| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040I06 | Sequence | 588 | 006053 (4) | gb|AIA22326.1| | 4e-11 | chloroplast omega-6 fatty acid desaturase [Nicotiana tabacum] | 655 | 015961 | gb|AGG38094.1| | 6e-79 | omega-6 fatty acid desaturase 6 [Musa AB Group] |
| JMSF009G24 | Sequence | 248 | 006053 (4) | 751 | 008507 (2) | ref|XP_004242585.1| | 8e-135 | PREDICTED: omega-6 fatty acid desaturase, chloroplastic [Solanum lycopersicum] | |||
| JMSF019P07 | Sequence | 490 | 006053 (4) | ref|XP_009801093.1| | 5e-30 | PREDICTED: omega-6 fatty acid desaturase, chloroplastic isoform X2 [Nicotiana s | 738 | 008507 (2) | ref|XP_004242585.1| | 2e-131 | PREDICTED: omega-6 fatty acid desaturase, chloroplastic [Solanum lycopersicum] |
| JMSF022I20 | Sequence | 719 | 006053 (4) | ref|XP_009801093.1| | 2e-78 | PREDICTED: omega-6 fatty acid desaturase, chloroplastic isoform X2 [Nicotiana s | |||||
This contig is upended
. : . : . : . : . : . :
JMSF022I20+ GTTCATAGGGTAAATCAGCGGCAACATAGCTAGAGTACCAACAA
____________________________________________________________
consensus GTTCATAGGGTAAATCAGCGGCAACATAGCTAGAGTACCAACAA
. : . : . : . : . : . :
JMSF022I20+ TATCCTCGACCAATTTGNTTTTCGAAAATGATTNGTGTGCACAGTCATGTCCTATTACAA
____________________________________________________________
consensus TATCCTCGACCAATTTGNTTTTCGAAAATGATTNGTGTGCACAGTCATGTCCTATTACAA
. : . : . : . : . : . :
JMSF022I20+ AGAATCCTGTTATTGCAGTTCCCGTCCATGCCCAAGCTAATGGAAGTAGATACCACGGGG
____________________________________________________________
consensus AGAATCCTGTTATTGCAGTTCCCGTCCATGCCCAAGCTAATGGAAGTAGATACCACGGGG
. : . : . : . : . : . :
JMSF022I20+ CTTTGGCAATCATGTAAAGTCCCAAAGAATATGAAGTTACTGATATCAAAACTGTCTTCC
____________________________________________________________
consensus CTTTGGCAATCATGTAAAGTCCCAAAGAATATGAAGTTACTGATATCAAAACTGTCTTCC
. : . : . : . : . : . :
JMSF019P07+ TTTAAAATTATCAATCTCAAACACCTTTTTTGGGAGTGTGTCTATAATATCTTTTA
JMSF022I20+ ATGCTTTAAAATTATCAATCTCAAACACCTTTTTTGGGAGTGTGTCTATAATATCTTTTA
____________________________________________________________
consensus ATGCTTTAAAATTATCAATCTCAAACACCTTTTTTGGGAGTGTGTCTATAATATCTTTTA
. : . : . : . : . : . :
JMSF019P07+ ACGTAACATTATCCGGTAGGGGTTCTCCAATTTGCCTAAAACCATATCTTTCACATAATA
JMSF022I20+ ACGTAACATTATCCGGTAGGGGTTCTCCAATTTGCCTAAAACCATATCTTTCACATAATA
JMFF040I06+ CCGGTAGGGGTTCTCCAATTTGCCTAAAACCATATCTTTCACATAATA
____________________________________________________________
consensus ACGTAACATTATCCGGTAGGGGTTCTCCAATTTGCCTAAAACCATATCTTTCACATAATA
. : . : . : . : . : . :
JMSF019P07+ CTTTCCTATCCTCGGCACTTTCTGCAGGAGAGGGGGCAACCGGAACTGCCACAGCTCGTA
JMSF022I20+ CTTTCCTATCCTCGGCACTTTCTGCAGGAGAGGGGGCAACCGGAACTGCCACAGCTCGTA
JMFF040I06+ CTTTCCTATCCTCGGCACTTTCTGCAGGAGAGGGGGCAACCGGAACTGCCACAGCTCGTA
____________________________________________________________
consensus CTTTCCTATCCTCGGCACTTTCTGCAGGAGAGGGGGCAACCGGAACTGCCACAGCTCGTA
. : . : . : . : . : . :
JMSF019P07+ TAACATTTGTTTTTCTGAAGGAAATTGAACATCTACTCCGTTTGGTTCTTATCTTATGTA
JMSF022I20+ TAACATTTGTTTTTCTGAAGGAAATTGAACATCTACTCCGTTTGGTTCTTATCTTATGTA
JMFF040I06+ TAACATTTGTTTTTCTGAAGGAAATTGAACATCTACTCCGTTTGGTTCTTATCTTATGTA
____________________________________________________________
consensus TAACATTTGTTTTTCTGAAGGAAATTGAACATCTACTCCGTTTGGTTCTTATCTTATGTA
. : . : . : . : . : . :
JMSF019P07+ ATCCTTCTGAAGTAATACCTGGGAAGCTAAGCTGTGCAATTTTATTGCCCAGAATCGGCC
JMSF022I20+ ATCCTTCTGAAGTAATACCTGGGAAGCTAAGCTGTGCAATTTTATTGCCCAGAATCGGCC
JMFF040I06+ ATCCTTCTGAAGTAATACCTGGGAAGCTAAGCTGTGCAATTTTATTGCCCAGAATCGGCC
____________________________________________________________
consensus ATCCTTCTGAAGTAATACCTGGGAAGCTAAGCTGTGCAATTTTATTGCCCAGAATCGGCC
. : . : . : . : . : . :
JMSF019P07+ TCTTCGAAGGGGTC
JMSF022I20+ TCTTCGAAGGGGTC
JMFF040I06+ TCTTCGAAGGGGTCTGAAAAACACTCAAAATAAAAATGTAATTTACGCACAATTACAAAA
____________________________________________________________
consensus TCTTCGAAGGGGTCTGAAAAACACTCAAAATAAAAATGTAATTTACGCACAATTACAAAA
. : . : . : . : . : . :
JMSF009G24+ CAAGATTAGAAAG
JMFF040I06+ CGACATTGGAGATTAAACAAAGGGGGAGAAGGAATAGGAACCCCCACCAAGATTAGAAAG
____________________________________________________________
consensus CGACATTGGAGATTAAACAAAGGGGGAGAAGGAATAGGAACCCCCACCAAGATTAGAAAG
. : . : . : . : . : . :
JMSF009G24+ CTGGAATCTGCAACACTGCAAGCCATAGGAGATTTGGGTCAAGAATCTGCCCTTTGAAGC
JMFF040I06+ CTGGAATCTGCAACACTGCAAGCCATAGGAGATTTGGGTCAAGAATCTGCCCTTTGAAGC
____________________________________________________________
consensus CTGGAATCTGCAACACTGCAAGCCATAGGAGATTTGGGTCAAGAATCTGCCCTTTGAAGC
. : . : . : . : . : . :
JMSF009G24+ TACGGCGTTATTTCAATTACCCTTTAGGCTTTAGCTTCTTCTTAAGCTGGCGGGTAGTAC
JMFF040I06+ TACGGCGTTATTTCAATTACCCTTTAGGCTTTAGCTTCTTCTTAAGCTGGCGGGTAGTAC
____________________________________________________________
consensus TACGGCGTTATTTCAATTACCCTTTAGGCTTTAGCTTCTTCTTAAGCTGGCGGGTAGTAC
. : . : . : . : . : . :
JMSF009G24+ GTGAAGAAGATCATAGTAAAAGGTAAAGCCCTGAAAGCAGTTT
JMFF040I06+ GTGAAGAAGATCATAGTAAAAGGTAAAGCCCTGAAAGCAGTTTTCGCAGAGTTTGTGGAG
____________________________________________________________
consensus GTGAAGAAGATCATAGTAAAAGGTAAAGCCCTGAAAGCAGTTTTCGCAGAGTTTGTGGAG
. : . : . : . : . : . :
JMFF040I06+ TTGGGAGGCTTTGTTATAAGAGGGTGGAATTGGAGTGGCCCCAAAGAAGGATAGAATACT
____________________________________________________________
consensus TTGGGAGGCTTTGTTATAAGAGGGTGGAATTGGAGTGGCCCCAAAGAAGGATAGAATACT