Contig 006062:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037H09Sequence568006062 (5)ref|XP_009783268.1|9e-61PREDICTED: proteasome subunit beta type-6-like [Nicotiana sylvestris]
JMFF042N19Sequence639006062 (5)ref|XP_010048490.1|4e-111PREDICTED: proteasome subunit beta type-6 [Eucalyptus grandis] gb|KCW80737.1| hy
JMSF049O24Sequence699006062 (5)ref|XP_010048490.1|9e-129PREDICTED: proteasome subunit beta type-6 [Eucalyptus grandis] gb|KCW80737.1| hy680006062 (5)emb|CDP12496.1|1e-96unnamed protein product [Coffea canephora]
JMSF052P11Sequence647006062 (5)ref|XP_010048490.1|2e-116PREDICTED: proteasome subunit beta type-6 [Eucalyptus grandis] gb|KCW80737.1| hy

Alignment

This contig is upended


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rJMSF049O24-                                    ATTTTTCCATTCCCATGGTCTTAACAAAACTAGT
                      ____________________________________________________________
consensus                                       ATTTTTCCATTCCCATGGTCTTAACAAAACTAGT
 
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rJMSF049O24-          AATAGCAGACTAAATAAGCCTTTTTAATATGCTTCCAACCAAACATAACAAGGGCGTTTT
                      ____________________________________________________________
consensus             AATAGCAGACTAAATAAGCCTTTTTAATATGCTTCCAACCAAACATAACAAGGGCGTTTT
 
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rJMSF049O24-          AAATAAGCCTTAACTTAATAGTTCTTATAAAAGGAAAAAGAGTTTTTTGAAGAAGTTTCT
                      ____________________________________________________________
consensus             AAATAAGCCTTAACTTAATAGTTCTTATAAAAGGAAAAAGAGTTTTTTGAAGAAGTTTCT
 
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rJMSF049O24-          CTTGGGCCAAACAAGTGCTAGAACCAATGCTCCTTTCTCAAATCTCAACTGACCATCGGC
                      ____________________________________________________________
consensus             CTTGGGCCAAACAAGTGCTAGAACCAATGCTCCTTTCTCAAATCTCAACTGACCATCGGC
 
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rJMSF049O24-          TCGGGACTGCTGGTTTGCAAAATGTCCAGAAGTGAATTGTGTGCCTCCATCTCGTCGTGC
                      ____________________________________________________________
consensus             TCGGGACTGCTGGTTTGCAAAATGTCCAGAAGTGAATTGTGTGCCTCCATCTCGTCGTGC
 
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rJMSF049O24-          CATATTGGAAGGGTGTCGCCTGGGTAAAATTTCCTAGTTACCCCTTCCGAGTTAATAGTA
JMSF049O24+                                                     CCTTCCGAGTTAATAGTA
                      ____________________________________________________________
consensus             CATATTGGAAGGGTGTCGCCTGGGTAAAATTTCCTAGTTACCCCTTCCGAGTTAATAGTA
 
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rJMSF049O24-          ACAGTCCGAACTACGCCACCACTGGCACCATCCCGCGCAATGGCAAGAGACACTGCCTTG
JMSF052P11+                      TACGCCACCACTGGCACCATCCCGCGCAATGGCAAGAGACACTGCCTTG
JMSF049O24+           ACAGTCCGAATTACGCCACCACTGGCACCATCCCGCGCAATGGCAAGAGACACTGCCTTG
JMFF042N19+                                CTGGCACCATCCCGCGCAATGGCAAGAGACACTGCCTTG
                      ____________________________________________________________
consensus             ACAGTCCGAATTACGCCACCACTGGCACCATCCCGCGCAATGGCAAGAGACACTGCCTTG
 
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rJMSF049O24-          ACCACAAATTTCTCAGCTTCTTCTTGGGTCATTCCTTCCTTCCATGCTTGGTCAAAGAAA
JMSF052P11+           ACCACAAATTTCTCAGCTTCTTCTTGGGTCATTCCTTCCTTCCATGCTTGGTCAAAGAAA
JMSF049O24+           ACCACAAATTTCTCAGCTTCTTCTTGGGTCATTCCTTCCTTCCATGCTTGGTCAAAGAAA
JMFF042N19+           ACCACAAATTTCTCAGCTTCTTCTGGGTCNATTCCTTCCTTCCATGCTTGGTCAAAGAAA
                      ____________________________________________________________
consensus             ACCACAAATTTCTCAGCTTCTTCTTGGGTCATTCCTTCCTTCCATGCTTGGTCAAAGAAA
 
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rJMSF049O24-          CCATATAAATAAGAAGATCCTGATCCTCCAATAGCAAAAGGCTGCTCCAATATTGTGCCT
JMSF052P11+           CCATATAAATAAGAAGATCCTGATCCTCCAATAGCAAAAGGCTGCTCCAATATTGTGCCT
JMSF049O24+           CCATATAAATAAGAAGATCCTGATCCTCCAATAGCAAAAGGCTGCTCCAATATTGTGCCT
JMFF042N19+           CCATATAAATAAGAAGATCCTGATCCTCCAATAGCAAAAGGCTGCTCCAATATTGTGCCT
                      ____________________________________________________________
consensus             CCATATAAATAAGAAGATCCTGATCCTCCAATAGCAAAAGGCTGCTCCAATATTGTGCCT
 
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rJMSF049O24-          CCAAGGGGTACCCCATATATTTTACCTCCTTCATGTTTGTCCCAGCCACCAACAATAAGC
JMSF052P11+           CCAAGGGGTACCCCATATATTTTACCTCCTTCATGTTTGTCCCAGCCACCAACAATAAGC
JMSF049O24+           CCAAGGGGTACCCCATATATTTTACCTCCTTCATGTTTGTCCCAGCCACCAACAATAAGC
JMFF042N19+           CCAAGGGGTACCCCATATATTTTACCTCCTTCATGTTTGTCCCAGCCACCAACAATAAGC
                      ____________________________________________________________
consensus             CCAAGGGGTACCCCATATATTTTACCTCCTTCATGTTTGTCCCAGCCACCAACAATAAGC
 
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rJMSF049O24-          CCAGTTTGAAGCATATTCTTGTTATTGTAGGCTAATAATCTGACAAGGTTTGCTGCAACC
JMSF052P11+           CCAGTTTGAAGCATATTCTTGTTATTGTAGGCTAATAATCTGACAAGGTTTGCTGCAACC
JMSF049O24+           CCAGTTTGAAGCATATTCTTGTTATTGTAGGCTAATAATCTGACAAGGTTTGCTGCAACC
JMFF037H09+                            CTTGTTATTGTAGGCTAATAATCTGACAAGGTTTGCTGCAACC
JMFF042N19+           CCAGTTTGAAGCATATTCTTGTTATTGTAGGCTAATAATCTGACAAGGTTTGCTGCAACC
                      ____________________________________________________________
consensus             CCAGTTTGAAGCATATTCTTGTTATTGTAGGCTAATAATCTGACAAGGTTTGCTGCAACC
 
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rJMSF049O24-          TTAACAGTTGTTGGCTGCCCAAGCTGTATCGTGTGTTGGTGTAGAA              
JMSF052P11+           TTAACAGTTGTTGGCTGCCCAAGCTGTATCGTGTGTTGGTGTAGAAAATAGCGAACATAG
JMSF049O24+           TTAACAGTTGTTGGCTGCCCAAGCTGTATCGTGTGTTGGTGTAGAAAATAGCGAACATAG
JMFF037H09+           TTAACAGTTGTTGGCTGCCCAAGCTGTATCGTGTGTTGGTGTAGAAAATAGCGAACATAG
JMFF042N19+           TTAACAGTTGTTGGCTGCCCAAGCTGTATCGTGTGTTGGTGTAGAAAATAGCGAACATAG
                      ____________________________________________________________
consensus             TTAACAGTTGTTGGCTGCCCAAGCTGTATCGTGTGTTGGTGTAGAAAATAGCGAACATAG
 
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JMSF052P11+           TCTGAAACAATTTGCGAATCTGCTGCCGAACCCGAACGACACACGTAGACATTATCAGTG
JMSF049O24+           TCTGAAACAATTTGCGAATCTGCTGCCGAACCCGAACGACACACGTAGACATTATCAGTG
JMFF037H09+           TCTGAAACAATTTGCGAATCTGCTGCCGAACCCGAACGACACACGTAGACATTATCAGTG
JMFF042N19+           TCTGAAACAATTTGCGAATCTGCTGCCGAACCCGAACGACACACGTAGACATTATCAGTG
                      ____________________________________________________________
consensus             TCTGAAACAATTTGCGAATCTGCTGCCGAACCCGAACGACACACGTAGACATTATCAGTG
 
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JMSF052P11+           AGCTTAGTGATCTTATCTGAGGCCCTATTAGCCACATACATTCCTGTACTGGTTCGAGAA
JMSF049O24+           AGCTTAGTGATCTTATCTGAGGCCCTATTAGCCACATACATTCCTGTACTGGTTCGAGAA
JMFF037H09+           AGCTTAGTGATCTTATCTGAGGCCCTATTAGCCACATACATTCCTGTACTGGTTCGAGAA
JMFF042N19+           AGCTTAGTGATCTTATCTGAGGCCCTATTAGCCACATACATTCCTGTACTGGTTCGAGAA
                      ____________________________________________________________
consensus             AGCTTAGTGATCTTATCTGAGGCCCTATTAGCCACATACATTCCTGTACTGGTTCGAGAA
 
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JMSF052P11+           TCGGCGCCGAGAACGACGCCGCCGTTGTAAGTGACGCCGATGATGGTGGTCCCCATCGAG
JMSF049O24+           TCGGCGCCGAGAACGACGCCGCCGTTGTAAGTGACGCCGATGATGGTGGTCCCCATCGAG
JMFF037H09+           TCGGCGCCGAGAACGACGCCGCCGTTGTAAGTGACGCCGATGATGGTGGTCCCCATCGAG
JMFF042N19+           TCGGCGCCGAGAACGACGCCGCCGTTGTAAGTGACGCCGATGATGGTGGTCCCCATCGAG
                      ____________________________________________________________
consensus             TCGGCGCCGAGAACGACGCCGCCGTTGTAAGTGACGCCGATGATGGTGGTCCCCATCGAG
 
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JMSF052P11+           TGAGGTGAATCCAAATCGTTGAGCAAATTCGCGTCCATTTTTAAGGTTTAGGTTAACTTC
JMSF049O24+           TGAGGTGAATCCAAATCGTTGAGCAAATTCGCGTCCATTTTTAAGGTTTAGGTTAACTTC
JMFF037H09+           TGAGGTGAATCCAAATCGTTGAGCAAATTCGCGTCCATTTTTAAGGTTTAGGTTAACTTC
JMFF042N19+           TGAGGTGAATCCAAATCGTTGAGCAAATTCGCGTCCATTTTTAAGGTTTAGGTTAACTTC
                      ____________________________________________________________
consensus             TGAGGTGAATCCAAATCGTTGAGCAAATTCGCGTCCATTTTTAAGGTTTAGGTTAACTTC
 
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JMSF052P11+           GCAGATGAAAATAAGAGAGGATTGATCGAACTTACAATTGGATGTTAGTTAAAAAC    
JMSF049O24+           GCAGATGAAAATAAGAGAGGATTGATCGAACTTACAATTGGATGTTAGTTAAAAAC    
JMFF037H09+           GCAGATGAAAATAAGAGAGGATTGATCGAACTTACAATTGGATGTTAGTTAAAAAC    
JMFF042N19+           GCAGATGAAAATAAGAGAGGATTGATCGAACTTACAATTGGATGTTAGTTAAAAACCCGG
                      ____________________________________________________________
consensus             GCAGATGAAAATAAGAGAGGATTGATCGAACTTACAATTGGATGTTAGTTAAAAACCCGG