGGTAGAGCAGGTGTTCGGGTCTGCAGCTGACACACAACACTTGC
JMFF049M06+           CGAAGCAGCAAGGCATGGTAGAGCAGGTGTTCGGGTCTGCAGCTGACACACAACACTTGC
                      ____________________________________________________________
consensus             CGAAGCAGCAAGGCATGGTAGAGCAGGTGTTCGGGTCTGCAGCTGACACACAACACTTGC
 
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rJMFF049M06-          ACGCCAAACACAGCTGGAAAGGCGCCAACCGCCTCCTCCCGGCTGATTCCATGTCAACTC
rJMFF033A12-          ACGCCAAACACAGCTGGAAAGGCGCCAACCGCCTCCTCCCGGCTGATTCCATGTCAACTC
JMFF033A12+           ACGCCAAACACAGCTGGAAAGGCGCCAACCGCCTCCTCCCGGCTGATTCCATGTCAACTC
JMFF049M06+           ACGCCAAACACAGCTGGAAAGGCGCCAACCGCCTCCTCCCGGCTGATTCCATGTCAACTC
                      ____________________________________________________________
consensus             ACGCCAAACACAGCTGGAAAGGCGCCAACCGCCTCCTCCCGGCTGATTCCATGTCAACTC
 
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rJMFF049M06-          TGAACTCCGGGATGGTGGTCAATGGCTGCAGCTGTATTCCGGCCACTCCCGGTGATTCTG
rJMFF033A12-          TGAACTCCGGGATGGTGGTCAATGGCTGCAGCTGTATTCCGGCCACTCCCGGTGATTCTG
JMFF033A12+           TGAACTCCGGGATGGTGGTCAATGGCTGCAGCTGTATTCCGGCCACTCCCGGTGATTCTG
JMFF049M06+           TGAACTCCGGGATGGTGGTCAATGGCTGCAGCTGTATTCCGGCCACTCCCGGTGATTCTG
                      ____________________________________________________________
consensus             TGAACTCCGGGATGGTGGTCAATGGCTGCAGCTGTATTCCGGCCACTCCCGGTGATTCTG
 
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rJMFF049M06-          ATGGCTCATCATCAACTGCATGAGATTGAGAGGATCCTTCAAGCATAACCAGGTGGAAGA
rJMFF033A12-          ATGGCTCATCATCAACTGCATGAGATTGAGAGGATCCTTCAAGCATAACCAGGTGGAAGA
JMFF033A12+           ATGGCTCATCATCAACTGCATGAGATTGAGAGGATCCTTCAAGCATAACCAGGTGGAAGA
JMFF049M06+           ATGGCTCATCATCAACTGCATGAGATTGAGAGGATCCTTCAAGCATAACCAGGTGGAAGA
                      ____________________________________________________________
consensus             ATGGCTCATCATCAACTGCATGAGATTGAGAGGATCCTTCAAGCATAACCAGGTGGAAGA
 
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rJMFF049M06-          TGAAGAGGAGCAGTAATAAGAAGAGGATTAGGATTGGATCTTTGGCACGCTTGAGACCTG
rJMFF033A12-          TGAAGAGGAGCAGTAATAAGAAGAGGATTAGGATTGGATCTTTGGCACGCTTGAGACCTG
JMFF033A12+           TGAAGAGGAGCAGTAATAAGAAGAGGATTAGGATTGGATCTTTGGCACGCTTGAGACCTG
JMFF049M06+           TGAAGAGGAGCAGTAATAAGAAGAGGATTAGGATTGGATCTTTGGCACGCTTGAGACCTG
                      ____________________________________________________________
consensus             TGAAGAGGAGCAGTAATAAGAAGAGGATTAGGATTGGATCTTTGGCACGCTTGAGACCTG
 
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rJMFF049M06-          ATTGATGATTCATGGTTTGGTT                                      
rJMFF033A12-          ATTGATGATTCATGGTTTGGTTTGGCAGAGAGAAAAGAGGGACTGAGAAAATT       
JMFF033A12+           ATTGATGATTCATGGTTTGGTTTGGCAGAGAGAAAAGAGGGACTGAGAAAATT       
JMFF049M06+           ATTGATGATTCATGGTTTGGTTTGGCAGAGAGAAAAGAGGGACTGAGAAAATTAAAGATT
                      ____________________________________________________________
consensus             ATTGATGATTCATGGTTTGGTTTGGCAGAGAGAAAAGAGGGACTGAGAAAATTAAAGATT