Contig 006083:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011F11Sequence521006083 (4)ref|XP_004235329.1|7e-45PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop727008358 (4)ref|XP_009776009.1|1e-45PREDICTED: bromodomain-containing protein DDB_G0280777 [Nicotiana sylvestris]
JMFF019I24Sequence493006083 (4)ref|XP_004235329.1|4e-39PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop176008358 (4)
JMFF040L22Sequence495006083 (4)ref|XP_004235329.1|5e-38PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop739008358 (4)ref|XP_009776009.1|2e-54PREDICTED: bromodomain-containing protein DDB_G0280777 [Nicotiana sylvestris]
JMFF046I05Sequence634006083 (4)ref|XP_004235329.1|5e-40PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop604008358 (4)ref|XP_004235329.1|5e-26PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Solanum lycop

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF019I24+ GTCTGAATCAAG
JMFF040L22+ GTCTGAATCAAG
JMFF011F11+ GGGAGCGAGAAAGAATTTGGCCTGTTGTGTCTGAATCAAG
JMFF046I05+ GAGAAAGAATTGGGCCTGTNGTGTCTGAATCAAG
                      ____________________________________________________________
consensus GGGAGCGAGAAAGAATTTGGCCTGTTGTGTCTGAATCAAG
 
. : . : . : . : . : . :
JMFF019I24+ GATTTTGTCATCTTCCTCTGCTTCATAATCCGCAACTACGTGGTAAGGGAGAAGCCTTTC
JMFF040L22+ GATTTTGTCATCTTCCTCTGCTTCATAATCCGCAACTACGTGGTAAGGGAGAAGCCTTTC
JMFF011F11+ GATTTTGTCATCTTCCTCTGCTTCATAATCCGCAACTACGTGGTAAGGGAGAAGCCTTTC
JMFF046I05+ GATTTNGTCATCTTCCTCTGCTTCATAATCCGCAACTACGTGGTAAGGGAGAAGCCTNTC
                      ____________________________________________________________
consensus GATTTTGTCATCTTCCTCTGCTTCATAATCCGCAACTACGTGGTAAGGGAGAAGCCTTTC
 
. : . : . : . : . : . :
JMFF019I24+ GCAGGCATCCTCGAGGGAAGAGAAAGGGCGCTTGAAGTCAGGATGGCATACTCGCCAGGC
JMFF040L22+ GCAGGCACCCTCGAGGGAAGAGAAAGGGCGCTTGAAGTCAGGATGGCATACTCGCCAGGC
JMFF011F11+ GCAGGCATCCTCGAGGGAAGAGAAAGGGCGCTTGAAGTCAGGATGGCATACTCGCCAGGC
JMFF046I05+ GCAGGCATCCTCGAGGGAAGAGAAAGGGCGCTTGAAGTCAGGATGGCATACTCGCCAGGC
                      ____________________________________________________________
consensus GCAGGCATCCTCGAGGGAAGAGAAAGGGCGCTTGAAGTCAGGATGGCATACTCGCCAGGC
 
. : . : . : . : . : . :
JMFF019I24+ GTCCTGGTAAGCCATCTGCAGCTCCGCCGTATTGGAGGCCTGCGCCGGCCGATTGAGCTT
JMFF040L22+ GTCCTGGTAAGCCATCTGCAGCTCCGCCGTATTGGAGGCCTGCGCCGGCCGATTGAGCTT
JMFF011F11+ GTCCTGGTAAGCCATCTGCAGCTCCGCCGTATTGGAGGCCTGCGCCGGCCGATTGAGCTT
JMFF046I05+ GTCCTGGTAAGCCATCTGCAGCTCCGCCGTATTGGAGGCCTGCGCCGGCCGATTGAGCTT
                      ____________________________________________________________
consensus GTCCTGGTAAGCCATCTGCAGCTCCGCCGTATTGGAGGCCTGCGCCGGCCGATTGAGCTT
 
. : . : . : . : . : . :
JMFF019I24+ CTGCTGCTGCTGCTGCTGCTGCAGCTGTTGCTGTTGCGAAGGGTTCGCATTGGGGGTTTG
JMFF040L22+ CTGCTGCTGCTGCTGCTGCTACAGCTGTTGCTGTTGCGAAGGGTTCGCATTGGGGGTTTG
JMFF011F11+ CTGCTGCTGCTGCTGCTGCTGCAGCTGTTGCTGTTGCGAAGGGTTCGCATTGGGGGTTTG
JMFF046I05+ CTGCTGCTGCTGCTGCTGCTGCAGCTGTTGCTGTTGCGAAGGGTTCGCATTGGGGGTTTG
                      ____________________________________________________________
consensus CTGCTGCTGCTGCTGCTGCTGCAGCTGTTGCTGTTGCGAAGGGTTCGCATTGGGGGTTTG
 
. : . : . : . : . : . :
JMFF019I24+ CTGAATAGGGATCTGGAGGGCGGGATTAGGGTTAGGGGTTTGCTGATTGGGATTAGGCGT
JMFF040L22+ CTGAATAGGGATCTGGAGGGCGGGATTAGGGTTAGGGGTTTGCTGATTGGGATTAGGCGT
JMFF011F11+ CTGAATAGGGATCTGGAGGGCGGGATTAGGGTTAGGGGTTTGCTGATTGGGATTAGGCGT
JMFF046I05+ CTGAATAGGGATCTGGAGGGCGGGATTAGGGTTAGGGGTTTGCTGATTGGGATTAGGCGT
                      ____________________________________________________________
consensus CTGAATAGGGATCTGGAGGGCGGGATTAGGGTTAGGGGTTTGCTGATTGGGATTAGGCGT
 
. : . : . : . : . : . :
JMFF019I24+ GGGATTGAGAGATTGGGATTGCTGGCGGTGGAGGAAGGGTTGAGGACGAAGATGAGCGTC
JMFF040L22+ GGGATTGAGAGATTGGGATTGCTGGCGGTGGAGGAAGGGTTGAGGACGAAGATGAGCGTC
JMFF011F11+ GGGATTGAGAGATTGGGATTGCTGGCGGTGGAGGAAGGGTTGAGGACGAAGATGAGCGTC
JMFF046I05+ GGGATTGAGAGATTGGGATTGCTGGCGGTGGAGGAAGGGTTGAGGACGAAGATGAGCGTC
                      ____________________________________________________________
consensus GGGATTGAGAGATTGGGATTGCTGGCGGTGGAGGAAGGGTTGAGGACGAAGATGAGCGTC
 
. : . : . : . : . : . :
JMFF019I24+ GATGTTGGAAGGGAAACGAGCCATGGCATCTTGCTGTTGCTGCTGCTTCTGGCGTTGGAT
JMFF040L22+ GATGTTGGAAGGGAAACGAGCCATGGCATCTTGCTGTTGCTGCTGCTTCTGGCGTTGGAT
JMFF011F11+ GATGTTGGAAGGGAAACGAGCCATGGCATCTTGCTGTTGCTGCTGCTTCTGGCGTTGGAT
JMFF046I05+ GATGTTGGAAGGGAAACGAGCCATGGCATCTTGCTGTTGCTGCTGCTTCTGGCGTTGGAT
                      ____________________________________________________________
consensus GATGTTGGAAGGGAAACGAGCCATGGCATCTTGCTGTTGCTGCTGCTTCTGGCGTTGGAT
 
. : . : . : . : . : . :
JMFF019I24+ CTGTTGCAGGAGATGCTGCTGAGCTAACGCCTTCGCCTCCTCCATTTCTGCAATTTCATC
JMFF040L22+ CTGTTGCAGGAGATGCTGCTGAGCTAACGCCTTCGCCTCCTCCATTTCTGCAATTTCATC
JMFF011F11+ CTGTTGCAGGAGATGCTGCTGAGCTAACGCCTTCGCCTCCTCCATTTCTGCAATTTCATC
JMFF046I05+ CTGTTGCAGGAGATGCTGCTGAGCTAACGCCTTCGCCTCCTCCCTTTCTGCAATTTCATC
                      ____________________________________________________________
consensus CTGTTGCAGGAGATGCTGCTGAGCTAACGCCTTCGCCTCCTCCATTTCTGCAATTTCATC
 
. : . : . : . : . : . :
JMFF019I24+ C
JMFF040L22+ C
JMFF011F11+ C
JMFF046I05+ CAAATTTTAACTTCCAATTTCGCCACATATATATAACCCAACTCTCTGTGTGAACCGGAC
                      ____________________________________________________________
consensus CAAATTTTAACTTCCAATTTCGCCACATATATATAACCCAACTCTCTGTGTGAACCGGAC
 
. : . : . : . : . : . :
JMFF046I05+ CTCAATCCTCATCGGACATGGGGAGCGAGTGTCTGCTTTTTCCGAAAACAAAAATAACAT
                      ____________________________________________________________
consensus CTCAATCCTCATCGGACATGGGGAGCGAGTGTCTGCTTTTTCCGAAAACAAAAATAACAT