Contig 006045:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038N14Sequence572006045 (3)ref|XP_009776543.1|65.5PREDICTED: uncharacterized protein LOC104226288 [Nicotiana sylvestris]636006045 (3)ref|XP_009776543.1|58.5PREDICTED: uncharacterized protein LOC104226288 [Nicotiana sylvestris]
JMFN033E11Sequence613006045 (3)ref|XP_009776543.1|65.5PREDICTED: uncharacterized protein LOC104226288 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN033E11+                                  CATTATTATTTGAACTTTGGTACAAAAAAAAAAGAGA
rJMFF038N14-                                                        AAAAAAAAAAGAGA
                      ____________________________________________________________
consensus                                    CATTATTATTTGAACTTTGGTACAAAAAAAAAAGAGA
 
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JMFN033E11+           ATATGATACTTTCAGTACTTTTCCATGCTTGAATTTATCAATTGACAAGCAAACATCGAG
rJMFF038N14-          ATATGATACTTTCACTAC-TTTCCATGCTTGAATTTATCAATTGACAAGCAAACATCGAG
JMFF038N14+                                       TTGAATTTATCAATNGACAAGCAAACATNGAG
                      ____________________________________________________________
consensus             ATATGATACTTTCAGTACTTTTCCATGCTTGAATTTATCAATTGACAAGCAAACATCGAG
 
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JMFN033E11+           GATGTGATTGAAATGGCGATGGGATTCATAGAAAGGAGTATTTTCTTCTTTCAAAACTTC
rJMFF038N14-          GATGTGATTGAAATGGCGATGGGATTCATANAAAGGAGTATTTTCTTCTTTCAAAACTTC
JMFF038N14+           GATGTGATTGAAATGGCGATGGGATTCATAGAAAGGAGTATTTTCTTCTTTCAAAACTTC
                      ____________________________________________________________
consensus             GATGTGATTGAAATGGCGATGGGATTCATAGAAAGGAGTATTTTCTTCTTTCAAAACTTC
 
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JMFN033E11+           AAGTGCAATTTCACAGTCTTCAAGACCTGTTACCGCGGCCGAGAGTTTGAAATTTATTTC
rJMFF038N14-          AAGTGCAATTTCACAGTCTTCAANACCTGTTACCGCGGCCGANAGTTTGAAATTTATTTC
JMFF038N14+           AAGTGCAATTTCACAGTCTTCAAGACCTGTTACCGCGGCCGAGAGTTTGAAATTTATTTC
                      ____________________________________________________________
consensus             AAGTGCAATTTCACAGTCTTCAAGACCTGTTACCGCGGCCGAGAGTTTGAAATTTATTTC
 
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JMFN033E11+           ATCATTAGCGTCCCCTTTCTTGACCAAATCCATGCACTCCTTCAATCTGGCATGGATGTT
rJMFF038N14-          ATCATTANCGTCCCCTTTCTTGACCAAATCCATGCACTCCTTCAATCTGGCATGGATGTT
JMFF038N14+           ATCATTAGCGTCCCCTTTCTTGACCAAATCCATGCACTCCTTCAATCTGGCATGGATGTT
                      ____________________________________________________________
consensus             ATCATTAGCGTCCCCTTTCTTGACCAAATCCATGCACTCCTTCAATCTGGCATGGATGTT
 
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JMFN033E11+           ATCGTAGGTCTCACCGCACTTGGATTTTCCCAAAGACACCTTTTTACTTTTAAGGATGAT
rJMFF038N14-          ATCGTAGGTCTCACCGCACTTGGATTTTCCCAAANACACCTTTTTACTTTTAAGGATGAT
JMFF038N14+           ATCGTAGGTCTCACCGCACTTGGATTTTCCCAAAGACACCTTTTTACTTTTAAGGATGAT
                      ____________________________________________________________
consensus             ATCGTAGGTCTCACCGCACTTGGATTTTCCCAAAGACACCTTTTTACTTTTAAGGATGAT
 
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JMFN033E11+           TGAATCCGAGTGTTTCATCGCCTCCATTAACCCCATAGTCATTGCCTGGTCCCAATTTGT
rJMFF038N14-          TGAATCCNAGNGTTTCATCGCCTCCATTAACCCCATAGTCATTGCCTGGTCCCAATTTGN
JMFF038N14+           TGAATCCGAGTGTTTCATCGCCTCCATTAACCCCATAGTCATTGCCTGGTCCCAATTTGT
                      ____________________________________________________________
consensus             TGAATCCGAGTGTTTCATCGCCTCCATTAACCCCATAGTCATTGCCTGGTCCCAATTTGT
 
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JMFN033E11+           GGCGGTCTTCGTCACATTCTCGCACATCGCTTTGTCAGCGGCCGTGGCGCAGTAGCTGTT
rJMFF038N14-          GGCGGTCTTCGTCACATTCTCGCACATCGCTTTGTCAGCGGCCGTGGCGCAGTAGCTGTT
JMFF038N14+           GGCGGTCTTCGTCACATTCTCGCACATCGCTTTGTCAGCGGCCGTGGCGCAGTAGCTGTT
                      ____________________________________________________________
consensus             GGCGGTCTTCGTCACATTCTCGCACATCGCTTTGTCAGCGGCCGTGGCGCAGTAGCTGTT
 
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JMFN033E11+           GCCGCCGGCACCGGCAGCAGCCTCGGCGGCATTCACAAGTGCCGACGAGCTGAGATACAT
rJMFF038N14-          GCCGCCGGCACCGGCAGCAGCCTCGGCGGCATTCACAAGTGCCGACGAGCTGANATACAT
JMFF038N14+           GCCGCCGGCACCGGCAGCAGCCTCGGCGGCATTCACAAGTGCCGACGAGCTGAGATACAT
                      ____________________________________________________________
consensus             GCCGCCGGCACCGGCAGCAGCCTCGGCGGCATTCACAAGTGCCGACGAGCTGAGATACAT
 
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JMFN033E11+           TACCGACAATGCCACAATGCATCCCTTCAAACTCACCATTTTCAAATTCTCCGATCTGTA
rJMFF038N14-          TACCGACAATGCCACAATGCATCCCTTCAAACTCACCATTTTCAAATTCTCCGATCTGTA
JMFF038N14+           TACCGACAATGCCACAATGCATCCCTTCAAACTCACCATTTTCAAATTCTCCGATCTGTA
                      ____________________________________________________________
consensus             TACCGACAATGCCACAATGCATCCCTTCAAACTCACCATTTTCAAATTCTCCGATCTGTA
 
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JMFN033E11+           TGTTCCTCAAAAAGTAAGATTTAAT                                   
rJMFF038N14-          TGTTCCTCAAAAAGTAANATTTAATTGATTTATTTATGTANATGNGTTTTACATTGATGA
JMFF038N14+           TGTTCCTCAAAAAGTAAGATTTAATTGATTTATTTATGTAGATGTGTTTTACATTGATGA
                      ____________________________________________________________
consensus             TGTTCCTCAAAAAGTAAGATTTAATTGATTTATTTATGTAGATGTGTTTTACATTGATGA