Contig 006065:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043I09Sequence644006065 (3)ref|XP_010269543.1|2e-57PREDICTED: leucine-rich repeat extensin-like protein 5 [Nelumbo nucifera]483002659 (3)ref|XP_009774156.1|2e-31PREDICTED: putative mediator of RNA polymerase II transcription subunit 8 [Nico
JMFF047A11Sequence164006065 (3)357002659 (3)emb|CDP00673.1|1e-20unnamed protein product [Coffea canephora]
JMFN012E05Sequence642006065 (3)gb|KDP35020.1|1e-66hypothetical protein JCGZ_09308 [Jatropha curcas]

Alignment

This contig is upended


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JMFN012E05+                                  GCTCCATTAAGCGCGTTGAGAAACCAGTCCTCGGACT
                      ____________________________________________________________
consensus                                    GCTCCATTAAGCGCGTTGAGAAACCAGTCCTCGGACT
 
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JMFN012E05+           TGGTTGAGCTCTCGAGAAGCGACCCGATTGACGACATCGTGTCGGACTTTGAAGGAAAGA
JMFF043I09+                           AAGCGACCCGATTGACGACATCGTGTCGGACTTGNAAGGAAAGA
                      ____________________________________________________________
consensus             TGGTTGAGCTCTCGAGAAGCGACCCGATTGACGACATCGTGTCGGACTTTGAAGGAAAGA
 
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JMFN012E05+           GGAATAATCGGAGCCGAGATGTCTTCGTACCGTTTGAATTAGAGTTGATGCGGTCGTACT
JMFF043I09+           GGAATAATCGGAGCCGAGATGTCTTCGTACCGTTTGAATTAGAGTTGATGCGGTCGTACT
                      ____________________________________________________________
consensus             GGAATAATCGGAGCCGAGATGTCTTCGTACCGTTTGAATTAGAGTTGATGCGGTCGTACT
 
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JMFN012E05+           CATCGATCATGTTCTCCAGGTCTTCATCCGTGGTGACGGAGATTAAGGAGTCGAGGTCCT
JMFF043I09+           CATCGATCATGTTCTCCAGGTCTTCATCCGTGGTGACGGAGATTAAGGAGTCGAGGTCCT
                      ____________________________________________________________
consensus             CATCGATCATGTTCTCCAGGTCTTCATCCGTGGTGACGGAGATTAAGGAGTCGAGGTCCT
 
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JMFN012E05+           CGTTGGGGAGCTGGTACTTGAGCGAGAAGGAGCGGCCATTCAGGAGCGTTTTGGAGAGGC
JMFF043I09+           CGTTGGGGAGCTGGTACTTGAGCGAGAAGGAGCGGCCATTCAGGAGCGTTTTGGAGAGGC
                      ____________________________________________________________
consensus             CGTTGGGGAGCTGGTACTTGAGCGAGAAGGAGCGGCCATTCAGGAGCGTTTTGGAGAGGC
 
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JMFN012E05+           GGAGGGAGAGGTCGGAGAGCGATGAGTGCCGATCGGTGACGATGATTCGCGTGTCGCCGC
JMFF043I09+           GGAGGGAGAGGTCGGAGAGCGATGAGTGCCGATCGGTGACGATGATTCGCGTGTCGCCGC
                      ____________________________________________________________
consensus             GGAGGGAGAGGTCGGAGAGCGATGAGTGCCGATCGGTGACGATGATTCGCGTGTCGCCGC
 
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JMFN012E05+           CGACGTAGCAGAGCGACTTATCGTGCGGGCGGGGAACGATGTGGCCGCCGTAGCTGCACA
JMFF043I09+           CGACGTAGCAGAGCGACTTATCGTGCGGGCGGGGAACGATGTGGCCGCCGTAGCTGCACA
                      ____________________________________________________________
consensus             CGACGTAGCAGAGCGACTTATCGTGCGGGCGGGGAACGATGTGGCCGCCGTAGCTGCACA
 
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JMFF047A11+                                                                     GT
JMFN012E05+           TCAGCCGCAGCTTTCCGCCGCCTGGAGCTGCGGCGGCGTACGGAGGAGGCTCATCCCAGT
JMFF043I09+           TCAGCCGCAGCTTTCCGCCGCCTGGAGCTGCGGCGGCGTACGGAGGAGGCTCATCCCAGT
                      ____________________________________________________________
consensus             TCAGCCGCAGCTTTCCGCCGCCTGGAGCTGCGGCGGCGTACGGAGGAGGCTCATCCCAGT
 
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JMFF047A11+           CAGTGTTGCGTGACCGCGGCGAGGAGTCAATCGAGTCAGCGTAGTTGACATGCGTCGTTG
JMFN012E05+           CAGTGTTGCGTGACCGCGGCGAGGAGTCAATCGAGTCAGCGTAGTTGACATGCGTTGGTG
JMFF043I09+           CAGTGTTGCGTGACCGCGGCGAGGAGTCAATCGAGTCAGCGTAGTTGACATGCGTTGGTG
                      ____________________________________________________________
consensus             CAGTGTTGCGTGACCGCGGCGAGGAGTCAATCGAGTCAGCGTAGTTGACATGCGTTGGTG
 
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JMFF047A11+           GCGCCCNNNNNNTNTNCGNCTGTTGTTGCCCCACCGCCGCGACCGCCGCCGCGGCGGATG
JMFN012E05+           GCGGCGGCGGAATCTGCGGCTGTTGTTGCCCCACCGCCGCGACCGCCGCCGCGGCGGATG
JMFF043I09+           GCGGCGGCGGAATCTGCGGCTGTTGTTGCCCCACCGCCGCGACCGCCGCCGCGGCGGATG
                      ____________________________________________________________
consensus             GCGGCGGCGGAATCTGCGGCTGTTGTTGCCCCACCGCCGCGACCGCCGCCGCGGCGGATG
 
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JMFF047A11+           AATTAGGTCCGCTTGAGAGAGGCGGAGTATCCATAGACGGCC                  
JMFN012E05+           AATTAGGTCCGCTTGAGAGAGGCGGAGTATCCATAGACGGCCGCAGAGGATTTGGGCGAA
JMFF043I09+           AATTAGGTCCGCTTGAGAGAGGCGGAGTATCCATAGACGGCCGCAGAGGATTTGGGCGAA
                      ____________________________________________________________
consensus             AATTAGGTCCGCTTGAGAGAGGCGGAGTATCCATAGACGGCCGCAGAGGATTTGGGCGAA
 
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JMFN012E05+           ATTTG                                                       
JMFF043I09+           ATTTGTTAAAAGGGGGGTAAGAGGTTTCGCCAGGCAGGATTTCTCATGTACTCGATAATC
                      ____________________________________________________________
consensus             ATTTGTTAAAAGGGGGGTAAGAGGTTTCGCCAGGCAGGATTTCTCATGTACTCGATAATC