Contig 006076:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-                                  CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTT
                      ____________________________________________________________
consensus                                     CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-          TTTTTCGGATATAACTATGTTTATTTATTGTCTTACACTGTTTAAATCTGTAGATTCCTA
                      ____________________________________________________________
consensus             TTTTTCGGATATAACTATGTTTATTTATTGTCTTACACTGTTTAAATCTGTAGATTCCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-          CAGCTGAGTGTGAAGATACATACACATACTTTGTATTACATTGAGGTATTGCGAGGAACA
rJMFF027L24-                                                  TTGAGGTATTGCGAGGAACA
                      ____________________________________________________________
consensus             CAGCTGAGTGTGAAGATACATACACATACTTTGTATTACATTGAGGTATTGCGAGGAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-          GAGATGGATAATTGTACAGATCAATCAACAGAGATATACTCGTATAGTTCACCTTCTCCT
rJMFF027L24-          GAGATGGATAATTGTACAGATCAATCAACAGAGATATACTCGTATAGTTCACCTTCTCCT
                      ____________________________________________________________
consensus             GAGATGGATAATTGTACAGATCAATCAACAGAGATATACTCGTATAGTTCACCTTCTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-          CTAGCACAATCTATAATCACCTCCTCAAACAAACTATTGAATGACTATGCATCATTTGCT
rJMFF027L24-          CTAGCACAATCTATAATCACCTCCTCAAACAAACTATTGAATGACTATGCATCATTTGCT
                      ____________________________________________________________
consensus             CTAGCACAATCTATAATCACCTCCTCAAACAAACTATTGAATGACTATGCATCATTTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-          TTCCGTTTAAAAGATTGAGAATGGAGATCCCTGGTAAAGCTTGTAGTTGTGTCCAAGAAG
rJMFF027L24-          TTCCGTTTAAAAGATTGAGAATGGAGATCCCTGGTAAAGCTTGTAGTTGTGTCCAAGAAG
                      ____________________________________________________________
consensus             TTCCGTTTAAAAGATTGAGAATGGAGATCCCTGGTAAAGCTTGTAGTTGTGTCCAAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-          TAGAGAACAAGTGACAGTACACAACAACACACAAACATTGGTATGGGCCCAAAAACCCAA
rJMFF027L24-          TAGAGAACAAGTGACAGTACACAACAACACACAAACATTGGTATGGGCCCAAAAACCCAA
                      ____________________________________________________________
consensus             TAGAGAACAAGTGACAGTACACAACAACACACAAACATTGGTATGGGCCCAAAAACCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-          AGAAAGAGAGGGAATGACAAGTAAAACGCCCGTAGCCCAAGTGACCAAAAGTAGCTCCCT
rJMFF027L24-          AGAAAGAGAGGGAATGACAAGTAAAACGCCCGTAGCCCAAGTGACCAAAAGTAGCTCCCT
                      ____________________________________________________________
consensus             AGAAAGAGAGGGAATGACAAGTAAAACGCCCGTAGCCCAAGTGACCAAAAGTAGCTCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-          CGATTCAAATTTCTCACAACATACTCTATAGAATCTGTACTATCTTTGAATGTGGGCACC
rJMFF027L24-          CGATTCAAATTTCTCACAACATACTCTATAGAATCTGTACTATCTTTGAATGTGGGCACC
JMFF027L24+                                                                    ACC
JMFF045A18+                           CAACATACTCTATAGAATCTGTACTATCTTGNAATGTGGGCACC
                      ____________________________________________________________
consensus             CGATTCAAATTTCTCACAACATACTCTATAGAATCTGTACTATCTTTGAATGTGGGCACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-          GTAGCTAAGAAGCTAACATGGGCATAATACCTAATAGACTGCACATTGCAGAGAANAGCT
rJMFF027L24-          GTAGCTAAGAAGCTAACATGGGCATAATACCTAATAGACTGCACATTGCAGAGAAAAGCT
JMFF027L24+           GTAGCTAAGAAGCTAACATGGGCATAATACCTAATAGACTGCACATTGCAGAGAAAAGCT
JMFF045A18+           GTAGCTAAGAAGCTAACATGGGCATAATACCTAATAGACTGCACATTGCAGAGAAAAGCT
                      ____________________________________________________________
consensus             GTAGCTAAGAAGCTAACATGGGCATAATACCTAATAGACTGCACATTGCAGAGAAAAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-          ACGAGGAAGCATAGCAAGATGGTGAAGAACTTTACAGAAGACAAAATTGCAGTTTTGTTG
rJMFF027L24-          ACGAGGAAGCATAGCAAGATGGTGAAGAACTTTACAGAAGACAAAATTGCAGTTTTGTTG
JMFF027L24+           ACGAGGAAGCATAGCAAGATGGTGAAGAACTTTACAGAAGACAAAATTGCAGTTTTGTTG
JMFF045A18+           ACGAGGAAGCATAGCAAGATGGTGAAGAACTTTACAGAAGACAAAATTGCAGTTTTGTTG
                      ____________________________________________________________
consensus             ACGAGGAAGCATAGCAAGATGGTGAAGAACTTTACAGAAGACAAAATTGCAGTTTTGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF045A18-          CCATAAAGAAGGTT                                              
rJMFF027L24-          CCATAAAGAAGGTTAGATGATGCAGGGTCGGATTTGCCACTCACATATACACTTATTATC
JMFF027L24+           CCATAAAGAAGGTTAGATGATGCAGGGTCGGATTTGCCACTCACATATACACTTATTATC
JMFF045A18+           CCATAAAGAAGGTTAGATGATGCAGGGTCGGATTTGCCACTCACATATACACTTATTATC
                      ____________________________________________________________
consensus             CCATAAAGAAGGTTAGATGATGCAGGGTCGGATTTGCCACTCACATATACACTTATTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF027L24-          GAGCTGAGAGTGATAGCTGTGGTTGCCAAAAGTGTTGAAGCCATTATGTTGTTCCGTATT
JMFF027L24+           GAGCTGAGAGTGATAGCTGTGGTTGCCAAAAGTGTTGAAGCCATTATGTTGTTCCGTATT
JMFF045A18+           GAGCTGAGAGTGATAGCTGTGGTTGCCAAAAGTGTTGAAGCCATTATGTTGTTCCGTATT
                      ____________________________________________________________
consensus             GAGCTGAGAGTGATAGCTGTGGTTGCCAAAAGTGTTGAAGCCATTATGTTGTTCCGTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF027L24-          GTTTGAACAGTTAAAACACCGTTCTTAATTGGATCGGACATCATGGAGTGGACCCAGCTA
JMFF027L24+           GTTTGAACAGTTAAAACACCGTTCTTAATTGGATCGGACATCATGGAGTGGACCCAGCTA
JMFF045A18+           GTTTGAACAGTTAAAACACCGTTCTTAATTGGATCGGACATCATGGAGTGGACCCAGCTA
                      ____________________________________________________________
consensus             GTTTGAACAGTTAAAACACCGTTCTTAATTGGATCGGACATCATGGAGTGGACCCAGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF027L24-          TGGCGAGACTCGGCATTGATACCGATCAC                               
JMFF027L24+           TGGCGAGACTCGGCATTGATACCGATCACAGTTCTGGTGGGGTTCCGGACAATGGTGAAG
JMFF045A18+           TGGCGAGACTCGGCATTGATACCGATCACAGTTCTGGTGGGGTTCCGGACAATGGTGAAG
                      ____________________________________________________________
consensus             TGGCGAGACTCGGCATTGATACCGATCACAGTTCTGGTGGGGTTCCGGACAATGGTGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027L24+           AGAAGCCAGGCATGGTACGACACCATAATTGCGATGCCCGCAGGCACCAG-AACGTAGTC
JMFF045A18+           AGAAGCCAGGCATGGTACGACACCATAATTGCGATGCCCGCAGGCACCAGAAACGTAGTC
                      ____________________________________________________________
consensus             AGAAGCCAGGCATGGTACGACACCATAATTGCGATGCCCGCAGGCACCAGAAACGTAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027L24+           CAGCTGCTCTTCTTTGAAACCCATCTTCCCTTTCTCTCTCTCAATCTCTCTCTCCCAAAT
JMFF045A18+           CAGCTGCTCTTCTTTGAAACCCATCTTCCCTTTCTCTCTCTCAATCTCTCTCTCCCAAAT
                      ____________________________________________________________
consensus             CAGCTGCTCTTCTTTGAAACCCATCTTCCCTTTCTCTCTCTCAATCTCTCTCTCCCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027L24+           CAAGAATTCAACAGCAC                                           
JMFF045A18+           CAAGAATTCAACAGCACAGCACTACAGCAGTACAGTGGCGATCAGAATTCACAAAGGGGA
                      ____________________________________________________________
consensus             CAAGAATTCAACAGCACAGCACTACAGCAGTACAGTGGCGATCAGAATTCACAAAGGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045A18+           AAGGGCACATCAACCCGCAAAAGTAAAGTGTGAGCATCGTCCAACTGTCCAACCATGACC
                      ____________________________________________________________
consensus             AAGGGCACATCAACCCGCAAAAGTAAAGTGTGAGCATCGTCCAACTGTCCAACCATGACC