Contig 006072:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011B23Sequence399006072 (3)ref|XP_006361724.1|6e-59PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Solanum tube714006172 (4)gb|AAO25536.1|3e-68cellulose synthase [Populus tremuloides]
JMFF037H11Sequence587006072 (3)emb|CBI21020.3|5e-99unnamed protein product [Vitis vinifera]630006172 (4)ref|XP_002515536.1|4e-64Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus commu
JMFF044H15Sequence647006072 (3)emb|CBI21020.3|3e-107unnamed protein product [Vitis vinifera]628006172 (4)gb|AAO25536.1|1e-50cellulose synthase [Populus tremuloides]

Alignment

This contig is upended


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JMFF037H11+                     CTTTCCCTTCCGAGTATCTGTTGGTTATTTGAGTCATACTTTTCTCCTGT
JMFF044H15+                                                            TTTTCTCCTGT
                      ____________________________________________________________
consensus                       CTTTCCCTTCCGAGTATCTGTTGGTTATTTGAGTCATACTTTTCTCCTGT
 
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JMFF037H11+           TTAAGTTTCCAACCTTCTACTCTCTCTTTCCAGTCAACACTACCAAGCCCGTAAGAATTC
JMFF044H15+           NTAAGTTTCCAACCTTCTACTCTCTCTTTCCAGTCAACACTACCAAGCCCGTAAGAATTC
                      ____________________________________________________________
consensus             TTAAGTTTCCAACCTTCTACTCTCTCTTTCCAGTCAACACTACCAAGCCCGTAAGAATTC
 
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JMFF037H11+           AAGTCCTTTGAAGGGTCCACAATTCTCACAGGAACTGGTTGCCTCGGGTCAAGGTATGGT
JMFF044H15+           AAGTCCTTTGAAGGGTCCACAATTCTCACAGGAACTGGTTGCCTCGGGTCAAGGTATGGT
                      ____________________________________________________________
consensus             AAGTCCTTTGAAGGGTCCACAATTCTCACAGGAACTGGTTGCCTCGGGTCAAGGTATGGT
 
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JMFF037H11+           AGGGAGTGGCCATGCTTGTCTCCGGGGCCCAGAGGTCCTGACATACTTCTTATAGATTGA
JMFF011B23+                                      CCCAGAGGTCCTGACATACTTCTTATAGATTGA
JMFF044H15+           AGGGAGTGGCCATGCTTGTCTCCGGGGCCCAGAGGTCCTGACATACTTCTTATAGATTGA
                      ____________________________________________________________
consensus             AGGGAGTGGCCATGCTTGTCTCCGGGGCCCAGAGGTCCTGACATACTTCTTATAGATTGA
 
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JMFF037H11+           GTATCTGGTGTTGCACTTAGAGGGATTTCACCAGAGATTGGCTGCCCATTTGTCAGAAGA
JMFF011B23+           GTATCTGGTGTTGCACTTAGAGGGATTTCNCCAGAGATTGGCTGCCCATTNGTCAGAAGA
JMFF044H15+           GTATCTGGTGTTGCACTTAGAGGGATTTCACCAGAGATTGGCTGCCCATTTGTCAGAAGA
                      ____________________________________________________________
consensus             GTATCTGGTGTTGCACTTAGAGGGATTTCACCAGAGATTGGCTGCCCATTTGTCAGAAGA
 
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JMFF037H11+           GGAATTGGTTGGTGAGATTCATGTCTAGAGGACGAAGAGAGATCAACATCTTCTCCCTGC
JMFF011B23+           GGAATTGGTTGGTGAGATTCATGTCTAGAGGACGAAGAGAGATCAACATCTTCTCCCTGC
JMFF044H15+           GGAATTGGTTGGTGAGATTCATGTCTAGAGGACGAAGAGAGATCAACATCTTCTCCCTGC
                      ____________________________________________________________
consensus             GGAATTGGTTGGTGAGATTCATGTCTAGAGGACGAAGAGAGATCAACATCTTCTCCCTGC
 
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JMFF037H11+           CACTTCCGTCTAGCCTTGACATTTCCTTCGCCATAATTGAACTCATTGACAAGGTCGTCA
JMFF011B23+           CACTTCCGTCTAGCCTTGACATTTCCTTCGCCATAATTGAACTCATTGACAAGGTCGTCA
JMFF044H15+           CACTTCCGTCTAGCCTTGACATTTCCTTCGCCATAATTGAACTCATTGACAAGGTCGTCA
                      ____________________________________________________________
consensus             CACTTCCGTCTAGCCTTGACATTTCCTTCGCCATAATTGAACTCATTGACAAGGTCGTCA
 
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JMFF037H11+           ACATCCTCCTCCTCATCATCACCGTCAACTCGTGGGCTCCCTTTAAGCCTCTTGTATCGG
JMFF011B23+           ACATCCTCCTCCTCATCATCACCGTCAACTCGTGGGCTCCCTTTAAGCCTCTTGTATCGG
JMFF044H15+           ACATCCTCCTCCTCATCATCACCGTCAACTCGTGGGCTCCCTTTAAGCCTCTTGTATCGG
                      ____________________________________________________________
consensus             ACATCCTCCTCCTCATCATCACCGTCAACTCGTGGGCTCCCTTTAAGCCTCTTGTATCGG
 
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JMFF037H11+           GTCTTGCACTGGGGGCATGCTTGGTTCCCATCTTTGCGTTCATACTCATAACAAGTCCGA
JMFF011B23+           GTCTTGCACTGGGGGCATGCTTGGTTCCCATCTTTGCGTTCATACTCATAACAAGTCCGA
JMFF044H15+           GTCTTGCACTGGGGGCATGCTTGGTTCCCATCTTTGCGTTCATACTCATAACAAGTCCGA
                      ____________________________________________________________
consensus             GTCTTGCACTGGGGGCATGCTTGGTTCCCATCTTTGCGTTCATACTCATAACAAGTCCGA
 
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JMFF037H11+           CAAACAGGAAAGGCACACTCATTACAAGCAACAAATATATCACCATTAGCAGTCACC   
JMFF011B23+           CAAACAGGAAAGGCACACTCATTACAAGCAACAAATATATCACCATTAGCAGTCACC   
JMFF044H15+           CAAACAGGAAAGGCACACTCATTACAAGCAACAAATATATCACCATTAGCAGTCACCCGG
                      ____________________________________________________________
consensus             CAAACAGGAAAGGCACACTCATTACAAGCAACAAATATATCACCATTAGCAGTCACCCGG