| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF037H07 | Sequence | 500 | 006038 (4) | ref|XP_010262413.1| | 2e-55 | PREDICTED: DAG protein, chloroplastic [Nelumbo nucifera] | 706 | 006038 (4) | ref|XP_006364567.1| | 9e-96 | PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Solanum tuber |
| JMFF043C05 | Sequence | 626 | 006038 (4) | ref|XP_009775265.1| | 5e-93 | PREDICTED: DAG protein, chloroplastic-like [Nicotiana sylvestris] | 598 | 006038 (4) | ref|XP_004240482.1| | 3e-70 | PREDICTED: DAG protein, chloroplastic-like [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMFF043C05- ACCCTGGAGGAGTTTTTTTTTTTTTTTTGTAA
rJMFF037H07- AA
____________________________________________________________
consensus ACCCTGGAGGAGTTTTTTTTTTTTTTTTGTAA
. : . : . : . : . : . :
rJMFF043C05- CAGTTGTAACTTCACATTCTTAAAGATAAGCTCAGCCATACAACTATAAAGACATCAATA
rJMFF037H07- CAGTTGTAACTTCACATTCTTAAAGATAAGCTCAGCCATACAACTATAAAGACATCAATA
____________________________________________________________
consensus CAGTTGTAACTTCACATTCTTAAAGATAAGCTCAGCCATACAACTATAAAGACATCAATA
. : . : . : . : . : . :
rJMFF043C05- CCACAGGCAGGCTGACATATGTCAAAGAATTCTCTTCTTTATCAGTAACAGACATTTCCC
rJMFF037H07- CCACAGGCAGGCTGACATATGTCAAAGAATTCTCTTCTTTATCAGTAACAGACATTTCCC
____________________________________________________________
consensus CCACAGGCAGGCTGACATATGTCAAAGAATTCTCTTCTTTATCAGTAACAGACATTTCCC
. : . : . : . : . : . :
rJMFF043C05- CCCACTTAAATTATATCAAAGAATTCTCTTCTTTCATGCATTCTCTAACTTTCACCTTGT
rJMFF037H07- CCCACTTAAATTATATCAAAGAATTCTCTTCTTTCATGCATTCTCTAACTTTCACCTTGT
____________________________________________________________
consensus CCCACTTAAATTATATCAAAGAATTCTCTTCTTTCATGCATTCTCTAACTTTCACCTTGT
. : . : . : . : . : . :
rJMFF043C05- ATTCTCGCGGCGCCTTACATAACGTGTCCGGTCATTATACCTAGGTCTATCTTGTGCTCT
rJMFF037H07- ATTCTCGCGGCGCCTTACATAACGTGTCCGGTCATTATACCTAGGTCTATCTTGTGCTCT
____________________________________________________________
consensus ATTCTCGCGGCGCCTTACATAACGTGTCCGGTCATTATACCTAGGTCTATCTTGTGCTCT
. : . : . : . : . : . :
rJMFF043C05- CTGTGGTACTGGCTCCACCCTCTTCTGTTTTTCAGGTGACCTTTGCACGATTTCTCCGTT
rJMFF037H07- CTGTGGTACTGGCTCCACCCTCTTCTGTTTTTCAGGTGACCTTTGCACGATTTCTCCGTT
JMFF043C05+ AGGTGACCTTTGCACGATTTCTCCGTT
____________________________________________________________
consensus CTGTGGTACTGGCTCCACCCTCTTCTGTTTTTCAGGTGACCTTTGCACGATTTCTCCGTT
. : . : . : . : . : . :
rJMFF043C05- AACAAACAGCTCAGCTCCATAGTCCTTGTTCTCAGGGTCAACATAAGAATCTGGAAGAAC
rJMFF037H07- AACAAACAGCTCAGCTCCATAGTCCTTGTTCTCAGGGTCAACATAAGAATCTGGAAGAAC
JMFF043C05+ AACAAACAGCTCAGCTCCATAGTCCTTGTTCTCAGGGTCAACATAAGAATCTGGAAGAAC
____________________________________________________________
consensus AACAAACAGCTCAGCTCCATAGTCCTTGTTCTCAGGGTCAACATAAGAATCTGGAAGAAC
. : . : . : . : . : . :
rJMFF043C05- AAAGAGAACTCCAGGCAACCCTTCGAGTTTAGTGGATGTCTCTTCATCAATTTCACATCC
rJMFF037H07- AAAGAGAACTCCAGGCAACCATTCGAGTTTAGTGGATGTCTCTTCATCAATTTCACATCC
JMFF043C05+ AAAGAGAACTCCAGGCAACCCTTCGAGTTTAGTGGATGTCTCTTCATCAATTTCACATCC
JMFF037H07+ TCTTCATCAATTTCACATCC
____________________________________________________________
consensus AAAGAGAACTCCAGGCAACCCTTCGAGTTTAGTGGATGTCTCTTCATCAATTTCACATCC
. : . : . : . : . : . :
rJMFF043C05- AAAT-CCAAAGTACCTCTCACAGGAGACATTGTATATCTTCTTCTTAGCCTCTTCTTCAC
rJMFF037H07- AAAT-CCAAAGTACCTCTCACAGGAGACATTGTATATCTTCTTCTTAGCCTCTTCTTCAC
JMFF043C05+ AAAT-CCAAAGTACCTCTCACAGGAGACATTGTATATCTTCTTCTTAGCCTCTTCTTCAC
JMFF037H07+ AAATCCCAAAGTACCTCTCACAGGAGACATTGTATATCTTCTTCTTAGCCTCTTCTTCAC
____________________________________________________________
consensus AAAT-CCAAAGTACCTCTCACAGGAGACATTGTATATCTTCTTCTTAGCCTCTTCTTCAC
. : . : . : . : . : . :
rJMFF043C05- TTCCAACAACTTTAGCTAGTGTTTGAATGTAACAATCAATCATTTTCTGTTTGGTAGCGT
rJMFF037H07- TTCCAACAACTTTAGCTAGTGTTTGAATGTAACAATCAATCATTTTCTGTTTGGTAGCGT
JMFF043C05+ TTCCAACAACTTTAGCTAGTGTTTGAATGTAACAATCAATCATTTTCTGTTTGGTAGCGT
JMFF037H07+ TTCCAACAACTTTAGCTAGTGTTTGAATGTAACAATCAATCATTTTCTGTTTGGTAGCGT
____________________________________________________________
consensus TTCCAACAACTTTAGCTAGTGTTTGAATGTAACAATCAATCATTTTCTGTTTGGTAGCGT
. : . : . : . : . : . :
rJMFF043C05- TTTCTCCTCCAGGCTTATCCATCACTA
rJMFF037H07- TTTCTCCTCCAGGCTTATCCATCACTATAAGCCAGTGCTCGTAGTCGCAGCCGGGAAAAA
JMFF043C05+ TTTCTCCTCCAGGCTTATCCATCACTATAAGCCAGTGCTCGTAGTCGCAGCCGGGAAAAA
JMFF037H07+ TTTCTCCTCCAGGCTTATCCATCACTATAAGCCAGTGCTCGTAGTCGCAGCCGGGAAAAA
____________________________________________________________
consensus TTTCTCCTCCAGGCTTATCCATCACTATAAGCCAGTGCTCGTAGTCGCAGCCGGGAAAAA
. : . : . : . : . : . :
rJMFF037H07- GAGGACCTATATCGGCGGGAGGGCGGTCCCCGGAGTTAGGCCTGGAATTGAGGGGCGAGT
JMFF043C05+ GAGGACCTATATCGGCGGGAGGGCGGTCCCCGGAGTTAGGCCTGGAATTGAGGGGCGAGT
JMFF037H07+ GAGGACCTATATCGGCGGGAGGGCGGTCCCCGGAGTTAGGCCTGGAATTGAGGGGCGAGT
____________________________________________________________
consensus GAGGACCTATATCGGCGGGAGGGCGGTCCCCGGAGTTAGGCCTGGAATTGAGGGGCGAGT
. : . : . : . : . : . :
rJMFF037H07- ANGCGGAACGGCTAGCCCTGCAGCTAATCGGACCCA
JMFF043C05+ AGGCGGAACGGCTAGCCCTGCAGCTAATCGGACCCAACCGAGCACCGCCGGGAGCGACGG
JMFF037H07+ AGGCGGAACGGCTAGCCCTGCAGCTAATCGGACCCAACCGAGCACCGCCGGGAGCGACGG
____________________________________________________________
consensus AGGCGGAACGGCTAGCCCTGCAGCTAATCGGACCCAACCGAGCACCGCCGGGAGCGACGG
. : . : . : . : . : . :
JMFF043C05+ CCCGGAGAGACTGAGCATGAATGGAACCAGAGACATTACTTGTGAGTATAGGTAGACCAG
JMFF037H07+ CCCGGAGAGACTGAGCATGAATGGAACCAGAGACATTACTTGTGAGTATAGGTAGACCAG
____________________________________________________________
consensus CCCGGAGAGACTGAGCATGAATGGAACCAGAGACATTACTTGTGAGTATAGGTAGACCAG
. : . : . : . : . : . :
JMFF043C05+ TTGAGAAAATCCGTTTATGAAAAATTCCTGTAGAAGTGGTCGACCGACTAGTAATTAGTG
JMFF037H07+ TTGAGAAAATCCGTTTATGAAAAATTCCTGTAGAAGTGGTCGACCGACTAGTAATTAGTG
____________________________________________________________
consensus TTGAGAAAATCCGTTTATGAAAAATTCCTGTAGAAGTGGTCGACCGACTAGTAATTAGTG
. : . : . : . : . : . :
JMFF043C05+ AACCGGTGACAGTTACAGCTCCCGTGCCGGCCATGGTTGTAGGTTCGCCGGAGAGTAAGT
JMFF037H07+ AACCGGTGACAGTTACAGCTCCCGTGCCGGCCATGGTTGTAGGTTCGCCGGAGAGTAAGT
____________________________________________________________
consensus AACCGGTGACAGTTACAGCTCCCGTGCCGGCCATGGTTGTAGGTTCGCCGGAGAGTAAGT