Contig 006053:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040I06Sequence588006053 (4)gb|AIA22326.1|4e-11chloroplast omega-6 fatty acid desaturase [Nicotiana tabacum]655015961gb|AGG38094.1|6e-79omega-6 fatty acid desaturase 6 [Musa AB Group]
JMSF009G24Sequence248006053 (4)751008507 (2)ref|XP_004242585.1|8e-135PREDICTED: omega-6 fatty acid desaturase, chloroplastic [Solanum lycopersicum]
JMSF019P07Sequence490006053 (4)ref|XP_009801093.1|5e-30PREDICTED: omega-6 fatty acid desaturase, chloroplastic isoform X2 [Nicotiana s738008507 (2)ref|XP_004242585.1|2e-131PREDICTED: omega-6 fatty acid desaturase, chloroplastic [Solanum lycopersicum]
JMSF022I20Sequence719006053 (4)ref|XP_009801093.1|2e-78PREDICTED: omega-6 fatty acid desaturase, chloroplastic isoform X2 [Nicotiana s

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF022I20+ GTTCATAGGGTAAATCAGCGGCAACATAGCTAGAGTACCAACAA
                      ____________________________________________________________
consensus GTTCATAGGGTAAATCAGCGGCAACATAGCTAGAGTACCAACAA
 
. : . : . : . : . : . :
JMSF022I20+ TATCCTCGACCAATTTGNTTTTCGAAAATGATTNGTGTGCACAGTCATGTCCTATTACAA
                      ____________________________________________________________
consensus TATCCTCGACCAATTTGNTTTTCGAAAATGATTNGTGTGCACAGTCATGTCCTATTACAA
 
. : . : . : . : . : . :
JMSF022I20+ AGAATCCTGTTATTGCAGTTCCCGTCCATGCCCAAGCTAATGGAAGTAGATACCACGGGG
                      ____________________________________________________________
consensus AGAATCCTGTTATTGCAGTTCCCGTCCATGCCCAAGCTAATGGAAGTAGATACCACGGGG
 
. : . : . : . : . : . :
JMSF022I20+ CTTTGGCAATCATGTAAAGTCCCAAAGAATATGAAGTTACTGATATCAAAACTGTCTTCC
                      ____________________________________________________________
consensus CTTTGGCAATCATGTAAAGTCCCAAAGAATATGAAGTTACTGATATCAAAACTGTCTTCC
 
. : . : . : . : . : . :
JMSF019P07+ TTTAAAATTATCAATCTCAAACACCTTTTTTGGGAGTGTGTCTATAATATCTTTTA
JMSF022I20+ ATGCTTTAAAATTATCAATCTCAAACACCTTTTTTGGGAGTGTGTCTATAATATCTTTTA
                      ____________________________________________________________
consensus ATGCTTTAAAATTATCAATCTCAAACACCTTTTTTGGGAGTGTGTCTATAATATCTTTTA
 
. : . : . : . : . : . :
JMSF019P07+ ACGTAACATTATCCGGTAGGGGTTCTCCAATTTGCCTAAAACCATATCTTTCACATAATA
JMSF022I20+ ACGTAACATTATCCGGTAGGGGTTCTCCAATTTGCCTAAAACCATATCTTTCACATAATA
JMFF040I06+ CCGGTAGGGGTTCTCCAATTTGCCTAAAACCATATCTTTCACATAATA
                      ____________________________________________________________
consensus ACGTAACATTATCCGGTAGGGGTTCTCCAATTTGCCTAAAACCATATCTTTCACATAATA
 
. : . : . : . : . : . :
JMSF019P07+ CTTTCCTATCCTCGGCACTTTCTGCAGGAGAGGGGGCAACCGGAACTGCCACAGCTCGTA
JMSF022I20+ CTTTCCTATCCTCGGCACTTTCTGCAGGAGAGGGGGCAACCGGAACTGCCACAGCTCGTA
JMFF040I06+ CTTTCCTATCCTCGGCACTTTCTGCAGGAGAGGGGGCAACCGGAACTGCCACAGCTCGTA
                      ____________________________________________________________
consensus CTTTCCTATCCTCGGCACTTTCTGCAGGAGAGGGGGCAACCGGAACTGCCACAGCTCGTA
 
. : . : . : . : . : . :
JMSF019P07+ TAACATTTGTTTTTCTGAAGGAAATTGAACATCTACTCCGTTTGGTTCTTATCTTATGTA
JMSF022I20+ TAACATTTGTTTTTCTGAAGGAAATTGAACATCTACTCCGTTTGGTTCTTATCTTATGTA
JMFF040I06+ TAACATTTGTTTTTCTGAAGGAAATTGAACATCTACTCCGTTTGGTTCTTATCTTATGTA
                      ____________________________________________________________
consensus TAACATTTGTTTTTCTGAAGGAAATTGAACATCTACTCCGTTTGGTTCTTATCTTATGTA
 
. : . : . : . : . : . :
JMSF019P07+ ATCCTTCTGAAGTAATACCTGGGAAGCTAAGCTGTGCAATTTTATTGCCCAGAATCGGCC
JMSF022I20+ ATCCTTCTGAAGTAATACCTGGGAAGCTAAGCTGTGCAATTTTATTGCCCAGAATCGGCC
JMFF040I06+ ATCCTTCTGAAGTAATACCTGGGAAGCTAAGCTGTGCAATTTTATTGCCCAGAATCGGCC
                      ____________________________________________________________
consensus ATCCTTCTGAAGTAATACCTGGGAAGCTAAGCTGTGCAATTTTATTGCCCAGAATCGGCC
 
. : . : . : . : . : . :
JMSF019P07+ TCTTCGAAGGGGTC
JMSF022I20+ TCTTCGAAGGGGTC
JMFF040I06+ TCTTCGAAGGGGTCTGAAAAACACTCAAAATAAAAATGTAATTTACGCACAATTACAAAA
                      ____________________________________________________________
consensus TCTTCGAAGGGGTCTGAAAAACACTCAAAATAAAAATGTAATTTACGCACAATTACAAAA
 
. : . : . : . : . : . :
JMSF009G24+ CAAGATTAGAAAG
JMFF040I06+ CGACATTGGAGATTAAACAAAGGGGGAGAAGGAATAGGAACCCCCACCAAGATTAGAAAG
                      ____________________________________________________________
consensus CGACATTGGAGATTAAACAAAGGGGGAGAAGGAATAGGAACCCCCACCAAGATTAGAAAG
 
. : . : . : . : . : . :
JMSF009G24+ CTGGAATCTGCAACACTGCAAGCCATAGGAGATTTGGGTCAAGAATCTGCCCTTTGAAGC
JMFF040I06+ CTGGAATCTGCAACACTGCAAGCCATAGGAGATTTGGGTCAAGAATCTGCCCTTTGAAGC
                      ____________________________________________________________
consensus CTGGAATCTGCAACACTGCAAGCCATAGGAGATTTGGGTCAAGAATCTGCCCTTTGAAGC
 
. : . : . : . : . : . :
JMSF009G24+ TACGGCGTTATTTCAATTACCCTTTAGGCTTTAGCTTCTTCTTAAGCTGGCGGGTAGTAC
JMFF040I06+ TACGGCGTTATTTCAATTACCCTTTAGGCTTTAGCTTCTTCTTAAGCTGGCGGGTAGTAC
                      ____________________________________________________________
consensus TACGGCGTTATTTCAATTACCCTTTAGGCTTTAGCTTCTTCTTAAGCTGGCGGGTAGTAC
 
. : . : . : . : . : . :
JMSF009G24+ GTGAAGAAGATCATAGTAAAAGGTAAAGCCCTGAAAGCAGTTT
JMFF040I06+ GTGAAGAAGATCATAGTAAAAGGTAAAGCCCTGAAAGCAGTTTTCGCAGAGTTTGTGGAG
                      ____________________________________________________________
consensus GTGAAGAAGATCATAGTAAAAGGTAAAGCCCTGAAAGCAGTTTTCGCAGAGTTTGTGGAG
 
. : . : . : . : . : . :
JMFF040I06+ TTGGGAGGCTTTGTTATAAGAGGGTGGAATTGGAGTGGCCCCAAAGAAGGATAGAATACT
                      ____________________________________________________________
consensus TTGGGAGGCTTTGTTATAAGAGGGTGGAATTGGAGTGGCCCCAAAGAAGGATAGAATACT