Contig 006068:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005I05Sequence523006068 (6)ref|XP_009758320.1|7e-67PREDICTED: translocon-associated protein subunit alpha-like [Nicotiana sylvestr650006068 (6)ref|XP_006367333.1|2e-60PREDICTED: translocon-associated protein subunit alpha-like [Solanum tuberosum]
JMFF028F05Sequence576006068 (6)ref|XP_009758320.1|2e-63PREDICTED: translocon-associated protein subunit alpha-like [Nicotiana sylvestr709006068 (6)ref|XP_006367333.1|2e-85PREDICTED: translocon-associated protein subunit alpha-like [Solanum tuberosum]
JMFF043O01Sequence623006068 (6)ref|XP_009758320.1|3e-86PREDICTED: translocon-associated protein subunit alpha-like [Nicotiana sylvestr610006068 (6)ref|XP_006367333.1|9e-46PREDICTED: translocon-associated protein subunit alpha-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF043O01-                                                            ATATAATAAA
                      ____________________________________________________________
consensus                                                               ATATAATAAA
 
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rJMFF043O01-          ATTATATAGGATATGAAGAAAAGAGACGGAAGTGTCGCCGACGCCAACCAACAACCATTC
rJMFF005I05-                        GAAGAAAAGAGACGGAAGTGTCGCCGACGCCAACCAACAACCATTC
                      ____________________________________________________________
consensus             ATTATATAGGATATGAAGAAAAGAGACGGAAGTGTCGCCGACGCCAACCAACAACCATTC
 
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rJMFF043O01-          AAGGAAACGAGGAATAAGCAACTAATAAACAGGAATAGTGTGATATGAAAGTGTCTTTAA
rJMFF005I05-          AAGGAAACGAGGAATAAGCAACTAATAAACAGGAATAGTGTGATATGAAAGTGTCTTTAA
                      ____________________________________________________________
consensus             AAGGAAACGAGGAATAAGCAACTAATAAACAGGAATAGTGTGATATGAAAGTGTCTTTAA
 
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rJMFF043O01-          CAAAAGTGTTTCCTGTCTATCTCAGCTTCAGACCAACCAAAAAATGGGTAAGGTGGTTTC
rJMFF005I05-          CAAAAGTGTTTCCTGTCTATCTCAGCTTCAGACCAACCAAAAAATGGGTAAGGTGGTTTC
                      ____________________________________________________________
consensus             CAAAAGTGTTTCCTGTCTATCTCAGCTTCAGACCAACCAAAAAATGGGTAAGGTGGTTTC
 
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rJMFF043O01-          TTAGTAGCGCTACAACAGCGGTGGAGGATGTTAACTACCTCAATATCGAGAACTATGAAG
rJMFF005I05-          TTAGTAGCGCTACAACAGCGGTGGAGGATGTTAACTACCTCAATATCGAGAACTATGAAG
                      ____________________________________________________________
consensus             TTAGTAGCGCTACAACAGCGGTGGAGGATGTTAACTACCTCAATATCGAGAACTATGAAG
 
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rJMFF043O01-          CTTTGCCTCAAACGACTTATGCTCGTTACAAGCTAACTCAAACATTTCTCCTTTACTTCT
rJMFF005I05-          CTTTGCCTCAAACGACTTATGCTCGTTACAAGCTAACTCAAACATTTCTCCTTTACTTCT
rJMFF028F05-                                                             TTTACTTCT
                      ____________________________________________________________
consensus             CTTTGCCTCAAACGACTTATGCTCGTTACAAGCTAACTCAAACATTTCTCCTTTACTTCT
 
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rJMFF043O01-          TCTTTGATTTGGACTGAGACTGGGCATATGCAGTTCCCTCCAGCCATTCATCCATCGAGG
rJMFF005I05-          TCTTTGATTTGGACTGAGACTGGGCATATGCAGTTCCCTCCAGCCATTCATCCATCGAGG
rJMFF028F05-          TCTTTGATTTGGACTGAGACTGGGCATATGCAGTTCCCTCCAGCCATTCATCCATCGAGG
                      ____________________________________________________________
consensus             TCTTTGATTTGGACTGAGACTGGGCATATGCAGTTCCCTCCAGCCATTCATCCATCGAGG
 
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rJMFF043O01-          CATCTGTTGTTCCAGTTCCAACTTCAACCTTTGCCTTCGGAGCCCTCTTGGTTTTCTTTG
rJMFF005I05-          CATCTGTTGTTCCAGTTCCAACTTCAACCTTTGCCTTCGGAGCCCTCTTGGTTTTCTTTG
rJMFF028F05-          CATCTGTTGTTCCAGTTCCAACTTCAACCTTTGCCTTCGGAGCCCTCTTGGTTTTCTTTG
                      ____________________________________________________________
consensus             CATCTGTTGTTCCAGTTCCAACTTCAACCTTTGCCTTCGGAGCCCTCTTGGTTTTCTTTG
 
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rJMFF043O01-          ACAAATTTTGAATTCGATCACGGATCCAGAACCCAAGAAGGGCAACAATGGCAACTCCNA
rJMFF005I05-          ACAAATTTTGAATTCGATCACGGATCCAGAACCCAAGAAGGGCAACAATGGCAACTCCAA
rJMFF028F05-          ACAAATTTTGAATTCGATCACGGATCCAGAACCCAAGAAGGGCAACAATGGCAACTCCAA
                      ____________________________________________________________
consensus             ACAAATTTTGAATTCGATCACGGATCCAGAACCCAAGAAGGGCAACAATGGCAACTCCAA
 
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rJMFF043O01-          GACAAAACAAGAAAACAGACTCAACACTGAANAGGCCTCCAGGCTCAGTGACTTCAATAG
rJMFF005I05-          GACAAAACAAGAAAACAGACTCAACACTGAAAAGGCCTCCAGGCTCAGTGACTTCAATAG
rJMFF028F05-          GACAAAACAAGAAAACAGACTCAACACTGAAAAGGCCTCCAGGCTCAGTGACTTCAATAG
JMFF028F05+                                                    GGCTCAGTGACTTCAATAG
JMFF043O01+                                                TCCAGGCTCAGTGACTTCAATAG
                      ____________________________________________________________
consensus             GACAAAACAAGAAAACAGACTCAACACTGAAAAGGCCTCCAGGCTCAGTGACTTCAATAG
 
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rJMFF043O01-          TGCTATTGTAGAATGTGTTTTGATAAGGTTGTCGGTCTATTTCATAAATAATGCTTCCAA
rJMFF005I05-          TGCTATTGTAGAATGTGTTTTGATAAGGTTGTCGGTCTATTTCATAAATAATGCTTCCAA
rJMFF028F05-          TGCTATTGTAGAATGTGTTTTGATAAGGTTGTCGGTCTATTTCATAAATAATGCTTCCAA
JMFF028F05+           TGCTATTGTAGAATGTGTTTTGATAAGGTTGTCGGTCTATTTCATAAATAATGCTTCCAA
JMFF043O01+           TGCTATTGTAGAATGTGTTNTGATAAGGTNGTCGGTCTATNTCATAAATAATGCTTCCAA
                      ____________________________________________________________
consensus             TGCTATTGTAGAATGTGTTTTGATAAGGTTGTCGGTCTATTTCATAAATAATGCTTCCAA
 
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rJMFF005I05-          CAAGATCAAATGTTCCAGGCTGCAAGAATTTGCTCACACCAAATATATATGGAAGTGTTG
rJMFF028F05-          CAAGATCAAATGTTCCAGGCTGCAAGAATTTGCTCACACCAAATATATATGGAAGTGTTG
JMFF028F05+           CAAGATCAAATGTTCCAGGCTGCAAGAATTTGCTCACACCAAATATATATGGAAGTGTTG
JMFF005I05+                           AGGCTGCAAGAATTTGCTCACACCAAATATATATGGAAGTGTTG
JMFF043O01+           CAAGATCAAATGTTCCAGGCTGCAAGAATTTGCTCACACCAAATATATATGGAAGTGTTG
                      ____________________________________________________________
consensus             CAAGATCAAATGTTCCAGGCTGCAAGAATTTGCTCACACCAAATATATATGGAAGTGTTG
 
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rJMFF005I05-          CTTG                                                        
rJMFF028F05-          CTTGGGCAGAAGGAGGAACTGTTGCGTTGCTAAACCCCTGAGTAGTGAGATTTTGAACTA
JMFF028F05+           CTTGGGCAGAAGGAGGAACTGTTGCGTTGCTAAACCCCTGAGTAGTGAGATTTTGAACTA
JMFF005I05+           CTTGGGCAGAAGGAGGAACTGTTGCGTTGCTAAACCCCTGAGTAGTGAGATTTTGAACTA
JMFF043O01+           CTTGGGCAGAAGGAGGAACTGTTGCGTTGCTAAACCCCTGAGTAGTGAGATTTTGAACTA
                      ____________________________________________________________
consensus             CTTGGGCAGAAGGAGGAACTGTTGCGTTGCTAAACCCCTGAGTAGTGAGATTTTGAACTA
 
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rJMFF028F05-          AATAGCGATGATCATAAGGAAGATGAAGAGTGGCCCGGATTGCTAAGACATTCACTCTTG
JMFF028F05+           AATAGCGATGATCATAAGGAAGATGAAGAGTGGCCCGGATTGCTAAGACATTCACTCTTG
JMFF005I05+           AATAGCGATGATCATAAGGAAGATGAAGAGTGGCCCGGATTGCTAAGACATTCACTCTTG
JMFF043O01+           AATAGCGATGATCATAAGGAAGATGAAGAGTGGCCCGGATTGCTAAGACATTCACTCTTG
                      ____________________________________________________________
consensus             AATAGCGATGATCATAAGGAAGATGAAGAGTGGCCCGGATTGCTAAGACATTCACTCTTG
 
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rJMFF028F05-          ATTCC                                                       
JMFF028F05+           ATT--CCATCATTTTTCATTCCAACTAAAAGTTCGCTCTGCTCCCCAGCTGTAACAAACT
JMFF005I05+           ATTCCCCATCATTTTTCATTCCAACTAAAAGTTCGCTCTGCTCCCCAGCTGTAACAAACT
JMFF043O01+           ATTCCCCATCATTTTTCATTCCAACTAAAAGTTCGCTCTGCTCCCCAGCTGTAACAAACT
                      ____________________________________________________________
consensus             ATTCCCCATCATTTTTCATTCCAACTAAAAGTTCGCTCTGCTCCCCAGCTGTAACAAACT
 
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JMFF028F05+           TAGAAGGGTTTTTGGGGAAAACACAAACTGTATCAACTCCAGGAGCTGGACTTAAACTTT
JMFF005I05+           TAGAAGGGTTTTTGGGGAAAACACAAACTGTATCAACTCCAGGAGCTGGACTTAAACTTT
JMFF043O01+           TAGAAGGGTTTTTGGGGAAAACACAAACTGTATCAACTCCAGGAGCTGGACTTAAACTTT
                      ____________________________________________________________
consensus             TAGAAGGGTTTTTGGGGAAAACACAAACTGTATCAACTCCAGGAGCTGGACTTAAACTTT
 
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JMFF028F05+           CATCGCCAAAGTCTTGAACATCCTCACCAACTATTCCAAGATCTCCTACTTCCTCAGTAC
JMFF005I05+           CATCGCCAAAGTCTTGAACATCCTCACCAACTATTCCAAGATCTCCTACTTCCTCAGTAC
JMFF043O01+           CATCGCCAAAGTCTTGAACATCCTCACCAACTATTCCAAGATCTCCTACTTCCTCAGTAC
                      ____________________________________________________________
consensus             CATCGCCAAAGTCTTGAACATCCTCACCAACTATTCCAAGATCTCCTACTTCCTCAGTAC
 
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JMFF028F05+           CATCAACTACTTCAGCTTCAGCTTCAGCTTCTGATTCACATTTAGTAACTTGTAAAGATG
JMFF005I05+           CATCAACTACTTCAGCTTCAGCTTCAGCTTCTGATTCACATTTAGTAACTTGTAAAGATG
JMFF043O01+           CATCAACTACTTCAGCTTCAGCTTCAGCTTCTGATTCACATTTAGTAACTTGTAAAGATG
                      ____________________________________________________________
consensus             CATCAACTACTTCAGCTTCAGCTTCAGCTTCTGATTCACATTTAGTAACTTGTAAAGATG
 
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JMFF028F05+           AGGCGGAGAAGAGAATGAGAGCGAAAATGAAGAAAACCCTAATCGTCATTGCCGAGGTAG
JMFF005I05+           AGGCGGAGAAGAGAATGAGAGCGAAAATGAAGAAAACCCTAATCGTCATTGCCGAGGTAG
JMFF043O01+           AGGCGGAGAAGAGAATGAGAGCGAAAATGAAGAAAACCCTAATCGTCATTGCCGAGGTAG
                      ____________________________________________________________
consensus             AGGCGGAGAAGAGAATGAGAGCGAAAATGAAGAAAACCCTAATCGTCATTGCCGAGGTAG
 
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JMFF028F05+           GAAGTATGCAGAGGCACAC                                         
JMFF005I05+           GAAGTATGCAGAGGCACACAGTCGCGAGCGATGAGGTTCGTGAGATGGAAAGAAAAGGC 
JMFF043O01+           GAAGTATGCAGAGGCACACAGTCGCGAGCGATGAGGTTCGTGAGATGGAAAGAAAAGGCC
                      ____________________________________________________________
consensus             GAAGTATGCAGAGGCACACAGTCGCGAGCGATGAGGTTCGTGAGATGGAAAGAAAAGGCC