Contig 006085:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046O07Sequence513006085 (4)ref|XP_009796101.1|2e-64PREDICTED: serine/threonine-protein kinase ATG1 isoform X1 [Nicotiana sylvestri635004134 (5)ref|XP_009620481.1|208PREDICTED: serine/threonine-protein kinase ATG1 [Nicotiana tomentosiformis]
JMSF005M13Sequence381006085 (4)ref|XP_010325831.1|1e-38PREDICTED: serine/threonine-protein kinase ATG1 isoform X2 [Solanum lycopersicu
JMSF011M15Sequence217006085 (4)ref|XP_009796102.1|2e-11PREDICTED: serine/threonine-protein kinase ATG1 isoform X2 [Nicotiana sylvestri778004134 (5)ref|XP_009796101.1|1e-112PREDICTED: serine/threonine-protein kinase ATG1 isoform X1 [Nicotiana sylvestri
JMSF040N14Sequence681006085 (4)ref|XP_009796101.1|3e-114PREDICTED: serine/threonine-protein kinase ATG1 isoform X1 [Nicotiana sylvestri877004134 (5)ref|XP_009796102.1|5e-127PREDICTED: serine/threonine-protein kinase ATG1 isoform X2 [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF040N14+                                     TGCATCATATTTCTGAAGTTGCATAATTTCAGGA
                      ____________________________________________________________
consensus                                       TGCATCATATTTCTGAAGTTGCATAATTTCAGGA
 
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JMSF040N14+           GCCATGTATAGTGGTGAACCACATAAGGTTTCTGCAAGGCCTCTAGGTTGCAAAGACCTT
                      ____________________________________________________________
consensus             GCCATGTATAGTGGTGAACCACATAAGGTTTCTGCAAGGCCTCTAGGTTGCAAAGACCTT
 
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JMSF040N14+           GCAAATCCAAAATCAGCAATCTTTAAAACAGCATTGTCATCATTTACTGATAAGAGGAGA
                      ____________________________________________________________
consensus             GCAAATCCAAAATCAGCAATCTTTAAAACAGCATTGTCATCATTTACTGATAAGAGGAGA
 
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JMSF040N14+           TTCTGTGGTTTTAAGTCCCGATGTATTAAGTTGTTCTCACGAAGAACTTTTAAGCCCGAT
JMFF046O07+                                     TAAGTTGTTCTCACGAAGTACTTNTAAGCCCGAT
                      ____________________________________________________________
consensus             TTCTGTGGTTTTAAGTCCCGATGTATTAAGTTGTTCTCACGAAGTACTTTTAAGCCCGAT
 
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JMSF040N14+           GCTAGCTGCTGCATAAAATGTTTTGCAGTTGCTTCTGGGATTCTCCCATTGCGTTGTTGG
JMFF046O07+           GCTAGCTGCTGCATAAAAGGTCTTGCAGTTGCTTCTGGGATTCTCCCATGGCGTTGTTGG
                      ____________________________________________________________
consensus             GCTAGCTGCTGCATAAAATGTTTTGCAGTTGCTTCTGGGATTCTCCCATTGCGTTGTTGG
 
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JMSF005M13+                                    TACAGTANTCCAACACTATATAAATCTTTTCCAGG
JMSF040N14+           ACGTAGATTGAAAGATCACCTCCTCTACAGTACTCCAACACTATATAAATC-TTTCCAGG
JMFF046O07+           ACGTAGATTGAAAGATCACCTCGTCTACAGTACTCCAACACTATATAAATC-TTTCGAGG
                      ____________________________________________________________
consensus             ACGTAGATTGAAAGATCACCTCGTCTACAGTACTCCAACACTATATAAATC-TTTCCAGG
 
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JMSF005M13+           TTCCTGGATCATGTCGTGCAGGTGGATAATGTTAGGATGATTGATCTTCCGGAGGATAAC
JMSF040N14+           TTCCTGGATCATGTCGTGCAGGTGGATAATGTTAGGATGATTGATCTTCCGGAGGATAAC
JMFF046O07+           TTCCTGGATCATGTCGTGCAGGTGGATAATGTTAGGATGATTGATCTTCCGGAGGATAAC
                      ____________________________________________________________
consensus             TTCCTGGATCATGTCGTGCAGGTGGATAATGTTAGGATGATTGATCTTCCGGAGGATAAC
 
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JMSF005M13+           AATCTCAGACATGAGGCTCTCTTGGAGTTTGGAGTTAAGCCGAGCTGTGACGATCTCCTT
JMSF040N14+           AATCTCAGACATGAGGCTCTCTTGGAGTTTGGAGTTAAGCCGAGCTGTGACGATCTCCTT
JMFF046O07+           AATCTCAGACATGAGGCTCTCTTGGAGTTTGGAGTTAAGCCGAGCTGTGACGATCTCCTT
                      ____________________________________________________________
consensus             AATCTCAGACATGAGGCTCTCTTGGAGTTTGGAGTTAAGCCGAGCTGTGACGATCTCCTT
 
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JMSF005M13+           GATGGCCACCTCGGTGCCGTGGTCTCGGTGCCGCGCGTGCCACACCGTCGAGTACGACCC
JMSF011M15+                      CGGTGCTGTGGTCTCGGTGCCGCGCGTGCCACACCGTCGAGTACGACCC
JMSF040N14+           GATGGCCACCTCGGTGCTGTGGTCTCGGTGCCGCGCGTGCCACACCGTCGAGTACGACCC
JMFF046O07+           GATGGCCACCTCGGTGCGGTGGTCTCGGTGGCGCGCGTGCCAGACCGTCGAGTACGAACC
                      ____________________________________________________________
consensus             GATGGCCACCTCGGTGCTGTGGTCTCGGTGCCGCGCGTGCCACACCGTCGAGTACGACCC
 
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JMSF005M13+           GCTCCCAACCTGCTTCCCAACCAAATAATCGCCCACCATGAACCTCCCAGTTCCACCACC
JMSF011M15+           GCTCCCAACCTGCTTCCCAACCAAATAATCGCCCACCATGAACCTCCCAGTTCCACCACC
JMSF040N14+           GCTCCCAACCTGCTTCCCAACCAAATAATCGCCCACCATGAACCTCCCAGTTCCACCACC
JMFF046O07+           GCTCCCAACCTGCTTCCCAACCAAATAATCGCCCACCATGAACCTCCCAGTTCCACCACC
                      ____________________________________________________________
consensus             GCTCCCAACCTGCTTCCCAACCAAATAATCGCCCACCATGAACCTCCCAGTTCCACCACC
 
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JMSF005M13+           TCTGCTGCCCATCGATTGAGCCATCCCCCGAAGCCAAACCCTAGAATTCCGAGCAATGCA
JMSF011M15+           TCTGCTGCCCATCGATTGAGCCATCCCCCGAAGCCAAACCCTAGAATTCCGAGCAATGCA
JMSF040N14+           TCTGCTGCCCATCGATTGAGCCATCCCCCGAAGCCAAACCCTAGAATTCCGAGCAATGCA
JMFF046O07+           TCTGCTGCCCATCGATTGAGCCATCCCCCGAAGCCAAACCCTAGAATTCCGAGCAATGCA
                      ____________________________________________________________
consensus             TCTGCTGCCCATCGATTGAGCCATCCCCCGAAGCCAAACCCTAGAATTCCGAGCAATGCA
 
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JMSF005M13+           ACAGAACCTTATCCAAGGACAATTTCTCAGCTAAGACAAAGGAAC               
JMSF011M15+           ACAGAACCTTATCCAAGGACAATTTCTCAGCTAAGACAAAGGAAC               
JMSF040N14+           ACAGAACCTTATCCAAGGACAATTTCTCAGCTAAGACAAAGGAAC               
JMFF046O07+           ACAGAACCTTATCCAAGGACAATTTCTCAGCTAAGACAAAGGAACACGAAAGCGAAGATT
                      ____________________________________________________________
consensus             ACAGAACCTTATCCAAGGACAATTTCTCAGCTAAGACAAAGGAACACGAAAGCGAAGATT