Contig 006060:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042M03Sequence660006060 (2)ref|XP_006338902.1|7e-94PREDICTED: coatomer subunit delta-like isoform X1 [Solanum tuberosum] ref|XP_006328024399
JMSF024O07Sequence656006060 (2)ref|XP_006338902.1|1e-106PREDICTED: coatomer subunit delta-like isoform X1 [Solanum tuberosum] ref|XP_006744005682 (3)ref|XP_006349321.1|2e-108PREDICTED: coatomer subunit delta-like isoform X1 [Solanum tuberosum] ref|XP_006

Alignment

This contig is upended


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JMSF024O07+                        TTTTGTCAATCTCACTAGCTTTGCGCTTCATGACATCCTTAGTCTCA
                      ____________________________________________________________
consensus                          TTTTGTCAATCTCACTAGCTTTGCGCTTCATGACATCCTTAGTCTCA
 
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JMSF024O07+           TTAATCTTGCTCTGCAAGACCAATTTGTGCAGCTTCTCTTCATGACTCTCCATTTCACAG
JMFF042M03+           TTAATCTTGCTCTGCAAGACCAATTTGTGCAGCTTCTCTTCATGACTCTCCATTTCACAG
                      ____________________________________________________________
consensus             TTAATCTTGCTCTGCAAGACCAATTTGTGCAGCTTCTCTTCATGACTCTCCATTTCACAG
 
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JMSF024O07+           TACTGCTTGACTTGTACAACATTAATATTCTCCTTATGGCCCAGAGATATGACTTCATCA
JMFF042M03+           TACTGCTTGACTTGTACAACATTAATATTCTCCTTATGGCCCAGAGATATGACTTCATCA
                      ____________________________________________________________
consensus             TACTGCTTGACTTGTACAACATTAATATTCTCCTTATGGCCCAGAGATATGACTTCATCA
 
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JMSF024O07+           AATGCAAAAAGGAGCTCAAAAGCTGTTTTGCAAATGCCCTCCTCATCTAGGGAATAAGAA
JMFF042M03+           AATGCAAAAAGGAGCTCAAAAGCTGTTTTGCAAATGCCCTCCTCATCTAGGGAATAAGAA
                      ____________________________________________________________
consensus             AATGCAAAAAGGAGCTCAAAAGCTGTTTTGCAAATGCCCTCCTCATCTAGGGAATAAGAA
 
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JMSF024O07+           TATTCAGGGACAACTTTAGACAGCAGCCTCAGTGTCTCTAGATCTTCAAGAATGTTGCTC
JMFF042M03+           TATTCAGGGACAACTTTAGACAGCAGCCTCAGTGTCTCTAGATCTTCAAGAATGTTGCTC
                      ____________________________________________________________
consensus             TATTCAGGGACAACTTTAGACAGCAGCCTCAGTGTCTCTAGATCTTCAAGAATGTTGCTC
 
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JMSF024O07+           TGTTTATTGGTCACTAGGAGCAAATACAGAGACTCTATTGGGTGATACACATATCGGACA
JMFF042M03+           TGTTTATTGGTCACTAGGAGCAAATACAGAGACTCTATTGGGTGATACACATATCGGACA
                      ____________________________________________________________
consensus             TGTTTATTGGTCACTAGGAGCAAATACAGAGACTCTATTGGGTGATACACATATCGGACA
 
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JMSF024O07+           TTTTCAGTCTCAACATATGTGTGTTGTTTCCCTATTCCAACCAATTTGGGAAAAGCTGCA
JMFF042M03+           TTTTCAGTCTCAACATATGTGTGTTGTTTCCCTATTCCAACCAATTTGGGAAAAGCTGCA
                      ____________________________________________________________
consensus             TTTTCAGTCTCAACATATGTGTGTTGTTTCCCTATTCCAACCAATTTGGGAAAAGCTGCA
 
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JMSF024O07+           AGATACCCCTCAATTCTTATTCGAGACATATCCACAAATTGCCTCGAAACAAGTGCTTTC
JMFF042M03+           AGATACCCCTCAATTCTTATTCGAGACATATCCACAAATTGCCTCGAAACAAGTGCTTTC
                      ____________________________________________________________
consensus             AGATACCCCTCAATTCTTATTCGAGACATATCCACAAATTGCCTCGAAACAAGTGCTTTC
 
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JMSF024O07+           CCAGATTTAGTTATAATGGAAGCAGCCAAAACAACCATCTTGA                 
JMFF042M03+           CCAGATTTAGTTATAATGGAAGCAGCCAAAACAACCATCTTGATACTTAAAACGGCACGA
                      ____________________________________________________________
consensus             CCAGATTTAGTTATAATGGAAGCAGCCAAAACAACCATCTTGATACTTAAAACGGCACGA
 
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JMFF042M03+           TCGCTTTGCAAAATCGGATATCCGGCAGGCCTGAATGAGCAGCTGACGGCGGTGATCAGA
                      ____________________________________________________________
consensus             TCGCTTTGCAAAATCGGATATCCGGCAGGCCTGAATGAGCAGCTGACGGCGGTGATCAGA
 
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JMFF042M03+           GAGAAGCTACAATCGGATCAGTTGATTCAGTTCGCAGTATTGGCGCGGTGCCGGTGGAAA
                      ____________________________________________________________
consensus             GAGAAGCTACAATCGGATCAGTTGATTCAGTTCGCAGTATTGGCGCGGTGCCGGTGGAAA
 
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JMFF042M03+           TGAGCGCTGGCTGAAGCTCTGTAAAGCCATTTTATTTAGAACTTGAAGACTAAGAAAGAG
                      ____________________________________________________________
consensus             TGAGCGCTGGCTGAAGCTCTGTAAAGCCATTTTATTTAGAACTTGAAGACTAAGAAAGAG