| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011F11 | Sequence | 521 | 006083 (4) | ref|XP_004235329.1| | 7e-45 | PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop | 727 | 008358 (4) | ref|XP_009776009.1| | 1e-45 | PREDICTED: bromodomain-containing protein DDB_G0280777 [Nicotiana sylvestris] |
| JMFF019I24 | Sequence | 493 | 006083 (4) | ref|XP_004235329.1| | 4e-39 | PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop | 176 | 008358 (4) | |||
| JMFF040L22 | Sequence | 495 | 006083 (4) | ref|XP_004235329.1| | 5e-38 | PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop | 739 | 008358 (4) | ref|XP_009776009.1| | 2e-54 | PREDICTED: bromodomain-containing protein DDB_G0280777 [Nicotiana sylvestris] |
| JMFF046I05 | Sequence | 634 | 006083 (4) | ref|XP_004235329.1| | 5e-40 | PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop | 604 | 008358 (4) | ref|XP_004235329.1| | 5e-26 | PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop |
This contig is upended
. : . : . : . : . : . :
JMFF019I24+ GTCTGAATCAAG
JMFF040L22+ GTCTGAATCAAG
JMFF011F11+ GGGAGCGAGAAAGAATTTGGCCTGTTGTGTCTGAATCAAG
JMFF046I05+ GAGAAAGAATTGGGCCTGTNGTGTCTGAATCAAG
____________________________________________________________
consensus GGGAGCGAGAAAGAATTTGGCCTGTTGTGTCTGAATCAAG
. : . : . : . : . : . :
JMFF019I24+ GATTTTGTCATCTTCCTCTGCTTCATAATCCGCAACTACGTGGTAAGGGAGAAGCCTTTC
JMFF040L22+ GATTTTGTCATCTTCCTCTGCTTCATAATCCGCAACTACGTGGTAAGGGAGAAGCCTTTC
JMFF011F11+ GATTTTGTCATCTTCCTCTGCTTCATAATCCGCAACTACGTGGTAAGGGAGAAGCCTTTC
JMFF046I05+ GATTTNGTCATCTTCCTCTGCTTCATAATCCGCAACTACGTGGTAAGGGAGAAGCCTNTC
____________________________________________________________
consensus GATTTTGTCATCTTCCTCTGCTTCATAATCCGCAACTACGTGGTAAGGGAGAAGCCTTTC
. : . : . : . : . : . :
JMFF019I24+ GCAGGCATCCTCGAGGGAAGAGAAAGGGCGCTTGAAGTCAGGATGGCATACTCGCCAGGC
JMFF040L22+ GCAGGCACCCTCGAGGGAAGAGAAAGGGCGCTTGAAGTCAGGATGGCATACTCGCCAGGC
JMFF011F11+ GCAGGCATCCTCGAGGGAAGAGAAAGGGCGCTTGAAGTCAGGATGGCATACTCGCCAGGC
JMFF046I05+ GCAGGCATCCTCGAGGGAAGAGAAAGGGCGCTTGAAGTCAGGATGGCATACTCGCCAGGC
____________________________________________________________
consensus GCAGGCATCCTCGAGGGAAGAGAAAGGGCGCTTGAAGTCAGGATGGCATACTCGCCAGGC
. : . : . : . : . : . :
JMFF019I24+ GTCCTGGTAAGCCATCTGCAGCTCCGCCGTATTGGAGGCCTGCGCCGGCCGATTGAGCTT
JMFF040L22+ GTCCTGGTAAGCCATCTGCAGCTCCGCCGTATTGGAGGCCTGCGCCGGCCGATTGAGCTT
JMFF011F11+ GTCCTGGTAAGCCATCTGCAGCTCCGCCGTATTGGAGGCCTGCGCCGGCCGATTGAGCTT
JMFF046I05+ GTCCTGGTAAGCCATCTGCAGCTCCGCCGTATTGGAGGCCTGCGCCGGCCGATTGAGCTT
____________________________________________________________
consensus GTCCTGGTAAGCCATCTGCAGCTCCGCCGTATTGGAGGCCTGCGCCGGCCGATTGAGCTT
. : . : . : . : . : . :
JMFF019I24+ CTGCTGCTGCTGCTGCTGCTGCAGCTGTTGCTGTTGCGAAGGGTTCGCATTGGGGGTTTG
JMFF040L22+ CTGCTGCTGCTGCTGCTGCTACAGCTGTTGCTGTTGCGAAGGGTTCGCATTGGGGGTTTG
JMFF011F11+ CTGCTGCTGCTGCTGCTGCTGCAGCTGTTGCTGTTGCGAAGGGTTCGCATTGGGGGTTTG
JMFF046I05+ CTGCTGCTGCTGCTGCTGCTGCAGCTGTTGCTGTTGCGAAGGGTTCGCATTGGGGGTTTG
____________________________________________________________
consensus CTGCTGCTGCTGCTGCTGCTGCAGCTGTTGCTGTTGCGAAGGGTTCGCATTGGGGGTTTG
. : . : . : . : . : . :
JMFF019I24+ CTGAATAGGGATCTGGAGGGCGGGATTAGGGTTAGGGGTTTGCTGATTGGGATTAGGCGT
JMFF040L22+ CTGAATAGGGATCTGGAGGGCGGGATTAGGGTTAGGGGTTTGCTGATTGGGATTAGGCGT
JMFF011F11+ CTGAATAGGGATCTGGAGGGCGGGATTAGGGTTAGGGGTTTGCTGATTGGGATTAGGCGT
JMFF046I05+ CTGAATAGGGATCTGGAGGGCGGGATTAGGGTTAGGGGTTTGCTGATTGGGATTAGGCGT
____________________________________________________________
consensus CTGAATAGGGATCTGGAGGGCGGGATTAGGGTTAGGGGTTTGCTGATTGGGATTAGGCGT
. : . : . : . : . : . :
JMFF019I24+ GGGATTGAGAGATTGGGATTGCTGGCGGTGGAGGAAGGGTTGAGGACGAAGATGAGCGTC
JMFF040L22+ GGGATTGAGAGATTGGGATTGCTGGCGGTGGAGGAAGGGTTGAGGACGAAGATGAGCGTC
JMFF011F11+ GGGATTGAGAGATTGGGATTGCTGGCGGTGGAGGAAGGGTTGAGGACGAAGATGAGCGTC
JMFF046I05+ GGGATTGAGAGATTGGGATTGCTGGCGGTGGAGGAAGGGTTGAGGACGAAGATGAGCGTC
____________________________________________________________
consensus GGGATTGAGAGATTGGGATTGCTGGCGGTGGAGGAAGGGTTGAGGACGAAGATGAGCGTC
. : . : . : . : . : . :
JMFF019I24+ GATGTTGGAAGGGAAACGAGCCATGGCATCTTGCTGTTGCTGCTGCTTCTGGCGTTGGAT
JMFF040L22+ GATGTTGGAAGGGAAACGAGCCATGGCATCTTGCTGTTGCTGCTGCTTCTGGCGTTGGAT
JMFF011F11+ GATGTTGGAAGGGAAACGAGCCATGGCATCTTGCTGTTGCTGCTGCTTCTGGCGTTGGAT
JMFF046I05+ GATGTTGGAAGGGAAACGAGCCATGGCATCTTGCTGTTGCTGCTGCTTCTGGCGTTGGAT
____________________________________________________________
consensus GATGTTGGAAGGGAAACGAGCCATGGCATCTTGCTGTTGCTGCTGCTTCTGGCGTTGGAT
. : . : . : . : . : . :
JMFF019I24+ CTGTTGCAGGAGATGCTGCTGAGCTAACGCCTTCGCCTCCTCCATTTCTGCAATTTCATC
JMFF040L22+ CTGTTGCAGGAGATGCTGCTGAGCTAACGCCTTCGCCTCCTCCATTTCTGCAATTTCATC
JMFF011F11+ CTGTTGCAGGAGATGCTGCTGAGCTAACGCCTTCGCCTCCTCCATTTCTGCAATTTCATC
JMFF046I05+ CTGTTGCAGGAGATGCTGCTGAGCTAACGCCTTCGCCTCCTCCCTTTCTGCAATTTCATC
____________________________________________________________
consensus CTGTTGCAGGAGATGCTGCTGAGCTAACGCCTTCGCCTCCTCCATTTCTGCAATTTCATC
. : . : . : . : . : . :
JMFF019I24+ C
JMFF040L22+ C
JMFF011F11+ C
JMFF046I05+ CAAATTTTAACTTCCAATTTCGCCACATATATATAACCCAACTCTCTGTGTGAACCGGAC
____________________________________________________________
consensus CAAATTTTAACTTCCAATTTCGCCACATATATATAACCCAACTCTCTGTGTGAACCGGAC
. : . : . : . : . : . :
JMFF046I05+ CTCAATCCTCATCGGACATGGGGAGCGAGTGTCTGCTTTTTCCGAAAACAAAAATAACAT
____________________________________________________________
consensus CTCAATCCTCATCGGACATGGGGAGCGAGTGTCTGCTTTTTCCGAAAACAAAAATAACAT