| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039A05 | Sequence | 515 | 006046 (8) | ref|XP_009795053.1| | 1e-54 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X2 [Nicotiana sylvestris | 629 | 006046 (8) | gb|AAQ72500.1| | 9e-38 | MADS-box protein 15 [Petunia x hybrida] |
| JMFF046D09 | Sequence | 597 | 006046 (8) | gb|AAQ72500.1| | 4e-64 | MADS-box protein 15 [Petunia x hybrida] | 492 | 006046 (8) | ref|XP_006360254.1| | 1e-09 | PREDICTED: protein MADS AFFECTING FLOWERING 5-like isoform X1 [Solanum tuberosu |
| JMFN032I10 | Sequence | 655 | 006046 (8) | ref|XP_009795052.1| | 7e-71 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X1 [Nicotiana sylvestris | |||||
| JMFS037H11 | Sequence | 567 | 006046 (8) | gb|AAQ72500.1| | 6e-61 | MADS-box protein 15 [Petunia x hybrida] | |||||
| JMSF035P06 | Sequence | 707 | 006046 (8) | ref|XP_009795052.1| | 5e-68 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X1 [Nicotiana sylvestris | 728 | 006046 (8) | ref|XP_009595701.1| | 4e-31 | PREDICTED: agamous-like MADS-box protein AGL27 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF035P06- CACATCAAATTATATTGCAGCCAA
____________________________________________________________
consensus CACATCAAATTATATTGCAGCCAA
. : . : . : . : . : . :
rJMFF046D09- CAGACAACATCAAATAAATT
rJMSF035P06- AGGACCCCTATATATTACAAGTTCTGGGCCAGGAGAACTACAGACAACATCAAATAAATT
____________________________________________________________
consensus AGGACCCCTATATATTACAAGTTCTGGGCCAGGAGAACTACAGACAACATCAAATAAATT
. : . : . : . : . : . :
rJMFF046D09- AAAACACTGACATATTGAATCAGAGTCTCACACAATCACACACACAAGTATTGACATTTT
rJMSF035P06- AAAACACTGACATATTGAATCAGAGTCTCACACAATCACACACACAAGTATTGACATTTT
rJMFF039A05- AGTATTGACATTTT
____________________________________________________________
consensus AAAACACTGACATATTGAATCAGAGTCTCACACAATCACACACACAAGTATTGACATTTT
. : . : . : . : . : . :
rJMFF046D09- TAGGTAGCTCGCAGTAAGGAGCTAGAGCAGAGGCAGAAAGTAATAACAAGCTAATTAAGG
rJMSF035P06- TAGGTAGCTCGCAGTAAGGAGCTAGAGCAGAGGCAGAAAGTAATAACAAGCTAATTAAGG
rJMFF039A05- TAGGTAGCTCGCAGTAAGGAGCTAGAGCAGAGGCAGAAAGTAATAACAAGCTAATTAAGG
____________________________________________________________
consensus TAGGTAGCTCGCAGTAAGGAGCTAGAGCAGAGGCAGAAAGTAATAACAAGCTAATTAAGG
. : . : . : . : . : . :
rJMFF046D09- TTCTTATTACTCTCGAATGGGATGATTAGGAATAATAGAAAACATGATTTAATTTTATTC
rJMSF035P06- TTCTTATTACTCTCGAATGGGATGATTAGGAATAATAGAAAACATGATTTAATTTTATTC
rJMFF039A05- TTCTTATTACTCTCGAATGGGATGATTAGGAATAATAGAAAACATGATTTAATTTTATTC
JMSF035P06+ TTC
____________________________________________________________
consensus TTCTTATTACTCTCGAATGGGATGATTAGGAATAATAGAAAACATGATTTAATTTTATTC
. : . : . : . : . : . :
rJMFF046D09- TATTTAGCTTCTCCAAGCGGCCGGGCAGCATACAGTGCAGGATTGATTCAAAGTAAATTG
rJMSF035P06- TATTTAGCTTCTCCAAGCGGCCGGGCAGCATACAGTGCAGGATTGATTCAAAGTAAATTG
rJMFF039A05- TATTTAGCTTCTCCAAGCGGCCGGGCAGCATACAGTGCAGGATTGATTCAAAGTAAATTG
JMSF035P06+ TATTTAGCTTCTCCAAGCGGCCGGGCAGCATACAGTGCAGGATTGATTCAAAGTAAATTG
JMFN032I10+ CAGGATTGATTCAAAGTAAATTG
____________________________________________________________
consensus TATTTAGCTTCTCCAAGCGGCCGGGCAGCATACAGTGCAGGATTGATTCAAAGTAAATTG
. : . : . : . : . : . :
rJMFF046D09- AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
rJMSF035P06- AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
rJMFF039A05- AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
JMSF035P06+ AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
JMFF046D09+ ACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
JMFN032I10+ AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
____________________________________________________________
consensus AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
. : . : . : . : . : . :
rJMFF046D09- -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
rJMSF035P06- -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
rJMFF039A05- -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
JMSF035P06+ CCCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
JMFF046D09+ -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTNGCTCCTCAAGACG
JMFN032I10+ -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
____________________________________________________________
consensus -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
. : . : . : . : . : . :
rJMFF046D09- CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
rJMSF035P06- CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
rJMFF039A05- CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
JMSF035P06+ CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
JMFF046D09+ CCTTTNTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
JMFN032I10+ CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
JMFS037H11+ TCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
____________________________________________________________
consensus CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
. : . : . : . : . : . :
rJMFF046D09- CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGC
rJMSF035P06- CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
rJMFF039A05- CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
JMSF035P06+ CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
JMFF046D09+ CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
JMFN032I10+ CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
JMFS037H11+ CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
JMFF039A05+ TCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
____________________________________________________________
consensus CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
. : . : . : . : . : . :
rJMSF035P06- GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
rJMFF039A05- GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
JMSF035P06+ GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
JMFF046D09+ GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
JMFN032I10+ GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
JMFS037H11+ GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
JMFF039A05+ GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
____________________________________________________________
consensus GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
. : . : . : . : . : . :
rJMSF035P06- CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
rJMFF039A05- CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
JMSF035P06+ CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
JMFF046D09+ CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
JMFN032I10+ CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
JMFS037H11+ CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
JMFF039A05+ CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
____________________________________________________________
consensus CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
. : . : . : . : . : . :
rJMSF035P06- GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGA
rJMFF039A05- GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
JMSF035P06+ GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
JMFF046D09+ GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
JMFN032I10+ GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
JMFS037H11+ GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
JMFF039A05+ GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
____________________________________________________________
consensus GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
. : . : . : . : . : . :
rJMFF039A05- GCCGCTGCTGGA
JMSF035P06+ GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
JMFF046D09+ GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
JMFN032I10+ GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
JMFS037H11+ GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
JMFF039A05+ GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
____________________________________________________________
consensus GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
. : . : . : . : . : . :
JMSF035P06+ GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
JMFF046D09+ GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
JMFN032I10+ GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
JMFS037H11+ GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
JMFF039A05+ GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
____________________________________________________________
consensus GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
. : . : . : . : . : . :
JMSF035P06+ TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
JMFF046D09+ TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
JMFN032I10+ TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
JMFS037H11+ TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
JMFF039A05+ TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
____________________________________________________________
consensus TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
. : . : . : . : . : . :
JMSF035P06+ CCGATGAGTCCGGGGAGCTAAAGTGCATC
JMFF046D09+ CCGATGAGTCCGGGGAGCTAAA
JMFN032I10+ CCGATGAGTCCGGGGAGCTAAAGTGCATC
JMFS037H11+ CCGATGAGTCCGGGGAGCTAAAGTGCATCATTATCGCCATTAAAACGGGATTCATAAAGT
JMFF039A05+ CCGATGAGTCCGGGGAGCTAAAGTGCATCATTATCGCCATTAAAACGGGATTCATAAAGT
____________________________________________________________
consensus CCGATGAGTCCGGGGAGCTAAAGTGCATCATTATCGCCATTAAAACGGGATTCATAAAGT
. : . : . : . : . : . :
JMFS037H11+ CATCACAAACCACTGACTCTTCGCACTCCACCCCCTATCCCCAGGGGTAATT
JMFF039A05+ CATCACAAACCACTGACTCTTCGCACTCCACCCCCTATCCCCAGGGGTAATTTGCCGTCC
____________________________________________________________
consensus CATCACAAACCACTGACTCTTCGCACTCCACCCCCTATCCCCAGGGGTAATTTGCCGTCC