Contig 006084:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037O23Sequence565006084 (5)ref|XP_007210357.1|3e-44hypothetical protein PRUPE_ppa001580mg [Prunus persica] gb|EMJ11556.1| hypotheti713005534 (8)ref|XP_009603996.1|5e-38PREDICTED: CSC1-like protein At1g32090 [Nicotiana tomentosiformis]
JMFF046K16Sequence543006084 (5)ref|XP_007210357.1|4e-40hypothetical protein PRUPE_ppa001580mg [Prunus persica] gb|EMJ11556.1| hypotheti532005534 (8)ref|XP_009603996.1|5e-26PREDICTED: CSC1-like protein At1g32090 [Nicotiana tomentosiformis]
JMFS150F08Sequence553006084 (5)ref|XP_009603996.1|2e-46PREDICTED: CSC1-like protein At1g32090 [Nicotiana tomentosiformis]
JMSF020I22Sequence660006084 (5)ref|XP_009603996.1|9e-97PREDICTED: CSC1-like protein At1g32090 [Nicotiana tomentosiformis]735005534 (8)ref|XP_009603996.1|3e-41PREDICTED: CSC1-like protein At1g32090 [Nicotiana tomentosiformis]
JMSF020K11Sequence686006084 (5)ref|XP_009603996.1|3e-108PREDICTED: CSC1-like protein At1g32090 [Nicotiana tomentosiformis]700011272 (3)emb|CDP06865.1|9e-88unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF020K11+                         AACGGCCAGATTGATGCGGTACATTTCTTACAATAACCGTAAACTG
                      ____________________________________________________________
consensus                           AACGGCCAGATTGATGCGGTACATTTCTTACAATAACCGTAAACTG
 
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JMSF020K11+           TTCTGCTTTCGTGCCTTGTGAAGCCAAAAACTTTAGTCTCATCGACGCCACTCGGCCATA
JMSF020I22+                   TCGTGCCTTGTGAAGCCAAAAACTTTAGTCTCATCGACGCCACTCGGCCATA
                      ____________________________________________________________
consensus             TTCTGCTTTCGTGCCTTGTGAAGCCAAAAACTTTAGTCTCATCGACGCCACTCGGCCATA
 
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JMSF020K11+           TTCCTTGTACAGAATAAAGCACGTCCAAAACGTGAACAAGTATTCCATTCCTATGTGCAC
JMSF020I22+           TTCCTTGTACAGAATAAAGCACGTCCAAAACGTGAACAAGTATTCCATTCCTATGTGCAC
                      ____________________________________________________________
consensus             TTCCTTGTACAGAATAAAGCACGTCCAAAACGTGAACAAGTATTCCATTCCTATGTGCAC
 
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JMSF020K11+           AAAGAACTTGAGAGATTTGGGACTAATATTGGATATGGACAGCTTATCAACATCGCTCAC
JMSF020I22+           AAAGAACTTGAGAGATTTGGGACTAATATTGGATATGGACAGCTTATCAACATCGCTCAC
                      ____________________________________________________________
consensus             AAAGAACTTGAGAGATTTGGGACTAATATTGGATATGGACAGCTTATCAACATCGCTCAC
 
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JMSF020K11+           GACCAAATCTTTGCTAAGGAAAAACAATGTTCCGCCTGAGACGTTGACCGGGATAAGAAC
JMSF020I22+           GACCAAATCTTTGCTAAGGAAAAACAATGTTCCGCCTGAGACGTTGACCGGGATAAGAAC
                      ____________________________________________________________
consensus             GACCAAATCTTTGCTAAGGAAAAACAATGTTCCGCCTGAGACGTTGACCGGGATAAGAAC
 
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JMSF020K11+           CAAAAGCACCACAATAGCTGTTGGCCCGAATATTTTTAGGCCAAGAGTATAAATCCTCAA
JMSF020I22+           CAAAAGCACCACAATAGCTGTTGGCCCGAATATTTTTAGGCCAAGAGTATAAATCCTCAA
JMFS150F08+                                TGGCCCGAATATTTTTAGGCCAAGAGTATAAATCCTCAA
JMFF037O23+                                             TTTAGGCCAAGAGTATAAATCCTCAA
JMFF046K16+                                                                    CAA
                      ____________________________________________________________
consensus             CAAAAGCACCACAATAGCTGTTGGCCCGAATATTTTTAGGCCAAGAGTATAAATCCTCAA
 
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JMSF020K11+           GAAAACAGCAGAGTCAAGGCCAGCATGGGTGATAATCTCAGACTCACTCATCTTCATAGC
JMSF020I22+           GAAAACAGCAGAGTCAAGGCCAGCATGGGTGATAATCTCAGACTCACTCATCTTCATAGC
JMFS150F08+           GAAAACAGCAGAGTTAAGGCCAGCATGGGTGATAATCTCAGACTCACTCATCTTCATAGC
JMFF037O23+           GAAAACAGCAGAGTCAAGGCCAGCATGGGTGATAATCTCAGACTCACTCATCTTCATAGC
JMFF046K16+           GAAAACAGCAGAGTCAAGGCCAGCATGGGTGATAATCTCAGACTCACTCATCTTCATAGC
                      ____________________________________________________________
consensus             GAAAACAGCAGAGTCAAGGCCAGCATGGGTGATAATCTCAGACTCACTCATCTTCATAGC
 
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JMSF020K11+           CTGAGGCATCCAGCTGAGAAAAGTGAGGTAAGTCTTGAGATTGAGGTTCACAAATTTGTG
JMSF020I22+           CTGAGGCATCCAGCTGAGAAAAGTGAGGTAAGTCTTGAGATTGAGGTTCACAAATTTGTG
JMFS150F08+           CTGAGGCATCCAGCTGAGAAAAGTGAGGTAAGTCTTGAGATTGAGGTTCACAAATTTGTG
JMFF037O23+           CTGAGGCATCCAGCTGAGAAAAGTGAGGTAAGTCTTGAGATTGAGGTTCACAAATTTGTG
JMFF046K16+           CTGAGGCATCCAGCTGAGAAAAGTGAGGTAAGTCTTGAGATTGAGGTTCACAAATTTGTG
                      ____________________________________________________________
consensus             CTGAGGCATCCAGCTGAGAAAAGTGAGGTAAGTCTTGAGATTGAGGTTCACAAATTTGTG
 
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JMSF020K11+           CACAAAGTTGCCTCTGAGCCTAGGGCTATTCCTCTTGCCCTCAATATACCATTTGGGGAA
JMSF020I22+           CACAAAGTTGCCTCTGAGCCTAGGGCTATTCCTCTTGCCCTCAATATACCATTTGGGGAA
JMFS150F08+           CACAAAGTTGCCTCTGAGCCTAGGGCTATTCCTCTTGCCCTCAATATACCATTTGGGGAA
JMFF037O23+           CACAAAGTTGCCTCTGAGCCTAGGGCTATTCCTCTTGCCCTCAATATACCATTTGGGGAA
JMFF046K16+           CACAAAGTTGCCTCTGAGCCTAGGGCTATTCCTCTTGCCCTCAATATACCATTTGGGGAA
                      ____________________________________________________________
consensus             CACAAAGTTGCCTCTGAGCCTAGGGCTATTCCTCTTGCCCTCAATATACCATTTGGGGAA
 
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JMSF020K11+           GTAAACCCTGTCATTCACAGGCTGAATTCTCAGAAGAGCAAAGGCCAGCAAGAAGGAGAA
JMSF020I22+           GTAAACCCTGTCATTCACAGGCTGAATTCTCAGAAGAGCAAAGGCCAGCAAGAAGGAGAA
JMFS150F08+           GTAAACCCTGTCATTCACAGGCTGAATTCTCAGAAGAGCAAAGGCCAGCAAGAAGGAGAA
JMFF037O23+           GTAAACCCTGTCATTCACAGGCTGAATTCTCAGAAGAGCAAAGGCCAGCAAGAAGGAGAA
JMFF046K16+           GTAAACCCTGTCATTCACAGGCTGAATTCTCAGAAGAGCAAAGGCCAGCAAGAAGGAGAA
                      ____________________________________________________________
consensus             GTAAACCCTGTCATTCACAGGCTGAATTCTCAGAAGAGCAAAGGCCAGCAAGAAGGAGAA
 
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JMSF020K11+           AGCAGTGAGTATATTGATGAGAGCTGACACCCCAATATCCCCAAGAGTTGCCATGCCTCA
JMSF020I22+           AGCAGTGAGTATATTGATGAGAGCTGACACCCCAATATCCCCAAGAGTTGCCATGCCTCA
JMFS150F08+           AGCAGTGAGTATATTGATGAGAGCTGACACCCCAATATCCCCAAGAGTTGCCATGCCTCA
JMFF037O23+           AGCAGTGAGTATATTGATGAGAGCTGACACCCCAATATCCCCAAGAGTTGCCATGCCTCA
JMFF046K16+           AGCAGTGAGTATATTGATGAGAGCTGACACCCCAATATCCCCAAGAGTTGCCATGCCTCA
                      ____________________________________________________________
consensus             AGCAGTGAGTATATTGATGAGAGCTGACACCCCAATATCCCCAAGAGTTGCCATGCCTCA
 
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JMSF020K11+           ACACAATCAAAGGTGGTGTTTTTGAAGAAAGTTTGGTAT                     
JMSF020I22+           ACACAATCAAAGGTGGTGTTTTTGAAGAAAGTTTGGTATAAAAAATGAGCACTTTCTTCA
JMFS150F08+           ACACAATCAAAGGTGGTGTTTTTGAAGAAAGTTTGGTATAAAAAATGAGCACTTTCTTTA
JMFF037O23+           ACACAATCAAAGGTGGTGTTTTTGAAGAAAGTTTGGTATAAAAAATGAGCACTTTCTTCA
JMFF046K16+           ACACAATCAAAGGTGGTGTTTTTGAAGAAAGTTTGGTATAAAAAATGAGCACTTTCTTCA
                      ____________________________________________________________
consensus             ACACAATCAAAGGTGGTGTTTTTGAAGAAAGTTTGGTATAAAAAATGAGCACTTTCTTCA
 
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JMSF020I22+           GTTTCT                                                      
JMFS150F08+           GTTTCTTGAATTAATATTGCCCAGTATTAAATTAAATGAAGAAAGGAATTTTTTTTCTTG
JMFF037O23+           GTTTCTTGAATTAATATTGCCCAGTATTAAATTAAATGAAGAAAGGAATTTTTTTTCTTG
JMFF046K16+           GTTTCTTGAATTAATATTGCCCAGTATTAAATTAAATGAAGAAAGGAATTTTTTTTCTTG
                      ____________________________________________________________
consensus             GTTTCTTGAATTAATATTGCCCAGTATTAAATTAAATGAAGAAAGGAATTTTTTTTCTTG
 
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JMFS150F08+           AGAGTTGGTTGATACAGTACGCATTGGCCTAGTATCCCCCTTTTGTATTCAAGCATATGG
JMFF037O23+           AGAGTTGGTTGATACAGTACGCATTGGCCTAGTATCCCCCTTTTGTATTCAAGCATATGG
JMFF046K16+           AGAGTTGGTTGATACAGTACGCATTGGCCTAGTATCCCCCTTTTGTATTCAAGCATATGG
                      ____________________________________________________________
consensus             AGAGTTGGTTGATACAGTACGCATTGGCCTAGTATCCCCCTTTTGTATTCAAGCATATGG
 
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JMFS150F08+           GT-GTTTGGGAATATATTCTACGGATTGATATTGT                         
JMFF037O23+           GT-GTTTGGGAATATATTCTACGGATTGATATTGTGTATTGCTCTGCCAATAACAAAATT
JMFF046K16+           GTGGTTTGGGAATATATTCTACGGATTGATATTGTGTATTGCTCTGCCAATAACAAAATT
                      ____________________________________________________________
consensus             GT-GTTTGGGAATATATTCTACGGATTGATATTGTGTATTGCTCTGCCAATAACAAAATT