Contig 006046:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039A05Sequence515006046 (8)ref|XP_009795053.1|1e-54PREDICTED: agamous-like MADS-box protein AGL27 isoform X2 [Nicotiana sylvestris629006046 (8)gb|AAQ72500.1|9e-38MADS-box protein 15 [Petunia x hybrida]
JMFF046D09Sequence597006046 (8)gb|AAQ72500.1|4e-64MADS-box protein 15 [Petunia x hybrida]492006046 (8)ref|XP_006360254.1|1e-09PREDICTED: protein MADS AFFECTING FLOWERING 5-like isoform X1 [Solanum tuberosu
JMFN032I10Sequence655006046 (8)ref|XP_009795052.1|7e-71PREDICTED: agamous-like MADS-box protein AGL27 isoform X1 [Nicotiana sylvestris
JMFS037H11Sequence567006046 (8)gb|AAQ72500.1|6e-61MADS-box protein 15 [Petunia x hybrida]
JMSF035P06Sequence707006046 (8)ref|XP_009795052.1|5e-68PREDICTED: agamous-like MADS-box protein AGL27 isoform X1 [Nicotiana sylvestris728006046 (8)ref|XP_009595701.1|4e-31PREDICTED: agamous-like MADS-box protein AGL27 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF035P06- CACATCAAATTATATTGCAGCCAA
                      ____________________________________________________________
consensus CACATCAAATTATATTGCAGCCAA
 
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rJMFF046D09- CAGACAACATCAAATAAATT
rJMSF035P06- AGGACCCCTATATATTACAAGTTCTGGGCCAGGAGAACTACAGACAACATCAAATAAATT
                      ____________________________________________________________
consensus AGGACCCCTATATATTACAAGTTCTGGGCCAGGAGAACTACAGACAACATCAAATAAATT
 
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rJMFF046D09- AAAACACTGACATATTGAATCAGAGTCTCACACAATCACACACACAAGTATTGACATTTT
rJMSF035P06- AAAACACTGACATATTGAATCAGAGTCTCACACAATCACACACACAAGTATTGACATTTT
rJMFF039A05- AGTATTGACATTTT
                      ____________________________________________________________
consensus AAAACACTGACATATTGAATCAGAGTCTCACACAATCACACACACAAGTATTGACATTTT
 
. : . : . : . : . : . :
rJMFF046D09- TAGGTAGCTCGCAGTAAGGAGCTAGAGCAGAGGCAGAAAGTAATAACAAGCTAATTAAGG
rJMSF035P06- TAGGTAGCTCGCAGTAAGGAGCTAGAGCAGAGGCAGAAAGTAATAACAAGCTAATTAAGG
rJMFF039A05- TAGGTAGCTCGCAGTAAGGAGCTAGAGCAGAGGCAGAAAGTAATAACAAGCTAATTAAGG
                      ____________________________________________________________
consensus TAGGTAGCTCGCAGTAAGGAGCTAGAGCAGAGGCAGAAAGTAATAACAAGCTAATTAAGG
 
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rJMFF046D09- TTCTTATTACTCTCGAATGGGATGATTAGGAATAATAGAAAACATGATTTAATTTTATTC
rJMSF035P06- TTCTTATTACTCTCGAATGGGATGATTAGGAATAATAGAAAACATGATTTAATTTTATTC
rJMFF039A05- TTCTTATTACTCTCGAATGGGATGATTAGGAATAATAGAAAACATGATTTAATTTTATTC
JMSF035P06+ TTC
                      ____________________________________________________________
consensus TTCTTATTACTCTCGAATGGGATGATTAGGAATAATAGAAAACATGATTTAATTTTATTC
 
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rJMFF046D09- TATTTAGCTTCTCCAAGCGGCCGGGCAGCATACAGTGCAGGATTGATTCAAAGTAAATTG
rJMSF035P06- TATTTAGCTTCTCCAAGCGGCCGGGCAGCATACAGTGCAGGATTGATTCAAAGTAAATTG
rJMFF039A05- TATTTAGCTTCTCCAAGCGGCCGGGCAGCATACAGTGCAGGATTGATTCAAAGTAAATTG
JMSF035P06+ TATTTAGCTTCTCCAAGCGGCCGGGCAGCATACAGTGCAGGATTGATTCAAAGTAAATTG
JMFN032I10+ CAGGATTGATTCAAAGTAAATTG
                      ____________________________________________________________
consensus TATTTAGCTTCTCCAAGCGGCCGGGCAGCATACAGTGCAGGATTGATTCAAAGTAAATTG
 
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rJMFF046D09- AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
rJMSF035P06- AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
rJMFF039A05- AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
JMSF035P06+ AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
JMFF046D09+ ACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
JMFN032I10+ AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
                      ____________________________________________________________
consensus AGGGTTGCTGCTGCTTGCTGCTGTGTACCAACAACCGTCGCCAGGCTGGTGAAATCCACA
 
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rJMFF046D09- -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
rJMSF035P06- -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
rJMFF039A05- -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
JMSF035P06+ CCCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
JMFF046D09+ -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTNGCTCCTCAAGACG
JMFN032I10+ -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
                      ____________________________________________________________
consensus -CCCATCTCATTCACTTCCTCCCTATCCTTCTTAATTCCACTTATTTGCTCCTCAAGACG
 
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rJMFF046D09- CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
rJMSF035P06- CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
rJMFF039A05- CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
JMSF035P06+ CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
JMFF046D09+ CCTTTNTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
JMFN032I10+ CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
JMFS037H11+ TCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
                      ____________________________________________________________
consensus CCTTTTTTCGTCTTCCAACATCTTCTCCTTTTCATGTAGATGCGCGATAGATTCCATCAG
 
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rJMFF046D09- CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGC
rJMSF035P06- CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
rJMFF039A05- CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
JMSF035P06+ CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
JMFF046D09+ CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
JMFN032I10+ CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
JMFS037H11+ CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
JMFF039A05+ TCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
                      ____________________________________________________________
consensus CAAACAATTCTTCCTAGATCTTGTTTCTAGAAGTGCACTCCCAATCTGCTGCTCCAAATG
 
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rJMSF035P06- GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
rJMFF039A05- GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
JMSF035P06+ GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
JMFF046D09+ GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
JMFN032I10+ GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
JMFS037H11+ GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
JMFF039A05+ GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
                      ____________________________________________________________
consensus GACAAGATCAGTCACACTAAGCTGGTCAGGTTCCTCAATGTCACTTTCCAGTGTCTGTAC
 
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rJMSF035P06- CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
rJMFF039A05- CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
JMSF035P06+ CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
JMFF046D09+ CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
JMFN032I10+ CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
JMFS037H11+ CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
JMFF039A05+ CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
                      ____________________________________________________________
consensus CAGTTCTCCAATTGTCATGTAACGCGAGTAATTAGATTGCTTTTCCTCTGTTTCTACATG
 
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rJMSF035P06- GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGA
rJMFF039A05- GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
JMSF035P06+ GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
JMFF046D09+ GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
JMFN032I10+ GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
JMFS037H11+ GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
JMFF039A05+ GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
                      ____________________________________________________________
consensus GCTGTTGTATCTTTGTAGGACCCCTGTCAAACTGTTAGTGCTGGAGAAGTCGTAGAGCTT
 
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rJMFF039A05- GCCGCTGCTGGA
JMSF035P06+ GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
JMFF046D09+ GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
JMFN032I10+ GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
JMFS037H11+ GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
JMFF039A05+ GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
                      ____________________________________________________________
consensus GCCGCTGCTGGAGAAGATGACGACGGCGACGTCGACGTCGCACAGAACGGAGAGTTCCTT
 
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JMSF035P06+ GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
JMFF046D09+ GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
JMFN032I10+ GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
JMFS037H11+ GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
JMFF039A05+ GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
                      ____________________________________________________________
consensus GGCCTTCTTTATCAGTCCGTTCCGGCGCTTGGAGAAGGTGACTTGCCGGCTACTCTTGTC
 
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JMSF035P06+ TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
JMFF046D09+ TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
JMFN032I10+ TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
JMFS037H11+ TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
JMFF039A05+ TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
                      ____________________________________________________________
consensus TTCGATTCGCTTTATCTCTACCTTCCTCCGCCCCATTGGATCGAGAAAAGCCCTAGAATT
 
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JMSF035P06+ CCGATGAGTCCGGGGAGCTAAAGTGCATC
JMFF046D09+ CCGATGAGTCCGGGGAGCTAAA
JMFN032I10+ CCGATGAGTCCGGGGAGCTAAAGTGCATC
JMFS037H11+ CCGATGAGTCCGGGGAGCTAAAGTGCATCATTATCGCCATTAAAACGGGATTCATAAAGT
JMFF039A05+ CCGATGAGTCCGGGGAGCTAAAGTGCATCATTATCGCCATTAAAACGGGATTCATAAAGT
                      ____________________________________________________________
consensus CCGATGAGTCCGGGGAGCTAAAGTGCATCATTATCGCCATTAAAACGGGATTCATAAAGT
 
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JMFS037H11+ CATCACAAACCACTGACTCTTCGCACTCCACCCCCTATCCCCAGGGGTAATT
JMFF039A05+ CATCACAAACCACTGACTCTTCGCACTCCACCCCCTATCCCCAGGGGTAATTTGCCGTCC
                      ____________________________________________________________
consensus CATCACAAACCACTGACTCTTCGCACTCCACCCCCTATCCCCAGGGGTAATTTGCCGTCC