Contig 006047:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007K23Sequence616006047 (7)ref|XP_009605315.1|9e-112PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]523011086 (5)ref|XP_009783888.1|1e-26PREDICTED: protein transport protein SEC24 [Nicotiana sylvestris]
JMFF008P07Sequence618006047 (7)ref|XP_009605315.1|2e-112PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]251011086 (5)
JMFF010M19Sequence521006047 (7)ref|XP_009605315.1|2e-93PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]704011086 (5)ref|XP_008360906.1|239PREDICTED: uncharacterized protein LOC103424589 [Malus domestica]
JMFF028I23Sequence500006047 (7)ref|XP_009605315.1|1e-85PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]705011086 (5)gb|KDO58106.1|3e-64hypothetical protein CISIN_1g0053622mg, partial [Citrus sinensis]
JMFF039C21Sequence307006047 (7)ref|XP_009605315.1|5e-55PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]572011086 (5)gb|KDO58106.1|2e-41hypothetical protein CISIN_1g0053622mg, partial [Citrus sinensis]
JMFS169D09Sequence591006047 (7)ref|XP_009605315.1|1e-108PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]
JMSF032I02Sequence664006047 (7)ref|XP_009605315.1|6e-122PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF032I02+                                                           CTCAAGTGCAGA
                      ____________________________________________________________
consensus                                                             CTCAAGTGCAGA
 
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JMFF008P07+                                              GAAATGAAGATAAGGGCATGACATC
JMFF007K23+                                              GAAATGAAGATAAGGGCATGACATC
JMFS169D09+                                                          AGGGCATGACATC
JMSF032I02+           TGCAATGCGGTCTTTGAATGTATCCACAGGAGCTAGAAATGAAGATAAGGGCATGACATC
                      ____________________________________________________________
consensus             TGCAATGCGGTCTTTGAATGTATCCACAGGAGCTAGAAATGAAGATAAGGGCATGACATC
 
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JMFF008P07+           CGCAAGTTCCATTGGCAAGGTACCATCAGATTCCGGGGGAATAAACACATTCTTCACTAC
JMFF007K23+           CGCAAGTTCCATTGGCAAGGTACCATCAGATTCCGGGGGAATAAACACATTCTTCACTAC
JMFS169D09+           CGCAAGTTCCATTGGCAAGGTACCATCAGATTCCGGGGGAATAAACACATTCTTCACTAC
JMSF032I02+           CGCAAGTTCCATTGGCAAGGTACCATCAGATTCCGGGGGAATAAACACATTCTTCACTAC
                      ____________________________________________________________
consensus             CGCAAGTTCCATTGGCAAGGTACCATCAGATTCCGGGGGAATAAACACATTCTTCACTAC
 
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JMFF008P07+           TGGAATTGGTCCTTGAACATCATATAAACCAATTTTATGGCTGAAGGTAGCAAGGCCAAA
JMFF007K23+           TGGAATTGGTCCTTGAACATCATATAAACCAATTTTATGGCTGAAGGTAGCAAGGCCAAA
JMFS169D09+           TGGAATTGGTCCTTGAACATCATATAAACCAATTTTATGGCTGAAGGTAGCAAGGCCAAA
JMFF010M19+                     CCTTGAACATCATATAAACCAATTTTATGGCTGAAGGTAGCAAGGCCAAA
JMSF032I02+           TGGAATTGGTCCTTGAACATCATATAAACCAATTTTATGGCTGAAGGTAGCAAGGCCAAA
JMFF028I23+                                                   CTGAAGGTAGCAAGGCCAAA
                      ____________________________________________________________
consensus             TGGAATTGGTCCTTGAACATCATATAAACCAATTTTATGGCTGAAGGTAGCAAGGCCAAA
 
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JMFF008P07+           TAGTGACCCAGGCCCAAGACCTTCCAAAGCTGCCAGAAGAGCACTTTTGACAAGTTCCAA
JMFF007K23+           TAGTGACCCAGGCCCAAGACCTTCCAAAGCTGCCAGAAGAGCACTTTTGACAAGTTCCAA
JMFS169D09+           TAGTGACCCAGGCCCAAGACCTTCCAAAGCTGCCAGAAGAGCACTTTTGACAAGTTCCAA
JMFF010M19+           TAGTGACCCAGGCCCAAGACCTTCCAAAGCTGCCAGAAGAGCACTTTTGACAAGTTCCAA
JMSF032I02+           TAGTGACCCAGGCCCAAGACCTTCCAAAGCTGCCAGAAGAGCACTTTTGACAAGTTCCAA
JMFF028I23+           TAGTGACCCAGGCCCAAGACCTTCCAAAGCTGCCAGAAGAGCACTTTTGACAAGTTCCAA
                      ____________________________________________________________
consensus             TAGTGACCCAGGCCCAAGACCTTCCAAAGCTGCCAGAAGAGCACTTTTGACAAGTTCCAA
 
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JMFF008P07+           AAATTCCTCCGAGGAAGCAAGATCAACAGCCGCCACATACACCGGCCGCGCCTGCATTTC
JMFF007K23+           AAATTCCTCCGAGGAAGCAAGATCAACAGCCGCCACATACACCGGCCGCGCCTGCATTTC
JMFS169D09+           AAATTCCTCCGAGGAAGCAAGATCAACAGCCGCCACATACACCGGCCGCGCCTGCATTTC
JMFF010M19+           AAATTCCTCCGAGGAAGCAAGATCAACAGCCGCCACATACACCGGCCGCGCCTGCATTTC
JMSF032I02+           AAATTCCTCCGAGGAAGCAAGATCAACAGCCGCCACATACACCGGCCGCGCCTGCATTTC
JMFF028I23+           AAATTCCTCCGAGGAAGCAAGATCAACAGCCGCCACATACACCGGCCGCGCCTGCATTTC
                      ____________________________________________________________
consensus             AAATTCCTCCGAGGAAGCAAGATCAACAGCCGCCACATACACCGGCCGCGCCTGCATTTC
 
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JMFF008P07+           CTCAGATCCTTCCAAGGGCAATTCAAGGTCAATGAAGGAGGACATGTTCTCGGGGCAGGA
JMFF007K23+           CTCAGATCCTTCCAAGGGCAATTCAAGGTCAATGAAGGAGGACATGTTCTCGGGGCAGGA
JMFS169D09+           CTCAGATCCTTCCAAGGGCAATTCAAGGTCAATGAAGGAGGACATGTTCTCGGGGCAGGA
JMFF010M19+           CTCAGATCCTTCCAAGGGCAATTCAAGGTCAATGAAGGAGGACATGTTCTCGGGGCAGGA
JMSF032I02+           CTCAGATCCTTCCAAGGGCAATTCAAGGTCAATGAAGGAGGACATGTTCTCGGGGCAGGA
JMFF028I23+           CTCAGATCCTTCCAAGGGCAATTCAAGGTCAATGAAGGAGGACATGTTCTCGGGGCAGGA
JMFF039C21+                                                                GGCAGGA
                      ____________________________________________________________
consensus             CTCAGATCCTTCCAAGGGCAATTCAAGGTCAATGAAGGAGGACATGTTCTCGGGGCAGGA
 
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JMFF008P07+           ATCAGGGAGGGAGTAGCGAGCGATGGCCTGGGAAGGGAGGCCATTGAGGGTCCCACAGAG
JMFF007K23+           ATCAGGGAGGGAGTAGCGAGCGATGGCCTGGGAAGGGAGNCCATTGAGGGTCCCACAGAG
JMFS169D09+           ATCAGGGAGGGAGTAGCGAGCGATGGCCTGGGAAGGGAGGCCATTGAGGGTCCCACAGAG
JMFF010M19+           ATCAGGGAGGGAGTAGCGAGCGATGGCCTGGGAAGGGAGGCCATTGAGGGTCCCACAGAG
JMSF032I02+           ATCAGGGAGGGAGTAGCGAGCGATGGCCTGGGAAGGGAGGCCATTGAGGGTCCCACAGAG
JMFF028I23+           ATCAGGGAGGGAGTAGCGAGCGATGGCCTGGGAAGGGAGGCCATTGAGGGTCCCACAGAG
JMFF039C21+           ATCAGGGAGGGAGTAGCGAGCGATGGCCTGGGAAGGGAGGCCATTGAGGGTCCCACAGAG
                      ____________________________________________________________
consensus             ATCAGGGAGGGAGTAGCGAGCGATGGCCTGGGAAGGGAGGCCATTGAGGGTCCCACAGAG
 
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JMFF008P07+           AGCGCAGGTCCACGCCCACTGCTCCTGCTCGCAGTAGGTGTTGTAGTATGCCCAGCAGTT
JMFF007K23+           AGCGCAGGTCCACGCCCACTGCTCCTGCTCGCAGTAGGTGTTGTAGTATGCCCAGCAGTT
JMFS169D09+           AGCGCAGGTCCACGCCCACTGCTCCTGCTCGCAGTAGGTGTTGTAGTATGCCCAGCAGTT
JMFF010M19+           AGCGCAGGTCCACGCCCACTGCTCCTGCTCGCAGTAGGTGTTGTAGTATGCCCAGCAGTT
JMSF032I02+           AGCGCAGGTCCACGCCCACTGCTCCTGCTCGCAGTAGGTGTTGTAGTATGCCCAGCAGTT
JMFF028I23+           AGCGCAGGTCCACGCCCACTGCTCCTGCTCGCAGTAGGTGTTGTAGTATGCCCAGCAGTT
JMFF039C21+           AGCGCAGGTCCACGCCCACTGCTCCTGCTCGCAGTAGGTGTTGTAGTATGCCCAGCAGTT
                      ____________________________________________________________
consensus             AGCGCAGGTCCACGCCCACTGCTCCTGCTCGCAGTAGGTGTTGTAGTATGCCCAGCAGTT
 
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JMFF008P07+           CTCGCACCGCGGCAAGAGGTGGCCGTCCGATCCGTACACCGGCGGATTGCCGTTCTCGTC
JMFF007K23+           CTCGCACCGCGGCAAGAGGTGGCCGTCCGATCCGTACACCGGCGGATTGCCGTTCTCGTC
JMFS169D09+           CTCGCACCGCGGCAAGAGGTGGCCGTCCGATCCGTACACCGGCGGATTGCCGTTCTCGTC
JMFF010M19+           CTCGCACCGCGGCAAGAGGTGGCCGTCCGATCCGTACACCGGCGGATTGCCGTTCTCGTC
JMSF032I02+           CTCGCACCGCGGCAAGAGGTGGCCGTCCGATCCGTACACCGGCGGATTGCCGTTCTCGTC
JMFF028I23+           CTCGCACCGCGGCAAGAGGTGGCCGTCCGATCCGTACACCGGCGGATTGCCGTTCTCGTC
JMFF039C21+           CTCGCACCGCGGCAAGAGGTGGCCGTCCGATCCGTACACCGGCGGATTGCCGTTCTCGTC
                      ____________________________________________________________
consensus             CTCGCACCGCGGCAAGAGGTGGCCGTCCGATCCGTACACCGGCGGATTGCCGTTCTCGTC
 
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JMFF008P07+           CTTGGCGGCGAACGGCGTCAACGTCACCCCCCACGGCAACCCCGCCACCTCCAGGGCGTC
JMFF007K23+           CTTGGCGGCGAACGGCGTCAACGTCACCCCCCACGGCAACCCCGCCACCTCCAGGGCGTC
JMFS169D09+           CTTGGCGGCGAACGGCGTCAACGTCACCCCCCACGGCAACCCCGCCACCTCCAGGGCGTC
JMFF010M19+           CTTGGCGGCGAACGGCGTCAACGTCACCCCCCACGGCAACCCCGCCACCTCCAGGGCGTC
JMSF032I02+           CTTGGCGGCGAACGGCGTCAACGTCACCCCCCACGGCAACCCCGCCACCTCCAGGGCGTC
JMFF028I23+           CTTGGCGGCGAACGGCGTCAACGTCACCCCCCACGGCAACCCCGCCACCTCCAGGGCGTC
JMFF039C21+           CTTGGCGGCGAACGGCGTCAACGTCACCCCCCACGGCAACCCCGCCACCTCCAGGGCGTC
                      ____________________________________________________________
consensus             CTTGGCGGCGAACGGCGTCAACGTCACCCCCCACGGCAACCCCGCCACCTCCAGGGCGTC
 
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JMFF008P07+           GGGGTCGCCGGGGAATCGATTCACACTTGCACGCACCGCCATTGCGCA            
JMFF007K23+           GGGGTCGCCGGGGAATCGATTCACACTTGCACGCACCGCCATTGCGCAGTT         
JMFS169D09+           GGGGTCGCCGGGGAATCGATTCACACTTGCACGCACCG                      
JMFF010M19+           GGGGTCGCCGGGGAATCGATTCACACTTGCACGCACCGCCATTGCGCAGTT         
JMSF032I02+           GGGGTCGCCGGGGAATCGATTCACACTTGCACGCACCGCCATTGCGCAGTT         
JMFF028I23+           GGGGTCGCCGGGGAATCGATTCACACTTGCACGCACCGCCATTGCGCAGTTGATAGAAAT
JMFF039C21+           GGGGTCGCCGGGGAATCGATTCACACTTGCACGCACCGCCATTGCGCAGTTGATAGAAAT
                      ____________________________________________________________
consensus             GGGGTCGCCGGGGAATCGATTCACACTTGCACGCACCGCCATTGCGCAGTTGATAGAAAT