Contig 006056:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041F06Sequence658006056 (6)ref|XP_009798419.1|6e-35PREDICTED: HMG-Y-related protein A-like [Nicotiana sylvestris]609006056 (6)ref|XP_006364633.1|1e-19PREDICTED: HMG-Y-related protein A-like [Solanum tuberosum]
JMFF041I05Sequence652006056 (6)ref|XP_009798419.1|2e-35PREDICTED: HMG-Y-related protein A-like [Nicotiana sylvestris]558006056 (6)ref|XP_009798419.1|9e-12PREDICTED: HMG-Y-related protein A-like [Nicotiana sylvestris]
JMFF048O10Sequence399006056 (6)emb|CDP01624.1|8e-32unnamed protein product [Coffea canephora]320006056 (6)

Alignment

This contig is upended


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rJMFF048O10-                                                ACCCTGGAGAGATTTTTTTTTT
                      ____________________________________________________________
consensus                                                   ACCCTGGAGAGATTTTTTTTTT
 
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rJMFF048O10-          TTTTACAGTGAATCTGGGAACAAGTAGGCATTAAATTAAACAAGTGACATGCACCCCAAT
rJMFF041I05-                         GGGAACAAGTAGGCATTAAATTAAACAAGTGACATGCACCCCAAT
rJMFF041F06-              ACAGTGAATCTGGGAACAAGTAGGCATTAAATTAAACAAGTGACATGCACCCCAAT
                      ____________________________________________________________
consensus             TTTTACAGTGAATCTGGGAACAAGTAGGCATTAAATTAAACAAGTGACATGCACCCCAAT
 
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rJMFF048O10-          CCAGATGCAAAGACATAACTAATCACACAAACAACAATAAAGAAACAAACAAGTCACCCC
rJMFF041I05-          CCAGATGCAAAGACATAACTAATCACACAAACAACAATAAAGAAACAAACAAGTCACCCC
rJMFF041F06-          CCAGATGCAAAGACATAACTAATCACACAAACAACAATAAAGAAACAAACAAGTCACCCC
                      ____________________________________________________________
consensus             CCAGATGCAAAGACATAACTAATCACACAAACAACAATAAAGAAACAAACAAGTCACCCC
 
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rJMFF048O10-          CCAAGAAAATCACCCTTCCTAGTACTACAACTACTGACATGACACAACATAGTCACCACC
rJMFF041I05-          CCAAGAAAATCACCCTTCCTAGTACTACAACTACTGACATGACACAACATAGTCACCACC
rJMFF041F06-          CCAAGAAAATCACCCTTCCTAGTACTACAACTACTGACATGACACAACATAGTCACCACC
JMFF041F06+                          TTCCTAGTACTACAACTACTGACATGACACAACATAGTCACCACC
                      ____________________________________________________________
consensus             CCAAGAAAATCACCCTTCCTAGTACTACAACTACTGACATGACACAACATAGTCACCACC
 
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rJMFF048O10-          CATCACCCATCATCATCATCAAGAAATCATCAATGTACCCTAGCTCCGATCCCTTCTGCT
rJMFF041I05-          CATCACCCATCATCATCATCAAGAAATCATCAATGTACCCTAGCTCCGATCCCTTCTGCT
rJMFF041F06-          CATCACCCATCATCATCATCAAGAAATCATCAATGTACCCTAGCTCCGATCCCTTCTGCT
JMFF041F06+           CATCACCCATCATCATCATCAAGAAATCATCAATGTACCCTAGCTCCGATCCCTTCTGCT
JMFF041I05+                   ATCATCATCATCAAGAAATCATCAATGTACCCTAGCTCCGATCCCTTCTGCT
                      ____________________________________________________________
consensus             CATCACCCATCATCATCATCAAGAAATCATCAATGTACCCTAGCTCCGATCCCTTCTGCT
 
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rJMFF048O10-          AATCTGCTCCATTCTGTGCACCCTGCGCCTTCACCTTCCTCGGCCGGCCACGTGGCCG  
rJMFF041I05-          AATCTGCTCCATTCTGTGCACCCTGCGCCTTCACCTTCCTCGGCCGGCCACGTGGCCGCC
rJMFF041F06-          AATCTGCTCCATTCTGTGCACCCTGCGCCTTCACCTTCCTCGGCCGGCCACGTGGCCGCC
JMFF041F06+           AATCTGCTCCATTCTGTGCACCCTGCGCCTTCACCTTCCTCGGCCGGCCACGTGGCCGCC
JMFF041I05+           AATCTGCTCCATTCTGTGCACCCTGCGCCTTCACCTTCCTCGGCCGGCCACGTGGCCGCC
                      ____________________________________________________________
consensus             AATCTGCTCCATTCTGTGCACCCTGCGCCTTCACCTTCCTCGGCCGGCCACGTGGCCGCC
 
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rJMFF041I05-          CGGTCTTGGACGGCGAGGGAGCCGCCGCCGTCGTCTTCGCCTTCTTGGGAGTGGGTGGCG
rJMFF041F06-          CGGTCTTGGACGGCGAGGGAGCCGCCGCCGTCGTCTTCGCCTTCTTGGGAGTGGGTGGCG
JMFF041F06+           CGGTCTTGGACGGCGAGGGAGCCGCCGCCGTCGTCTTCGCCTTCTTGGGAGTGGGTGGCG
JMFF041I05+           CGGTCTTGGACGGCGAGGGAGCCGCCGCCGTCGTCTTCGCCTTCTTGGGAGTGGGTGGCG
                      ____________________________________________________________
consensus             CGGTCTTGGACGGCGAGGGAGCCGCCGCCGTCGTCTTCGCCTTCTTGGGAGTGGGTGGCG
 
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rJMFF041I05-          CATTGGGGTCCTTTCTTGGACGGCCACGAGGCCTGGGAGGAGCATAAATTGTCCCCGGAG
rJMFF041F06-          CATTGGGGTCCTTTCTTGGACGGCCACGAGGCCTGGGAGGAGCATAAATTGTCCCCGGAG
JMFF041F06+           CATTGGGGTCCTTTCTTGGACGGCCACGAGGCCTGGGAGGAGCATAAATTGTCCCCGGAG
JMFF048O10+                                         GCCTGGGAGGAGCATAAATTGTCCCCGGAG
JMFF041I05+           CATTGGGGTCCTTTCTTGGACGGCCACGAGGCCTGGGAGGAGCATAAATTGTCCCCGGAG
                      ____________________________________________________________
consensus             CATTGGGGTCCTTTCTTGGACGGCCACGAGGCCTGGGAGGAGCATAAATTGTCCCCGGAG
 
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rJMFF041I05-          CCACCGGGGCTTTGGGCTTCGGCGGCCTGCCACGGCCGCGCTTCGGCGGCGCGTCCGGGC
rJMFF041F06-          CCACCGGGGCTTTGGGCTTCGGCGGCCTGCCACGGCCGCGCTTCGGCGGCGCGTCCGGGC
JMFF041F06+           CCACCGGGGCTTTGGGCTTCGGCGGCCTGCCACGGCCGCGCTTCGGCGGCGCGTCCGGGC
JMFF048O10+           CCACCGGGGCTTTGGGCTTCGGCGGCCTGCCACGGCCGCGCTTCGGCGGCGCGTCCGGGC
JMFF041I05+           CCACCGGGGCTTTGGGCTTCGGCGGCCTGCCACGGCCGCGCTTCGGCGGCGCGTCCGGGC
                      ____________________________________________________________
consensus             CCACCGGGGCTTTGGGCTTCGGCGGCCTGCCACGGCCGCGCTTCGGCGGCGCGTCCGGGC
 
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rJMFF041I05-          CAGGCTTGAGGTAATTGTTCTTCAAGAAAATGAGATCTCCTCTCTGCTTCATTCTTTCCA
rJMFF041F06-          CAGGCTTGAGGTAATTGTTCTTCAAGAAAATGAGATCTCCTCTCTGCTTCATTCTTTCCA
JMFF041F06+           CAGGCTTGAGGTAATTGTTCTTCAAGAAAATGAGATCTCCTCTCTGCTTCATTCTTTCCA
JMFF048O10+           CAGGCTTGAGGTAATTGTTCTTCAAGAAAATGAGATCTCCTCTCTGCTTCATTCTTTCCA
JMFF041I05+           CAGGCTTGAGGTAATTGTTCTTCAAGAAAATGAGATCTCCTCTCTGCTTCATTCTTTCCA
                      ____________________________________________________________
consensus             CAGGCTTGAGGTAATTGTTCTTCAAGAAAATGAGATCTCCTCTCTGCTTCATTCTTTCCA
 
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rJMFF041I05-          GGTGGAAAGTCAGCAGCTTTGTGTGCGCATCCG                           
rJMFF041F06-          GGTGGAAAGTCAGCAGCTTTGTGTGCGCATCCGACAAGCTCCCATACTTGGATTCAATGT
JMFF041F06+           GGTGGAAAGTCAGCAGCTTTGTGTGCGCATCCGACAAGCTCCCATACTTGGATTCAATGT
JMFF048O10+           GGTGGAAAGTCAGCAGCTTTGTGTGCGCATCCGACAAGCTCCCATACTTGGATTCAATGT
JMFF041I05+           GGTGGAAAGTCAGCAGCTTTGTGTGCGCATCCGACAAGCTCCCATACTTGGATTCAATGT
                      ____________________________________________________________
consensus             GGTGGAAAGTCAGCAGCTTTGTGTGCGCATCCGACAAGCTCCCATACTTGGATTCAATGT
 
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rJMFF041F06-          ACTTGGAAATCGC                                               
JMFF041F06+           ACTTGGAAATCGCAGACTTGTTTGCTCCTTCCTTCTGCTTCAACGCATCTATCGCTTCAA
JMFF048O10+           ACTTGGAAATCGCAGACTTGTTTGCTCCTTCCTTCTGCTTCAACGCATCTATCGCTTCAA
JMFF041I05+           ACTTGGAAATCGCAGACTTGTTTGCTCCTTCCTTCTGCTTCAACGCATCTATCGCTTCAA
                      ____________________________________________________________
consensus             ACTTGGAAATCGCAGACTTGTTTGCTCCTTCCTTCTGCTTCAACGCATCTATCGCTTCAA
 
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JMFF041F06+           GGATCATCTCGGGGTATTCAGGGAGTGATGGAGGCCTGTTGACCCGTTCAGTCGCCATTG
JMFF048O10+           GGATCATCTCGGGGTATTCAGGGAGTGATGGAGGCCTGTTGACCCGTTCAGTCGCCATTG
JMFF041I05+           GGATCATCTCGGGGTATTCAGGGAGTGATGGAGGCCTGTTGACCCGTTCAGTCGCCATTG
                      ____________________________________________________________
consensus             GGATCATCTCGGGGTATTCAGGGAGTGATGGAGGCCTGTTGACCCGTTCAGTCGCCATTG
 
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JMFF041F06+           GAAGTTCTTGGCAGGGAAAGGAAGAGAGAGAGTGTGTGTGTTTGTGTTTTGTGGAGTCC 
JMFF048O10+           GAAGTTCTTGGCAGGGAAAGGAAGAGAGAGAGTGTGTGTGTTTGTGTTTTGCGGAGTCC 
JMFF041I05+           GAAGTTCTTGGCAGGGAAAGGAAGAGAGAGAGTGTGTGTGTTTGTGTTTTGTGGAGTCCC
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consensus             GAAGTTCTTGGCAGGGAAAGGAAGAGAGAGAGTGTGTGTGTTTGTGTTTTGTGGAGTCCC
 
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JMFF041I05+           CACAAAGCGAGCAAGCGTCAGCTTCAAGAGCACAGTAGTAATGTGTCAAGAAACCAGAAA
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consensus             CACAAAGCGAGCAAGCGTCAGCTTCAAGAGCACAGTAGTAATGTGTCAAGAAACCAGAAA